3CD6 | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	47
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2008-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3cd6W02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	3cd6W01

5DM7W 4WFAW 3G4SW 5GADa 1YI2W 1QVGV 3CCMW 3CMAW 3I55W 1M1KX 1BXYA 1N8RX 5JVHW 3OW2V 2OTJW 1VQ8W 1KC8X 1Q82X 1VQMW 1Q81X 5GAGa 2ZJPW 3I56W 1Q86X 1KD1X 1VQPW 3CCEW 1K8AX 3CCSW 1NJIX 3PIOW 1K73X 3CPWV 1YITW 3CD6W 1VQ9W 3G6EW 2OTLW 1S72W 1KQSV 2QEXW 3CMEW 1JJ2V 1VQ6W 3J7ZZ 3CCRW 5JVGW 3CCQW 1YJWW 1VQKW 3DLLW 1YJ9W 1YHQW 5HL7W 1K9MX 1VQ5W 4WFNW 4IO9W 3PIPW 2ZJRW 1VQNW 3G71W 1VQOW 3CCLW 3CCUW 1VQ7W 3CC4W 4WFBW 4IOAW 1YIJW 2QA4W 3CF5W 1W2BV 4UY8Z 1VQLW 4WF9W 2ZJQW 3CCJW 3CXCV 1Q7YX 4IOCW 1YJNW 4U67W 1QVFV 1VQ4W 3CC2W 3CC7W 3CCVW 5GAHa 5DM6W 5GAEa 4WCEW 1M90X
chains in the Genus database with same CATH superfamily

5DM7W 4WFAW 3G4SW 5GADa 1YI2W 1MWTA 1QVGV 3CCMW 3CMAW 3I55W 1M1KX 3O2HA 1BXYA 1N8RX 3ZG5A 1MBXC 3W7TA 5JVHW 3OW2V 2OTJW 1VQ8W 4DKIA 1KC8X 1Q82X 1VQMW 1Q81X 5GAGa 2ZJPW 3I56W 1Q86X 3G3PA 5M18A 1MWRA 2WA8A 1KD1X 1VQPW 3CCEW 1K8AX 1VQQA 3CCSW 1NJIX 1RQVA 3PIOW 1K73X 1DD3A 4CJNA 2W9RA 3CPWV 3G1BA 1YITW 3CD6W 1VQ9W 3G6EW 4YJXA 5CA3A 3O2BA 2OTLW 1S72W 4C1NA 1KQSV 2QEXW 3D3IA 3G19A 3CMEW 3ZG0A 1MWSA 1JJ2V 1VQ6W 3J7ZZ 3CCRW 5JVGW 3CCQW 3W7XA 1YJWW 1VQKW 3DLLW 1YJ9W 3ZFZA 1YHQW 1LZWA 5HL7W 4YJMA 1CTFA 4BL2A 1K9MX 1VQ5W 4WFNW 4IO9W 3PIPW 2ZJRW 1RQSA 1R6OC 1VQNW 3G71W 1VQOW 3CCLW 3CCUW 1VQ7W 3CC4W 4WFBW 3O1FA 4IOAW 3GQ0A 1MBVB 1YIJW 2QA4W 1MWUA 3CF5W 1W2BV 4UY8Z 1VQLW 3DNJA 4WF9W 1RQUA 2ZJQW 3CCJW 3CXCV 1Q7YX 4YKAA 4IOCW 3W7UA 3O1FB 4CPKA 1YJNW 4U67W 1QVFV 1VQ4W 1MG9A 1MBUC 5GW7A 3CC2W 3GW1A 3CC7W 3CCVW 5M1AA 5M19A 3GQ1A 5GAHa 3W7WA 3O2OA 5DM6W 4BL3A 5GAEa 1DD4A 2WA9A 4WCEW 3W7SA 1M90X 1R6QC
chains in the Genus database with same CATH topology

