3CMAW

The structure of cca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
total genus 48
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3cmaW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3cmaW01
3G4SW 1Q86X 1Q81X 1N8RX 1YI2W 2OTLW 1YJWW 5GAHa 3CCRW 3I55W 1QVGV 1VQ6W 1Q82X 3G71W 4IO9W 1VQ8W 5GAEa 1VQ9W 1VQLW 1VQ5W 3PIPW 1S72W 4WFAW 4WFNW 3I56W 1YJNW 3CCMW 5JVGW 4WCEW 1VQMW 4WFBW 3G6EW 2QA4W 3CCUW 3CCQW 4U67W 1M1KX 4IOAW 1YHQW 1YJ9W 3CMAW 3CC4W 1Q7YX 2ZJRW 2QEXW 1M90X 5GADa 1YITW 3PIOW 3CC7W 4IOCW 2OTJW 3CCVW 3CC2W 5DM7W 3J7ZZ 5DM6W 1BXYA 1K73X 3CMEW 1NJIX 2ZJQW 1KD1X 1VQNW 3CF5W 3CCLW 3CXCV 1K9MX 1W2BV 3CCEW 3CD6W 1K8AX 1QVFV 3DLLW 5HL7W 1YIJW 3CCSW 1VQ7W 3CPWV 1VQPW 1VQOW 1KC8X 3CCJW 3OW2V 2ZJPW 4UY8Z 5GAGa 4WF9W 1VQKW 5JVHW 1JJ2V 1KQSV 1VQ4W
chains in the Genus database with same CATH superfamily
3G4SW 1MWTA 1Q86X 2WA9A 1Q81X 3DNJA 1N8RX 4CPKA 4C1NA 3O2HA 1YI2W 3W7TA 3W7UA 3G1BA 4YJXA 3ZG0A 2OTLW 1YJWW 5GAHa 3CCRW 3I55W 1QVGV 3GQ0A 4DKIA 1CTFA 1VQ6W 1Q82X 3G71W 3W7XA 1MWRA 4IO9W 3O2OA 3GW1A 1VQ8W 5GAEa 1VQ9W 1RQVA 1VQLW 1VQ5W 3PIPW 1S72W 3O2BA 4WFAW 5GW7A 4BL3A 5CA3A 4BL2A 3I56W 1MBUC 1YJNW 4WFNW 3CCMW 5JVGW 4WCEW 1VQMW 4WFBW 3ZG5A 3G6EW 4CJNA 2QA4W 5M19A 3W7SA 1DD4A 1RQSA 4YJMA 3CCUW 3CCQW 2WA8A 4U67W 1MWUA 1M1KX 4IOAW 1YHQW 1YJ9W 1VQQA 3CMAW 3CC4W 3W7WA 1Q7YX 1R6OC 2ZJRW 2QEXW 1M90X 5GADa 1YITW 3PIOW 3CC7W 3G19A 3GQ1A 2OTJW 3CCVW 4IOCW 3CC2W 5DM7W 3O1FA 3J7ZZ 5DM6W 1BXYA 1K73X 3G3PA 3CMEW 1MBVB 1NJIX 2ZJQW 1KD1X 1VQNW 3CF5W 2W9RA 3CCLW 1MBXC 3CXCV 1K9MX 1W2BV 3CCEW 5M18A 1R6QC 3CD6W 1K8AX 1QVFV 3DLLW 3ZFZA 5HL7W 1YIJW 1DD3A 3CCSW 1VQ7W 3CPWV 1VQPW 1VQOW 1KC8X 5M1AA 4YKAA 3CCJW 1LZWA 3OW2V 2ZJPW 3D3IA 1MWSA 4UY8Z 1MG9A 5GAGa 4WF9W 1VQKW 5JVHW 1JJ2V 1RQUA 3O1FB 1KQSV 1VQ4W
chains in the Genus database with same CATH topology
