3CMEW

The structure of ca and cca-phe-cap-bio bound to the large ribosomal subunit of haloarcula marismortui
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 49
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2008-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3cmeW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 3cmeW01
1Q82X 3CCUW 3CC4W 1JJ2V 1VQLW 4UY8Z 3DLLW 5GAGa 1Q7YX 5DM6W 3PIPW 1N8RX 5GAHa 1VQPW 3CCQW 5DM7W 3CD6W 2QEXW 1KQSV 1VQMW 3CC7W 2ZJRW 1YJ9W 3CCSW 3CCLW 1K73X 3G6EW 1W2BV 3PIOW 1YI2W 1M1KX 1QVGV 1S72W 4IOAW 1YJWW 5GAEa 5JVHW 3CCVW 3CCJW 1KD1X 1BXYA 1Q86X 1M90X 1YITW 5JVGW 1QVFV 2OTLW 1Q81X 3I55W 2ZJPW 4IO9W 1NJIX 1YIJW 1VQ8W 1YHQW 1VQOW 3J7ZZ 3CCMW 1KC8X 1VQ5W 1VQ9W 2ZJQW 3CCEW 3CMEW 2QA4W 1VQ4W 4U67W 3CXCV 1YJNW 1K9MX 4WFBW 1K8AX 1VQKW 4WFNW 3I56W 5GADa 3CF5W 3OW2V 1VQ7W 2OTJW 3CPWV 4WFAW 4WF9W 4IOCW 3G4SW 3CMAW 5HL7W 4WCEW 3CCRW 1VQNW 1VQ6W 3CC2W 3G71W
chains in the Genus database with same CATH superfamily
3W7SA 1Q82X 2WA8A 4YJXA 3CCUW 3CC4W 2W9RA 1JJ2V 1VQLW 4UY8Z 3DLLW 5GAGa 1Q7YX 3GQ0A 5DM6W 3G1BA 4YKAA 1LZWA 3D3IA 3PIPW 1N8RX 5GAHa 1VQPW 3CCQW 5DM7W 1MBVB 3CD6W 2QEXW 1MWUA 1KQSV 1VQMW 3CC7W 2ZJRW 1YJ9W 3CCSW 3CCLW 5CA3A 1DD4A 4CJNA 1K73X 3G6EW 1MWRA 1W2BV 3PIOW 1YI2W 1M1KX 1MG9A 1QVGV 3O2BA 1RQUA 1S72W 4IOAW 4CPKA 1YJWW 3G19A 5GAEa 5JVHW 1MBUC 3CCVW 4YJMA 3CCJW 1MWTA 1KD1X 1BXYA 1Q86X 3ZG5A 5M19A 1CTFA 5GW7A 4C1NA 1M90X 1YITW 5JVGW 1QVFV 3GW1A 1R6OC 2OTLW 1Q81X 3I55W 2ZJPW 4IO9W 3W7WA 4DKIA 1NJIX 1YIJW 5M1AA 1VQ8W 1YHQW 1VQOW 3J7ZZ 1RQVA 3O2HA 2WA9A 3G3PA 3O1FA 3CCMW 1KC8X 1VQ5W 1VQ9W 1MWSA 3CCEW 2ZJQW 3CMEW 2QA4W 1VQQA 1VQ4W 4U67W 3CXCV 1YJNW 1K9MX 4WFBW 1DD3A 3W7TA 1K8AX 3DNJA 1VQKW 4WFNW 3I56W 4BL2A 3W7UA 5GADa 1MBXC 1RQSA 3CF5W 3O2OA 3OW2V 1VQ7W 3GQ1A 3O1FB 2OTJW 1R6QC 3CPWV 4WFAW 4WF9W 4IOCW 3G4SW 5M18A 3ZFZA 3ZG0A 3CMAW 5HL7W 4WCEW 3CCRW 1VQNW 4BL3A 1VQ6W 3CC2W 3G71W 3W7XA
chains in the Genus database with same CATH topology