5DM7W 4WFAW 3G4SW 5GADa 1YI2W 1QVGV 3CCMW 3CMAW 3I55W 1M1KX 1BXYA 1N8RX 5JVHW 3OW2V 2OTJW 1VQ8W 1KC8X 1Q82X 1VQMW 1Q81X 5GAGa 2ZJPW 3I56W 1Q86X 1KD1X 1VQPW 3CCEW 1K8AX 3CCSW 1NJIX 3PIOW 1K73X 3CPWV 1YITW 3CD6W 1VQ9W 3G6EW 2OTLW 1S72W 4C1NA 1KQSV 2QEXW 3CMEW 1JJ2V 1VQ6W 3J7ZZ 3CCRW 5JVGW 3CCQW 1YJWW 1VQKW 3DLLW 1YJ9W 1YHQW 5HL7W 1K9MX 1VQ5W 4WFNW 4IO9W 3PIPW 2ZJRW 1VQNW 3G71W 1VQOW 3CCLW 3CCUW 1VQ7W 3CC4W 4WFBW 4IOAW 1YIJW 2QA4W 3CF5W 1W2BV 4UY8Z 1VQLW 4WF9W 2ZJQW 3CCJW 3CXCV 1Q7YX 4IOCW 1YJNW 4U67W 1QVFV 1VQ4W 3CC2W 3CC7W 3CCVW 5GAHa 5DM6W 5GAEa 4WCEW 1M90X
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5DM7 W;  4WFA W;  3G4S W;  5GAD a;  1YI2 W;  1QVG V;  3CCM W;  3CMA W;  3I55 W;  1M1K X;  1BXY A;  1N8R X;  5JVH W;  3OW2 V;  2OTJ W;  1VQ8 W;  1KC8 X;  1Q82 X;  1VQM W;  1Q81 X;  5GAG a;  2ZJP W;  3I56 W;  1Q86 X;  1KD1 X;  1VQP W;  3CCE W;  1K8A X;  3CCS W;  1NJI X;  3PIO W;  1K73 X;  3CPW V;  1YIT W;  3CD6 W;  1VQ9 W;  3G6E W;  2OTL W;  1S72 W;  1KQS V;  2QEX W;  3CME W;  1JJ2 V;  1VQ6 W;  3J7Z Z;  3CCR W;  5JVG W;  3CCQ W;  1YJW W;  1VQK W;  3DLL W;  1YJ9 W;  1YHQ W;  5HL7 W;  1K9M X;  1VQ5 W;  4WFN W;  4IO9 W;  3PIP W;  2ZJR W;  1VQN W;  3G71 W;  1VQO W;  3CCL W;  3CCU W;  1VQ7 W;  3CC4 W;  4WFB W;  4IOA W;  1YIJ W;  2QA4 W;  3CF5 W;  1W2B V;  4UY8 Z;  1VQL W;  4WF9 W;  2ZJQ W;  3CCJ W;  3CXC V;  1Q7Y X;  4IOC W;  1YJN W;  4U67 W;  1QVF V;  1VQ4 W;  3CC2 W;  3CC7 W;  3CCV W;  5GAH a;  5DM6 W;  5GAE a;  4WCE W;  1M90 X; 
#chains in the Genus database with same CATH topology
 5DM7 W;  4WFA W;  3G4S W;  5GAD a;  1YI2 W;  1MWT A;  1QVG V;  3CCM W;  3CMA W;  3I55 W;  1M1K X;  3O2H A;  1BXY A;  1N8R X;  3ZG5 A;  1MBX C;  3W7T A;  5JVH W;  3OW2 V;  2OTJ W;  1VQ8 W;  4DKI A;  1KC8 X;  1Q82 X;  1VQM W;  1Q81 X;  5GAG a;  2ZJP W;  3I56 W;  1Q86 X;  3G3P A;  5M18 A;  1MWR A;  2WA8 A;  1KD1 X;  1VQP W;  3CCE W;  1K8A X;  1VQQ A;  3CCS W;  1NJI X;  1RQV A;  3PIO W;  1K73 X;  1DD3 A;  4CJN A;  2W9R A;  3CPW V;  3G1B A;  1YIT W;  3CD6 W;  1VQ9 