3G4SW 1Q86X 1Q81X 1N8RX 4C1NA 1YI2W 2OTLW 1YJWW 5GAHa 3CCRW 3I55W 1QVGV 1VQ6W 1Q82X 3G71W 4IO9W 1VQ8W 5GAEa 1VQ9W 1VQLW 1VQ5W 3PIPW 1S72W 4WFAW 4WFNW 3I56W 1YJNW 3CCMW 5JVGW 4WCEW 1VQMW 4WFBW 3G6EW 2QA4W 3CCUW 3CCQW 4U67W 1M1KX 4IOAW 1YHQW 1YJ9W 3CMAW 3CC4W 1Q7YX 2ZJRW 2QEXW 1M90X 5GADa 1YITW 3PIOW 3CC7W 4IOCW 2OTJW 3CCVW 3CC2W 5DM7W 3J7ZZ 5DM6W 1BXYA 1K73X 3CMEW 1NJIX 2ZJQW 1KD1X 1VQNW 3CF5W 3CCLW 3CXCV 1K9MX 1W2BV 3CCEW 3CD6W 1K8AX 1QVFV 3DLLW 5HL7W 1YIJW 3CCSW 1VQ7W 3CPWV 1VQPW 1VQOW 1KC8X 3CCJW 3OW2V 2ZJPW 4UY8Z 5GAGa 4WF9W 1VQKW 5JVHW 1JJ2V 1KQSV 1VQ4W
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G4S W;  1Q86 X;  1Q81 X;  1N8R X;  1YI2 W;  2OTL W;  1YJW W;  5GAH a;  3CCR W;  3I55 W;  1QVG V;  1VQ6 W;  1Q82 X;  3G71 W;  4IO9 W;  1VQ8 W;  5GAE a;  1VQ9 W;  1VQL W;  1VQ5 W;  3PIP W;  1S72 W;  4WFA W;  4WFN W;  3I56 W;  1YJN W;  3CCM W;  5JVG W;  4WCE W;  1VQM W;  4WFB W;  3G6E W;  2QA4 W;  3CCU W;  3CCQ W;  4U67 W;  1M1K X;  4IOA W;  1YHQ W;  1YJ9 W;  3CMA W;  3CC4 W;  1Q7Y X;  2ZJR W;  2QEX W;  1M90 X;  5GAD a;  1YIT W;  3PIO W;  3CC7 W;  4IOC W;  2OTJ W;  3CCV W;  3CC2 W;  5DM7 W;  3J7Z Z;  5DM6 W;  1BXY A;  1K73 X;  3CME W;  1NJI X;  2ZJQ W;  1KD1 X;  1VQN W;  3CF5 W;  3CCL W;  3CXC V;  1K9M X;  1W2B V;  3CCE W;  3CD6 W;  1K8A X;  1QVF V;  3DLL W;  5HL7 W;  1YIJ W;  3CCS W;  1VQ7 W;  3CPW V;  1VQP W;  1VQO W;  1KC8 X;  3CCJ W;  3OW2 V;  2ZJP W;  4UY8 Z;  5GAG a;  4WF9 W;  1VQK W;  5JVH W;  1JJ2 V;  1KQS V;  1VQ4 W; 
#chains in the Genus database with same CATH topology
 3G4S W;  1MWT A;  1Q86 X;  2WA9 A;  1Q81 X;  3DNJ A;  1N8R X;  4CPK A;  4C1N A;  3O2H A;  1YI2 W;  3W7T A;  3W7U A;  3G1B A;  4YJX A;  3ZG0 A;  2OTL W;  1YJW W;  5GAH a;  3CCR W;  3I55 W;  1QVG V;  3GQ0 A;  4DKI A;  1CTF A;  1VQ6 W;  1Q82 X;  3G71 W;  3W7X A;  1MWR A;  4IO9 W;  3O2O A;  3GW1 A;  1VQ8 W;  5GAE a;  1VQ9 W;  1RQV A;  1VQL W;  1VQ5 W;  3PIP W;  1S72 W;  3O2B A;  4WFA W;  5GW7 A;  4BL3 A;  5CA3 A;  4BL2 A;  3I56 W;  1MBU C;  1YJN W;  4WFN W;  3CCM W;  