1Q82X 3CCUW 3CC4W 1JJ2V 1VQLW 4UY8Z 3DLLW 5GAGa 1Q7YX 5DM6W 3PIPW 1N8RX 5GAHa 1VQPW 3CCQW 5DM7W 3CD6W 2QEXW 1KQSV 1VQMW 3CC7W 2ZJRW 1YJ9W 3CCSW 3CCLW 1K73X 3G6EW 1W2BV 3PIOW 1YI2W 1M1KX 1QVGV 1S72W 4IOAW 1YJWW 5GAEa 5JVHW 3CCVW 3CCJW 1KD1X 1BXYA 1Q86X 4C1NA 1M90X 1YITW 5JVGW 1QVFV 2OTLW 1Q81X 3I55W 2ZJPW 4IO9W 1NJIX 1YIJW 1VQ8W 1YHQW 1VQOW 3J7ZZ 3CCMW 1KC8X 1VQ5W 1VQ9W 2ZJQW 3CCEW 3CMEW 2QA4W 1VQ4W 4U67W 3CXCV 1YJNW 1K9MX 4WFBW 1K8AX 1VQKW 4WFNW 3I56W 5GADa 3CF5W 3OW2V 1VQ7W 2OTJW 3CPWV 4WFAW 4WF9W 4IOCW 3G4SW 3CMAW 5HL7W 4WCEW 3CCRW 1VQNW 1VQ6W 3CC2W 3G71W
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q82 X;  3CCU W;  3CC4 W;  1JJ2 V;  1VQL W;  4UY8 Z;  3DLL W;  5GAG a;  1Q7Y X;  5DM6 W;  3PIP W;  1N8R X;  5GAH a;  1VQP W;  3CCQ W;  5DM7 W;  3CD6 W;  2QEX W;  1KQS V;  1VQM W;  3CC7 W;  2ZJR W;  1YJ9 W;  3CCS W;  3CCL W;  1K73 X;  3G6E W;  1W2B V;  3PIO W;  1YI2 W;  1M1K X;  1QVG V;  1S72 W;  4IOA W;  1YJW W;  5GAE a;  5JVH W;  3CCV W;  3CCJ W;  1KD1 X;  1BXY A;  1Q86 X;  1M90 X;  1YIT W;  5JVG W;  1QVF V;  2OTL W;  1Q81 X;  3I55 W;  2ZJP W;  4IO9 W;  1NJI X;  1YIJ W;  1VQ8 W;  1YHQ W;  1VQO W;  3J7Z Z;  3CCM W;  1KC8 X;  1VQ5 W;  1VQ9 W;  2ZJQ W;  3CCE W;  3CME W;  2QA4 W;  1VQ4 W;  4U67 W;  3CXC V;  1YJN W;  1K9M X;  4WFB W;  1K8A X;  1VQK W;  4WFN W;  3I56 W;  5GAD a;  3CF5 W;  3OW2 V;  1VQ7 W;  2OTJ W;  3CPW V;  4WFA W;  4WF9 W;  4IOC W;  3G4S W;  3CMA W;  5HL7 W;  4WCE W;  3CCR W;  1VQN W;  1VQ6 W;  3CC2 W;  3G71 W; 
#chains in the Genus database with same CATH topology
 3W7S A;  1Q82 X;  2WA8 A;  4YJX A;  3CCU W;  3CC4 W;  2W9R A;  1JJ2 V;  1VQL W;  4UY8 Z;  3DLL W;  5GAG a;  1Q7Y X;  3GQ0 A;  5DM6 W;  3G1B A;  4YKA A;  1LZW A;  3D3I A;  3PIP W;  1N8R X;  5GAH a;  1VQP W;  3CCQ W;  5DM7 W;  1MBV B;  3CD6 W;  2QEX W;  1MWU A;  1KQS V;  1VQM W;  3CC7 W;  2ZJR W;  1YJ9 W;  3CCS W;  3CCL W;  5CA3 A;  1DD4 A;  4CJN A;  1K73 X;  3G6E W;  1MWR A;  1W2B V;  3PIO W;  1YI2 W;  1M1K X;  1MG9 A;  1QVG V;  3O2B A;  1RQU A;  1S72 W;  4IOA W;  4CPK A;  1YJW W;  3G19 A;  5GAE a;  5JVH W;  1MBU C;  3CCV W;  4YJM A;  3CCJ W;  1MWT A;  1KD1 X;  1BXY A;  1Q86 X;  3ZG5 A;  5M19 A;  1CTF A;  5GW7 A;  4C1N A;  1M90 X;  1YIT W;  5JVG W;  1QVF V;  3GW1 A;  1R6O C;  2OTL W;  1Q81 X;  3I55 W;  2ZJP W;  4IO9 W;  3W7W A;  4DKI A;  1NJI X;  1YIJ W;  5M1A A;  1VQ8 W;  1YHQ W;  1VQO W;  3J7Z Z;  1RQV A;  3O2H A;  2WA9 A;  3G3P A;  3O1F A;  3CCM W;  1KC8 X;  1VQ5 W;  1VQ9 W;  1MWS A;  3CCE W;  2ZJQ W;  3CME W;  2QA4 W;  1VQQ A;  1VQ4 W;  4U67 W;  3CXC V;  1YJN W;  1K9M X;  4WFB W;  1DD3 A;  3W7T A;  1K8A X;  3DNJ A;  1VQK W;  4WFN W;  3I56 W;  4BL2 A;  3W7U A;  5GAD a;  1MBX C;  1RQS A;  3CF5 W;  3O2O A;  3OW2 V;  1VQ7 W;  3GQ1 A;  3O1F B;  2OTJ W;  1R6Q C;  3CPW V;  4WFA W;  4WF9 W;  4IOC W;  3G4S W;  5M18 A;  3ZFZ A;  3ZG0 A;  3CMA W;  5HL7 W;  4WCE W;  3CCR W;  1VQN W;  4BL3 A;  1VQ6 W;  3CC2 W;  3G71 W;  3W7X A; 
#chains in the Genus database with same CATH homology
 1Q82 X;  3CCU W;  3CC4 W;  1JJ2 V;  1VQL W;  4UY8 Z;  3DLL W;  5GAG a;  1Q7Y X;  5DM6 W;  3PIP W;  1N8R X;  5GAH a;  1VQP W;  3CCQ W;  5DM7 W;  3CD6 W;  2QEX W;  1KQS V;  1VQM W;  3CC7 W;  2ZJR W;  1YJ9 W;  3CCS W;  3CCL W;  1K73 X;  3G6E W;  1W2B V;  3PIO W;  1YI2 W;  1M1K X;  1QVG V;  1S72 W;  4IOA W;  1YJW W;  5GAE a;  5JVH W;  3CCV W;  3CCJ W;  1KD1 X;  1BXY A;  1Q86 X;  4C1N A;  1M90 X;  1YIT W;  5JVG W;  1QVF V;  2OTL W;  1Q81 X;  3I55 W;  2ZJP W;  4IO9 W;  1NJI X;  1YIJ W;  1VQ8 W;  1YHQ W;  1VQO W;  3J7Z Z;  3CCM W;  1KC8 X;  1VQ5 W;  1VQ9 W;  2ZJQ W;  3CCE W;  3CME W;  2QA4 W;  1VQ4 W;  4U67 W;  3CXC V;  1YJN W;  1K9M X;  4WFB W;  1K8A X;  1VQK W;  4WFN W;  3I56 W;  5GAD a;  3CF5 W;  3OW2 V;  1VQ7 W;  2OTJ W;  3CPW V;  4WFA W;  4WF9 W;  4IOC W;  3G4S W;  3CMA W;  5HL7 W;  4WCE W;  3CCR W;  1VQN W;  1VQ6 W;  3CC2 W;  3G71 W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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