3CMEW

The structure of ca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 49
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3cmeW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3cmeW01
1YHQW 1VQ6W 1JJ2V 1QVGV 1KD1X 1KQSV 3J7ZZ 3I55W 1VQ5W 1VQ8W 4IOAW 5JVGW 1YJNW 3CD6W 1VQMW 1K8AX 3CMEW 4WFNW 3CCJW 3CMAW 1Q82X 4WCEW 4UY8Z 1VQKW 2ZJQW 1YIJW 1Q81X 1VQPW 3CCVW 3CCLW 1VQ9W 2OTLW 4WFBW 1K9MX 2ZJRW 4IOCW 1Q7YX 1YITW 1Q86X 1N8RX 4IO9W 3DLLW 3G6EW 3CC4W 3PIPW 5DM7W 1VQ7W 3CCQW 3OW2V 3CXCV 2QEXW 1NJIX 5GADa 5GAGa 1K73X 4WF9W 4U67W 1VQNW 5GAEa 2ZJPW 3CC7W 3PIOW 3G71W 3CC2W 2QA4W 1YJWW 1M1KX 3CCMW 1VQ4W 2OTJW 3CCSW 3CCUW 4WFAW 1W2BV 3G4SW 3CCRW 1VQOW 3CPWV 3I56W 1BXYA 5HL7W 3CF5W 1M90X 1YJ9W 5GAHa 1VQLW 3CCEW 1QVFV 1S72W 5DM6W 5JVHW 1YI2W 1KC8X
chains in the Genus database with same CATH superfamily
1YHQW 1VQ6W 1R6QC 3W7TA 1DD3A 1JJ2V 1QVGV 5M19A 1KD1X 3G1BA 4CPKA 1KQSV 1R6OC 3J7ZZ 3I55W 1VQ5W 1VQ8W 4BL3A 4IOAW 5JVGW 1MWRA 1YJNW 3CD6W 1VQMW 1K8AX 3CMEW 3O1FA 4WFNW 3CCJW 3CMAW 1Q82X 4WCEW 3GQ0A 4YKAA 1VQKW 2ZJQW 4UY8Z 1YIJW 1Q81X 1VQPW 3GQ1A 3CCVW 4YJMA 3CCLW 1VQ9W 2WA9A 3ZG0A 2OTLW 4WFBW 1K9MX 2ZJRW 4IOCW 1Q7YX 1YITW 1Q86X 1LZWA 1N8RX 4IO9W 5GW7A 3DLLW 3G6EW 3O2HA 3G19A 3CC4W 3PIPW 1MBUC 5DM7W 1VQ7W 3CCQW 3OW2V 3CXCV 1MG9A 2QEXW 3W7UA 3W7WA 1MBVB 1NJIX 5GADa 5GAGa 1K73X 4WF9W 4YJXA 4U67W 1VQNW 5GAEa 2ZJPW 3CC7W 1MBXC 5M18A 3PIOW 3G71W 1RQUA 3O2OA 3CC2W 1DD4A 3ZFZA 2QA4W 1YJWW 1M1KX 3CCMW 1VQ4W 2OTJW 3CCSW 4CJNA 1RQVA 4BL2A 1MWUA 3CCUW 3G3PA 4DKIA 4WFAW 3W7SA 1W2BV 3G4SW 3CCRW 1VQOW 3CPWV 3W7XA 5CA3A 4C1NA 3I56W 1VQQA 1CTFA 1BXYA 5HL7W 3CF5W 3GW1A 3O2BA 1M90X 3O1FB 5M1AA 1YJ9W 2W9RA 3DNJA 5GAHa 1RQSA 1VQLW 3CCEW 1QVFV 1S72W 3D3IA 3ZG5A 5DM6W 1MWTA 1MWSA 5JVHW 1YI2W 1KC8X 2WA8A
chains in the Genus database with same CATH topology
