3CPW | Genus

Total Genus 50

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Crystal Structure of the Oxazolidinone Antibiotic Linezolid Bound to the 50S Ribosomal Subunit pubmed doi rcsb
molecule keywords	23S RIBOSOMAL RNA
total genus	50
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2008-04-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
V	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3cpwV02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	3cpwV01

3G4SW 3CCJW 1K73X 1Q81X 3CF5W 1YI2W 3G71W 3CC2W 5GAHa 3I55W 1VQ8W 1VQMW 1VQOW 1QVFV 1VQ6W 1VQPW 3CPWV 3CCEW 3CD6W 4WFNW 5JVGW 5GAGa 2QA4W 3CXCV 3PIPW 5DM7W 1N8RX 4WFBW 1KC8X 1YJ9W 1YJNW 1QVGV 1YIJW 2OTLW 3CCMW 3CCSW 1VQ9W 3PIOW 4IO9W 4IOCW 5GADa 3CC4W 3CCRW 1Q7YX 1M1KX 3CCVW 2QEXW 1Q82X 1VQNW 4WFAW 1K9MX 4IOAW 3G6EW 1KQSV 1Q86X 1VQKW 2OTJW 1BXYA 5JVHW 1S72W 1K8AX 3I56W 3CMAW 1VQ5W 1VQLW 3CC7W 1W2BV 4WF9W 5DM6W 1M90X 3CCLW 1VQ4W 3CMEW 1JJ2V 1KD1X 3DLLW 3OW2V 5HL7W 3CCUW 2ZJRW 5GAEa 3CCQW 2ZJQW 1YJWW 1NJIX 1YHQW 4U67W 4WCEW 3J7ZZ 1VQ7W 2ZJPW 1YITW 4UY8Z
chains in the Genus database with same CATH superfamily

3G4SW 3CCJW 1K73X 2W9RA 1RQSA 3O2BA 1Q81X 3GQ1A 3CF5W 1VQQA 1YI2W 3G71W 5M1AA 4DKIA 3CC2W 1MG9A 5GAHa 3O1FB 3I55W 3G1BA 1LZWA 1VQ8W 1VQMW 1VQOW 1QVFV 1DD4A 5CA3A 3O1FA 1VQ6W 1VQPW 3CPWV 3CCEW 3CD6W 1DD3A 1MWTA 4YJXA 4WFNW 3ZG5A 5JVGW 5GAGa 2QA4W 2WA9A 4BL2A 3CXCV 4YKAA 3G3PA 4CPKA 3PIPW 5DM7W 1N8RX 3W7TA 4CJNA 4WFBW 3GQ0A 1KC8X 1YJ9W 1YJNW 1QVGV 1YIJW 3DNJA 3W7UA 2OTLW 3ZG0A 3CCMW 3CCSW 1RQVA 1VQ9W 3PIOW 4IO9W 4IOCW 5GADa 4BL3A 1RQUA 3CC4W 3CCRW 1CTFA 3O2HA 1MWUA 1Q7YX 1M1KX 3CCVW 2QEXW 1Q82X 1VQNW 1MBVB 3O2OA 4WFAW 1K9MX 4IOAW 3G6EW 1KQSV 3W7WA 1Q86X 1VQKW 2OTJW 1BXYA 5JVHW 1S72W 1MBUC 3ZFZA 1K8AX 1MBXC 3G19A 3I56W 3CMAW 1VQ5W 4C1NA 1R6OC 1VQLW 3CC7W 1W2BV 4WF9W 1M90X 5M19A 5DM6W 3CCLW 1VQ4W 3CMEW 3D3IA 5GW7A 2WA8A 1JJ2V 1KD1X 3DLLW 3OW2V 1MWSA 5HL7W 3CCUW 2ZJRW 5GAEa 3CCQW 2ZJQW 3W7XA 3GW1A 4YJMA 1YJWW 1NJIX 1YHQW 4U67W 1R6QC 4WCEW 3J7ZZ 1VQ7W 5M18A 2ZJPW 1YITW 3W7SA 4UY8Z 1MWRA
chains in the Genus database with same CATH topology