W;  3G6E W;  4YJX A;  5CA3 A;  3O2B A;  2OTL W;  1S72 W;  4C1N A;  1KQS V;  2QEX W;  3D3I A;  3G19 A;  3CME W;  3ZG0 A;  1MWS A;  1JJ2 V;  1VQ6 W;  3J7Z Z;  3CCR W;  5JVG W;  3CCQ W;  3W7X A;  1YJW W;  1VQK W;  3DLL W;  1YJ9 W;  3ZFZ A;  1YHQ W;  1LZW A;  5HL7 W;  4YJM A;  1CTF A;  4BL2 A;  1K9M X;  1VQ5 W;  4WFN W;  4IO9 W;  3PIP W;  2ZJR W;  1RQS A;  1R6O C;  1VQN W;  3G71 W;  1VQO W;  3CCL W;  3CCU W;  1VQ7 W;  3CC4 W;  4WFB W;  3O1F A;  4IOA W;  3GQ0 A;  1MBV B;  1YIJ W;  2QA4 W;  1MWU A;  3CF5 W;  1W2B V;  4UY8 Z;  1VQL W;  3DNJ A;  4WF9 W;  1RQU A;  2ZJQ W;  3CCJ W;  3CXC V;  1Q7Y X;  4YKA A;  4IOC W;  3W7U A;  3O1F B;  4CPK A;  1YJN W;  4U67 W;  1QVF V;  1VQ4 W;  1MG9 A;  1MBU C;  5GW7 A;  3CC2 W;  3GW1 A;  3CC7 W;  3CCV W;  5M1A A;  5M19 A;  3GQ1 A;  5GAH a;  3W7W A;  3O2O A;  5DM6 W;  4BL3 A;  5GAE a;  1DD4 A;  2WA9 A;  4WCE W;  3W7S A;  1M90 X;  1R6Q C; 
#chains in the Genus database with same CATH homology
 5DM7 W;  4WFA W;  3G4S W;  5GAD a;  1YI2 W;  1QVG V;  3CCM W;  3CMA W;  3I55 W;  1M1K X;  1BXY A;  1N8R X;  5JVH W;  3OW2 V;  2OTJ W;  1VQ8 W;  1KC8 X;  1Q82 X;  1VQM W;  1Q81 X;  5GAG a;  2ZJP W;  3I56 W;  1Q86 X;  1KD1 X;  1VQP W;  3CCE W;  1K8A X;  3CCS W;  1NJI X;  3PIO W;  1K73 X;  3CPW V;  1YIT W;  3CD6 W;  1VQ9 W;  3G6E W;  2OTL W;  1S72 W;  4C1N A;  1KQS V;  2QEX W;  3CME W;  1JJ2 V;  1VQ6 W;  3J7Z Z;  3CCR W;  5JVG W;  3CCQ W;  1YJW W;  1VQK W;  3DLL W;  1YJ9 W;  1YHQ W;  5HL7 W;  1K9M X;  1VQ5 W;  4WFN W;  4IO9 W;  3PIP W;  2ZJR W;  1VQN W;  3G71 W;  1VQO W;  3CCL W;  3CCU W;  1VQ7 W;  3CC4 W;  4WFB W;  4IOA W;  1YIJ W;  2QA4 W;  3CF5 W;  1W2B V;  4UY8 Z;  1VQL W;  4WF9 W;  2ZJQ W;  3CCJ W;  3CXC V;  1Q7Y X;  4IOC W;  1YJN W;  4U67 W;  1QVF V;  1VQ4 W;  3CC2 W;  3CC7 W;  3CCV W;  5GAH a;  5DM6 W;  5GAE a;  4WCE W;  1M90 X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CD6W

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations