3P1NA

Crystal structure of human 14-3-3 sigma in complex with task-3 peptide
Total Genus 105

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
235
structure length
234
Chain Sequence
AMGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (39-70)AH5 (114-134)EMPTYTII1 (71-74)AH4 (79-104)3H1 (107-110)TIV1 (104-107)3H2 (205-207)AH7 (167-183)AH9 (210-230)AH8 (187-203)AH1 (3-16)AH2 (19-32)AH6 (139-161)TI2 (163-166)Updating...
connected with : NaN
molecule tags Peptide binding protein
source organism Homo sapiens
publication title A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
pubmed doi rcsb
molecule keywords 14-3-3 protein sigma
total genus 105
structure length 234
sequence length 235
ec nomenclature
pdb deposition date 2010-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00244 14-3-3 14-3-3 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.190.20 Mainly Alpha Up-down Bundle Delta-Endotoxin; domain 1 14-3-3 domain 3p1nA00
4IHLA 4DHPA 5LVZA 4Y5IA 3O8IA 2C1JA 4N84A 3SPRA 3SMOA 1YZ5A 1IB1A 2C63A 3P1QA 4JDDA 3SMKA 3UALA 1O9CA 2B05A 1YWTA 4O46A 3EFZA 5LU1A 1QJBA 2C23A 4DHSA 2C1NA 3IQUA 4HKCA 1O9FA 2O8PA 3U9XA 3RDHA 3P1OA 3IQJA 3T0MA 4N7GA 4E2EA 5LHOA 3P1RA 3UX0A 4DHQA 5EWZA 3AXYC 3IQVA 4IEAA 3MHRA 4QLIA 1A4OA 4N7YA 4DX0A 1A37A 4ZDRA 4DHTA 1O9DA 4GNTA 3NKXA 3P1NA 4DAUA 5D2DA 2C74A 3CU8A 5IQPA 3P1SA 3SMLA 4DNKA 5EXAA 4ZQ0A 4JC3A 4J6SA 3T0LA 4Y32A 5F74A 2BTPA 3UZDA 4BG6A 3M50A 2O98A 5BTVA 5HF3A 4DHUA 5LU2A 4Y3BA 1QJAA 2BQ0A 5BY9A 5LX2A 3M51A 1O9EA 2BR9A 2O02A 4FJ3A 4WRQA 3UBWA 4FR3A 4F7RA 3E6YA 1A38A 3SMNA 4DATA 5J31A 4DHMA 2WH0A 4DHNA 2NPMA 3LW1A 4FL5A 4DHOA 5D3EA 3SMMA 5D3FA 4DHRA 3SP5A 3P1PA 2V7DA
chains in the Genus database with same CATH superfamily
4IHLA 4DHPA 5LVZA 3ZHEB 4Y5IA 4MOAA 3O8IA 2C1JA 1I5PA 4N84A 4QX1A 3SPRA 3SMOA 1YZ5A 1IB1A 2C63A 3P1QA 4JDDA 3SMKA 3UALA 2C9KA 1O9CA 2B05A 1YWTA 1JI6A 4O46A 3EFZA 5LU1A 1QJBA 3EB7A 2C23A 4DHSA 2C1NA 3IQUA 4HKCA 1O9FA 2O8PA 1W99A 3X0UA 3U9XA 3RDHA 3P1OA 3IQJA 3T0MA 4N7GA 4E2EA 5LHOA 3P1RA 3UX0A 4DHQA 5EWZA 3AXYC 3IQVA 4IEAA 3I4RA 3MHRA 4QLIA 1A4OA 4N7YA 4DX0A 1A37A 4ZDRA 4DHTA 1O9DA 4GNTA 3NKXA 3P1NA 4DAUA 5D2DA 2C74A 3CU8A 4D8MA 5IQPA 3P1SA 4W8JA 3SMLA 5EXAA 4DNKA 4ZQ0A 4JC3A 4ARYA 4J6SA 3T0LA 1CIYA 4Y32A 5F74A 2BTPA 3CQGA 3UZDA 4BG6A 4QX3A 3M50A 2O98A 5BTVA 5HF3A 4DHUA 5LU2A 4Y3BA 1QJAA 2BQ0A 5BY9A 5LX2A 3M51A 1O9EA 2BR9A 4QX0A 1S2XA 2O02A 4FJ3A 4WRQA 3UBWA 4FR3A 4F7RA 3E6YA 1A38A 3SMNA 4DATA 4QX2A 5J31A 4DHMA 1URJA 2WH0A 4DHNA 2NPMA 1DLCA 3LW1A 4FL5A 4DHOA 5D3EA 3SMMA 5D3FA 4DHRA 3SP5A 3P1PA 2V7DA 4ARXA 3CQCA