3G4SW 3CCJW 1K73X 1Q81X 3CF5W 1YI2W 3G71W 3CC2W 5GAHa 3I55W 1VQ8W 1VQMW 1VQOW 1QVFV 1VQ6W 1VQPW 3CPWV 3CCEW 3CD6W 4WFNW 5JVGW 5GAGa 2QA4W 3CXCV 3PIPW 5DM7W 1N8RX 4WFBW 1KC8X 1YJ9W 1YJNW 1QVGV 1YIJW 2OTLW 3CCMW 3CCSW 1VQ9W 3PIOW 4IO9W 4IOCW 5GADa 3CC4W 3CCRW 1Q7YX 1M1KX 3CCVW 2QEXW 1Q82X 1VQNW 4WFAW 1K9MX 4IOAW 3G6EW 1KQSV 1Q86X 1VQKW 2OTJW 1BXYA 5JVHW 1S72W 1K8AX 3I56W 3CMAW 1VQ5W 4C1NA 1VQLW 3CC7W 1W2BV 4WF9W 5DM6W 1M90X 3CCLW 1VQ4W 3CMEW 1JJ2V 1KD1X 3DLLW 3OW2V 5HL7W 3CCUW 2ZJRW 5GAEa 3CCQW 2ZJQW 1YJWW 1NJIX 1YHQW 4U67W 4WCEW 3J7ZZ 1VQ7W 2ZJPW 1YITW 4UY8Z
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3G4S W;  3CCJ W;  1K73 X;  1Q81 X;  3CF5 W;  1YI2 W;  3G71 W;  3CC2 W;  5GAH a;  3I55 W;  1VQ8 W;  1VQM W;  1VQO W;  1QVF V;  1VQ6 W;  1VQP W;  3CPW V;  3CCE W;  3CD6 W;  4WFN W;  5JVG W;  5GAG a;  2QA4 W;  3CXC V;  3PIP W;  5DM7 W;  1N8R X;  4WFB W;  1KC8 X;  1YJ9 W;  1YJN W;  1QVG V;  1YIJ W;  2OTL W;  3CCM W;  3CCS W;  1VQ9 W;  3PIO W;  4IO9 W;  4IOC W;  5GAD a;  3CC4 W;  3CCR W;  1Q7Y X;  1M1K X;  3CCV W;  2QEX W;  1Q82 X;  1VQN W;  4WFA W;  1K9M X;  4IOA W;  3G6E W;  1KQS V;  1Q86 X;  1VQK W;  2OTJ W;  1BXY A;  5JVH W;  1S72 W;  1K8A X;  3I56 W;  3CMA W;  1VQ5 W;  1VQL W;  3CC7 W;  1W2B V;  4WF9 W;  5DM6 W;  1M90 X;  3CCL W;  1VQ4 W;  3CME W;  1JJ2 V;  1KD1 X;  3DLL W;  3OW2 V;  5HL7 W;  3CCU W;  2ZJR W;  5GAE a;  3CCQ W;  2ZJQ W;  1YJW W;  1NJI X;  1YHQ W;  4U67 W;  4WCE W;  3J7Z Z;  1VQ7 W;  2ZJP W;  1YIT W;  4UY8 Z; 
#chains in the Genus database with same CATH topology
 3G4S W;  3CCJ W;  1K73 X;  2W9R A;  1RQS A;  3O2B A;  1Q81 X;  3GQ1 A;  3CF5 W;  1VQQ A;  1YI2 W;  3G71 W;  5M1A A;  4DKI A;  3CC2 W;  1MG9 A;  5GAH a;  3O1F B;  3I55 W;  3G1B A;  1LZW A;  1VQ8 W;  1VQM W;  1VQO W;  1QVF V;  1DD4 A;  5CA3 A;  3O1F A;  1VQ6 W;  1VQP W;  3CPW V;  3CCE W;  3CD6 W;  1DD3 A;  1MWT A;  4YJX A;  4WFN W;  3ZG5 A;  5JVG W;  5GAG a;  2QA4 W;  2WA9 A;  4BL2 A;  3CXC V;  4YKA A;  3G3P A;  4CPK A;  