5JVG W;  4WCE W;  1VQM W;  4WFB W;  3ZG5 A;  3G6E W;  4CJN A;  2QA4 W;  5M19 A;  3W7S A;  1DD4 A;  1RQS A;  4YJM A;  3CCU W;  3CCQ W;  2WA8 A;  4U67 W;  1MWU A;  1M1K X;  4IOA W;  1YHQ W;  1YJ9 W;  1VQQ A;  3CMA W;  3CC4 W;  3W7W A;  1Q7Y X;  1R6O C;  2ZJR W;  2QEX W;  1M90 X;  5GAD a;  1YIT W;  3PIO W;  3CC7 W;  3G19 A;  3GQ1 A;  2OTJ W;  3CCV W;  4IOC W;  3CC2 W;  5DM7 W;  3O1F A;  3J7Z Z;  5DM6 W;  1BXY A;  1K73 X;  3G3P A;  3CME W;  1MBV B;  1NJI X;  2ZJQ W;  1KD1 X;  1VQN W;  3CF5 W;  2W9R A;  3CCL W;  1MBX C;  3CXC V;  1K9M X;  1W2B V;  3CCE W;  5M18 A;  1R6Q C;  3CD6 W;  1K8A X;  1QVF V;  3DLL W;  3ZFZ A;  5HL7 W;  1YIJ W;  1DD3 A;  3CCS W;  1VQ7 W;  3CPW V;  1VQP W;  1VQO W;  1KC8 X;  5M1A A;  4YKA A;  3CCJ W;  1LZW A;  3OW2 V;  2ZJP W;  3D3I A;  1MWS A;  4UY8 Z;  1MG9 A;  5GAG a;  4WF9 W;  1VQK W;  5JVH W;  1JJ2 V;  1RQU A;  3O1F B;  1KQS V;  1VQ4 W; 
#chains in the Genus database with same CATH homology
 3G4S W;  1Q86 X;  1Q81 X;  1N8R X;  4C1N A;  1YI2 W;  2OTL W;  1YJW W;  5GAH a;  3CCR W;  3I55 W;  1QVG V;  1VQ6 W;  1Q82 X;  3G71 W;  4IO9 W;  1VQ8 W;  5GAE a;  1VQ9 W;  1VQL W;  1VQ5 W;  3PIP W;  1S72 W;  4WFA W;  4WFN W;  3I56 W;  1YJN W;  3CCM W;  5JVG W;  4WCE W;  1VQM W;  4WFB W;  3G6E W;  2QA4 W;  3CCU W;  3CCQ W;  4U67 W;  1M1K X;  4IOA W;  1YHQ W;  1YJ9 W;  3CMA W;  3CC4 W;  1Q7Y X;  2ZJR W;  2QEX W;  1M90 X;  5GAD a;  1YIT W;  3PIO W;  3CC7 W;  4IOC W;  2OTJ W;  3CCV W;  3CC2 W;  5DM7 W;  3J7Z Z;  5DM6 W;  1BXY A;  1K73 X;  3CME W;  1NJI X;  2ZJQ W;  1KD1 X;  1VQN W;  3CF5 W;  3CCL W;  3CXC V;  1K9M X;  1W2B V;  3CCE W;  3CD6 W;  1K8A X;  1QVF V;  3DLL W;  5HL7 W;  1YIJ W;  3CCS W;  1VQ7 W;  3CPW V;  1VQP W;  1VQO W;  1KC8 X;  3CCJ W;  3OW2 V;  2ZJP W;  4UY8 Z;  5GAG a;  4WF9 W;  1VQK W;  5JVH W;  1JJ2 V;  1KQS V;  1VQ4 W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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