1YHQW 1VQ6W 1JJ2V 1QVGV 1KD1X 1KQSV 3J7ZZ 3I55W 1VQ5W 1VQ8W 4IOAW 5JVGW 1YJNW 3CD6W 1VQMW 1K8AX 3CMEW 4WFNW 3CCJW 3CMAW 1Q82X 4WCEW 4UY8Z 1VQKW 2ZJQW 1YIJW 1Q81X 1VQPW 3CCVW 3CCLW 1VQ9W 2OTLW 4WFBW 1K9MX 2ZJRW 4IOCW 1Q7YX 1YITW 1Q86X 1N8RX 4IO9W 3DLLW 3G6EW 3CC4W 3PIPW 5DM7W 1VQ7W 3CCQW 3OW2V 3CXCV 2QEXW 1NJIX 5GADa 5GAGa 1K73X 4WF9W 4U67W 1VQNW 5GAEa 2ZJPW 3CC7W 3PIOW 3G71W 3CC2W 2QA4W 1YJWW 1M1KX 3CCMW 1VQ4W 2OTJW 3CCSW 3CCUW 4WFAW 1W2BV 3G4SW 3CCRW 1VQOW 3CPWV 4C1NA 3I56W 1BXYA 5HL7W 3CF5W 1M90X 1YJ9W 5GAHa 1VQLW 3CCEW 1QVFV 1S72W 5DM6W 5JVHW 1YI2W 1KC8X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YHQ W;  1VQ6 W;  1JJ2 V;  1QVG V;  1KD1 X;  1KQS V;  3J7Z Z;  3I55 W;  1VQ5 W;  1VQ8 W;  4IOA W;  5JVG W;  1YJN W;  3CD6 W;  1VQM W;  1K8A X;  3CME W;  4WFN W;  3CCJ W;  3CMA W;  1Q82 X;  4WCE W;  4UY8 Z;  1VQK W;  2ZJQ W;  1YIJ W;  1Q81 X;  1VQP W;  3CCV W;  3CCL W;  1VQ9 W;  2OTL W;  4WFB W;  1K9M X;  2ZJR W;  4IOC W;  1Q7Y X;  1YIT W;  1Q86 X;  1N8R X;  4IO9 W;  3DLL W;  3G6E W;  3CC4 W;  3PIP W;  5DM7 W;  1VQ7 W;  3CCQ W;  3OW2 V;  3CXC V;  2QEX W;  1NJI X;  5GAD a;  5GAG a;  1K73 X;  4WF9 W;  4U67 W;  1VQN W;  5GAE a;  2ZJP W;  3CC7 W;  3PIO W;  3G71 W;  3CC2 W;  2QA4 W;  1YJW W;  1M1K X;  3CCM W;  1VQ4 W;  2OTJ W;  3CCS W;  3CCU W;  4WFA W;  1W2B V;  3G4S W;  3CCR W;  1VQO W;  3CPW V;  3I56 W;  1BXY A;  5HL7 W;  3CF5 W;  1M90 X;  1YJ9 W;  5GAH a;  1VQL W;  3CCE W;  1QVF V;  1S72 W;  5DM6 W;  5JVH W;  1YI2 W;  1KC8 X; 
#chains in the Genus database with same CATH topology
 1YHQ W;  1VQ6 W;  1R6Q C;  3W7T A;  1DD3 A;  1JJ2 V;  1QVG V;  5M19 A;  1KD1 X;  3G1B A;  4CPK A;  1KQS V;  1R6O C;  3J7Z Z;  3I55 W;  1VQ5 W;  1VQ8 W;  4BL3 A;  4IOA W;  5JVG W;  1MWR A;  1YJN W;  3CD6 W;  1VQM W;  1K8A X;  3CME W;  3O1F A;  4WFN W;  3CCJ W;  3CMA W;  1Q82 X;  4WCE W;  3GQ0 A;  4YKA A;  1VQK W;  2ZJQ W;  4UY8 Z;  1YIJ W;  1Q81 X;  1VQP W;  3GQ1 A;  3CCV W;  4YJM A;  3CCL W;  1VQ9 W;  2WA9 A;  3ZG0 A;  2OTL W;  4WFB W;  1K9M X;  2ZJR W;  4IOC W;  1Q7Y