3PIP W;  5DM7 W;  1N8R X;  3W7T A;  4CJN A;  4WFB W;  3GQ0 A;  1KC8 X;  1YJ9 W;  1YJN W;  1QVG V;  1YIJ W;  3DNJ A;  3W7U A;  2OTL W;  3ZG0 A;  3CCM W;  3CCS W;  1RQV A;  1VQ9 W;  3PIO W;  4IO9 W;  4IOC W;  5GAD a;  4BL3 A;  1RQU A;  3CC4 W;  3CCR W;  1CTF A;  3O2H A;  1MWU A;  1Q7Y X;  1M1K X;  3CCV W;  2QEX W;  1Q82 X;  1VQN W;  1MBV B;  3O2O A;  4WFA W;  1K9M X;  4IOA W;  3G6E W;  1KQS V;  3W7W A;  1Q86 X;  1VQK W;  2OTJ W;  1BXY A;  5JVH W;  1S72 W;  1MBU C;  3ZFZ A;  1K8A X;  1MBX C;  3G19 A;  3I56 W;  3CMA W;  1VQ5 W;  4C1N A;  1R6O C;  1VQL W;  3CC7 W;  1W2B V;  4WF9 W;  1M90 X;  5M19 A;  5DM6 W;  3CCL W;  1VQ4 W;  3CME W;  3D3I A;  5GW7 A;  2WA8 A;  1JJ2 V;  1KD1 X;  3DLL W;  3OW2 V;  1MWS A;  5HL7 W;  3CCU W;  2ZJR W;  5GAE a;  3CCQ W;  2ZJQ W;  3W7X A;  3GW1 A;  4YJM A;  1YJW W;  1NJI X;  1YHQ W;  4U67 W;  1R6Q C;  4WCE W;  3J7Z Z;  1VQ7 W;  5M18 A;  2ZJP W;  1YIT W;  3W7S A;  4UY8 Z;  1MWR A; 
#chains in the Genus database with same CATH homology
 3G4S W;  3CCJ W;  1K73 X;  1Q81 X;  3CF5 W;  1YI2 W;  3G71 W;  3CC2 W;  5GAH a;  3I55 W;  1VQ8 W;  1VQM W;  1VQO W;  1QVF V;  1VQ6 W;  1VQP W;  3CPW V;  3CCE W;  3CD6 W;  4WFN W;  5JVG W;  5GAG a;  2QA4 W;  3CXC V;  3PIP W;  5DM7 W;  1N8R X;  4WFB W;  1KC8 X;  1YJ9 W;  1YJN W;  1QVG V;  1YIJ W;  2OTL W;  3CCM W;  3CCS W;  1VQ9 W;  3PIO W;  4IO9 W;  4IOC W;  5GAD a;  3CC4 W;  3CCR W;  1Q7Y X;  1M1K X;  3CCV W;  2QEX W;  1Q82 X;  1VQN W;  4WFA W;  1K9M X;  4IOA W;  3G6E W;  1KQS V;  1Q86 X;  1VQK W;  2OTJ W;  1BXY A;  5JVH W;  1S72 W;  1K8A X;  3I56 W;  3CMA W;  1VQ5 W;  4C1N A;  1VQL W;  3CC7 W;  1W2B V;  4WF9 W;  5DM6 W;  1M90 X;  3CCL W;  1VQ4 W;  3CME W;  1JJ2 V;  1KD1 X;  3DLL W;  3OW2 V;  5HL7 W;  3CCU W;  2ZJR W;  5GAE a;  3CCQ W;  2ZJQ W;  1YJW W;  1NJI X;  1YHQ W;  4U67 W;  4WCE W;  3J7Z Z;  1VQ7 W;  2ZJP W;  1YIT W;  4UY8 Z;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3CPWV

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations