3D7IA

Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in oxygen detoxification (1591455) from methanococcus jannaschii at 1.75 a resolution
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
97
structure length
97
Chain Sequence
GEGMKVVAAAYPDLYDIIVKLNDTVFTGKTLDYKTQKLIAIGIVASRCDEVAIEKQMKSAMKELGITKEEIADVLRVVLLTSGMPAFTKAMKILEKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Methanocaldococcus jannaschii
publication title Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in oxygen detoxification (1591455) from METHANOCOCCUS JANNASCHII at 1.75 A resolution
rcsb
molecule keywords carboxymuconolactone decarboxylase family protein
total genus 33
structure length 97
sequence length 97
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2008-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3d7iA00
1ME5A 1P8CA 1GU9A 5DIKA 3LVYA 2CWQA 2OUWA 2GMYA 2IJCA 2Q0TA 3D7IA 1LW1A 3C1LA 5DIPA 2QEUA 4G9QA 2O4DA 2AF7A 1KNCA 1VKEA 2PFXA 2OYOA 2PRRA 3BEYA
chains in the Genus database with same CATH superfamily
1ME5A 1P8CA 1GU9A 3AA1A 5DIKA 3LK2A 5ADXK 2ES9A 3LVYA 2KZ7A 2CWQA 2OUWA 2GMYA 2IJCA 3LK3A 2Q0TA 3D7IA 3AA7A 1IZNA 1LW1A 2JN8A 3LK41 3C1LA 3AA6A 3AAAA 3AA0A 5DIPA 2QEUA 4G9QA 2O4DA 5AFUK 2AF7A 3AAEA 1KNCA 4AKRA 1VKEA 2PFXA 2OYOA 2PRRA 2KXPA 3BEYA
chains in the Genus database with same CATH topology
1ME5A 1P8CA 1GU9A 3AA1A 5DIKA 3LK2A 5ADXK 2ES9A 3LVYA 2KZ7A 2CWQA 2OUWA 2GMYA 2IJCA 3LK3A 2Q0TA 3D7IA 3AA7A 1IZNA 1LW1A 2JN8A 3LK41 3C1LA 3AA6A 3AAAA 3AA0A 5DIPA 2QEUA 4G9QA 2O4DA 5AFUK 2AF7A 3AAEA 1KNCA 4AKRA 1VKEA 2PFXA 2OYOA 2PRRA 2KXPA 3BEYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ME5 A;  1P8C A;  1GU9 A;  5DIK A;  3LVY A;  2CWQ A;  2OUW A;  2GMY A;  2IJC A;  2Q0T A;  3D7I A;  1LW1 A;  3C1L A;  5DIP A;  2QEU A;  4G9Q A;  2O4D A;  2AF7 A;  1KNC A;  1VKE A;  2PFX A;  2OYO A;  2PRR A;  3BEY A; 
#chains in the Genus database with same CATH topology
 1ME5 A;  1P8C A;  1GU9 A;  3AA1 A;  5DIK A;  3LK2 A;  5ADX K;  2ES9 A;  3LVY A;  2KZ7 A;  2CWQ A;  2OUW A;  2GMY A;  2IJC A;  3LK3 A;  2Q0T A;  3D7I A;  3AA7 A;  1IZN A;  1LW1 A;  2JN8 A;  3LK4 1;  3C1L A;  3AA6 A;  3AAA A;  3AA0 A;  5DIP A;  2QEU A;  4G9Q A;  2O4D A;  5AFU K;  2AF7 A;  3AAE A;  1KNC A;  4AKR A;  1VKE A;  2PFX A;  2OYO A;  2PRR A;  2KXP A;  3BEY A; 
#chains in the Genus database with same CATH homology
 1ME5 A;  1P8C A;  1GU9 A;  3AA1 A;  5DIK A;  3LK2 A;  5ADX K;  2ES9 A;  3LVY A;  2KZ7 A;  2CWQ A;  2OUW A;  2GMY A;  2IJC A;  3LK3 A;  2Q0T A;  3D7I A;  3AA7 A;  1IZN A;  1LW1 A;  2JN8 A;  3LK4 1;  3C1L A;  3AA6 A;  3AAA A;  3AA0 A;  5DIP A;  2QEU A;  4G9Q A;  2O4D A;  5AFU K;  2AF7 A;  3AAE A;  1KNC A;  4AKR A;  1VKE A;  2PFX A;  2OYO A;  2PRR A;  2KXP A;  3BEY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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