X;  1YIT W;  1Q86 X;  1LZW A;  1N8R X;  4IO9 W;  5GW7 A;  3DLL W;  3G6E W;  3O2H A;  3G19 A;  3CC4 W;  3PIP W;  1MBU C;  5DM7 W;  1VQ7 W;  3CCQ W;  3OW2 V;  3CXC V;  1MG9 A;  2QEX W;  3W7U A;  3W7W A;  1MBV B;  1NJI X;  5GAD a;  5GAG a;  1K73 X;  4WF9 W;  4YJX A;  4U67 W;  1VQN W;  5GAE a;  2ZJP W;  3CC7 W;  1MBX C;  5M18 A;  3PIO W;  3G71 W;  1RQU A;  3O2O A;  3CC2 W;  1DD4 A;  3ZFZ A;  2QA4 W;  1YJW W;  1M1K X;  3CCM W;  1VQ4 W;  2OTJ W;  3CCS W;  4CJN A;  1RQV A;  4BL2 A;  1MWU A;  3CCU W;  3G3P A;  4DKI A;  4WFA W;  3W7S A;  1W2B V;  3G4S W;  3CCR W;  1VQO W;  3CPW V;  3W7X A;  5CA3 A;  4C1N A;  3I56 W;  1VQQ A;  1CTF A;  1BXY A;  5HL7 W;  3CF5 W;  3GW1 A;  3O2B A;  1M90 X;  3O1F B;  5M1A A;  1YJ9 W;  2W9R A;  3DNJ A;  5GAH a;  1RQS A;  1VQL W;  3CCE W;  1QVF V;  1S72 W;  3D3I A;  3ZG5 A;  5DM6 W;  1MWT A;  1MWS A;  5JVH W;  1YI2 W;  1KC8 X;  2WA8 A; 
#chains in the Genus database with same CATH homology
 1YHQ W;  1VQ6 W;  1JJ2 V;  1QVG V;  1KD1 X;  1KQS V;  3J7Z Z;  3I55 W;  1VQ5 W;  1VQ8 W;  4IOA W;  5JVG W;  1YJN W;  3CD6 W;  1VQM W;  1K8A X;  3CME W;  4WFN W;  3CCJ W;  3CMA W;  1Q82 X;  4WCE W;  4UY8 Z;  1VQK W;  2ZJQ W;  1YIJ W;  1Q81 X;  1VQP W;  3CCV W;  3CCL W;  1VQ9 W;  2OTL W;  4WFB W;  1K9M X;  2ZJR W;  4IOC W;  1Q7Y X;  1YIT W;  1Q86 X;  1N8R X;  4IO9 W;  3DLL W;  3G6E W;  3CC4 W;  3PIP W;  5DM7 W;  1VQ7 W;  3CCQ W;  3OW2 V;  3CXC V;  2QEX W;  1NJI X;  5GAD a;  5GAG a;  1K73 X;  4WF9 W;  4U67 W;  1VQN W;  5GAE a;  2ZJP W;  3CC7 W;  3PIO W;  3G71 W;  3CC2 W;  2QA4 W;  1YJW W;  1M1K X;  3CCM W;  1VQ4 W;  2OTJ W;  3CCS W;  3CCU W;  4WFA W;  1W2B V;  3G4S W;  3CCR W;  1VQO W;  3CPW V;  4C1N A;  3I56 W;  1BXY A;  5HL7 W;  3CF5 W;  1M90 X;  1YJ9 W;  5GAH a;  1VQL W;  3CCE W;  1QVF V;  1S72 W;  5DM6 W;  5JVH W;  1YI2 W;  1KC8 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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