chains in the Genus database with same CATH topology
4IHLA 4DHPA 5LVZA 4Y5IA 3O8IA 2C1JA 4N84A 3SPRA 3SMOA 1YZ5A 1IB1A 2C63A 3P1QA 4JDDA 3SMKA 3UALA 1O9CA 2B05A 1YWTA 4O46A 3EFZA 5LU1A 1QJBA 2C23A 4DHSA 2C1NA 3IQUA 4HKCA 1O9FA 2O8PA 3U9XA 3RDHA 3P1OA 3IQJA 3T0MA 4N7GA 4E2EA 5LHOA 3P1RA 3UX0A 4DHQA 5EWZA 3AXYC 3IQVA 4IEAA 3MHRA 4QLIA 1A4OA 4N7YA 4DX0A 1A37A 4ZDRA 4DHTA 1O9DA 4GNTA 3NKXA 3P1NA 4DAUA 5D2DA 2C74A 3CU8A 5IQPA 3P1SA 3SMLA 4DNKA 5EXAA 4ZQ0A 4JC3A 4J6SA 3T0LA 4Y32A 5F74A 2BTPA 3UZDA 4BG6A 3M50A 2O98A 5BTVA 5HF3A 4DHUA 5LU2A 4Y3BA 1QJAA 2BQ0A 5BY9A 5LX2A 3M51A 1O9EA 2BR9A 2O02A 4FJ3A 4WRQA 3UBWA 4FR3A 4F7RA 3E6YA 1A38A 3SMNA 4DATA 5J31A 4DHMA 2WH0A 4DHNA 2NPMA 3LW1A 4FL5A 4DHOA 5D3EA 3SMMA 5D3FA 4DHRA 3SP5A 3P1PA 2V7DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IHL A;  4DHP A;  5LVZ A;  4Y5I A;  3O8I A;  2C1J A;  4N84 A;  3SPR A;  3SMO A;  1YZ5 A;  1IB1 A;  2C63 A;  3P1Q A;  4JDD A;  3SMK A;  3UAL A;  1O9C A;  2B05 A;  1YWT A;  4O46 A;  3EFZ A;  5LU1 A;  1QJB A;  2C23 A;  4DHS A;  2C1N A;  3IQU A;  4HKC A;  1O9F A;  2O8P A;  3U9X A;  3RDH A;  3P1O A;  3IQJ A;  3T0M A;  4N7G A;  4E2E A;  5LHO A;  3P1R A;  3UX0 A;  4DHQ A;  5EWZ A;  3AXY C;  3IQV A;  4IEA A;  3MHR A;  4QLI A;  1A4O A;  4N7Y A;  4DX0 A;  1A37 A;  4ZDR A;  4DHT A;  1O9D A;  4GNT A;  3NKX A;  3P1N A;  4DAU A;  5D2D A;  2C74 A;  3CU8 A;  5IQP A;  3P1S A;  3SML A;  4DNK A;  5EXA A;  4ZQ0 A;  4JC3 A;  4J6S A;  3T0L A;  4Y32 A;  5F74 A;  2BTP A;  3UZD A;  4BG6 A;  3M50 A;  2O98 A;  5BTV A;  5HF3 A;  4DHU A;  5LU2 A;  4Y3B A;  1QJA A;  2BQ0 A;  5BY9 A;  5LX2 A;  3M51 A;  1O9E A;  2BR9 A;  2O02 A;  4FJ3 A;  4WRQ A;  3UBW A;  4FR3 A;  4F7R A;  3E6Y A;  1A38 A;  3SMN A;  4DAT A;  5J31 A;  4DHM A;  2WH0 A;  4DHN A;  2NPM A;  3LW1 A;  4FL5 A;  4DHO A;  5D3E A;  3SMM A;  5D3F A;  4DHR A;  3SP5 A;  3P1P A;  2V7D A; 
#chains in the Genus database with same CATH topology
 4IHL A;  4DHP A;  5LVZ A;  3ZHE B;  4Y5I A;  4MOA A;  3O8I A;  2C1J A;  1I5P A;  4N84 A;  4QX1 A;  3SPR A;  3SMO A;  1YZ5 A;  1IB1 A;  2C63 A;  3P1Q A;  4JDD A;  3SMK A;  3UAL A;  2C9K A;  1O9C A;  2B05 A;  1YWT A;  1JI6 A;  4O46 A;  3EFZ A;  5LU1 A;  1QJB A;  3EB7 A;  2C23 A;  4DHS A;  2C1N A;  3IQU A;  4HKC A;  1O9F A;  2O8P A;  1W99 A;  3X0U A;  3U9X A;  3RDH A;  3P1O A;  3IQJ A;  3T0M A;  4N7G A;  4E2E A;  5LHO A;  3P1R A;  3UX0 A;  4DHQ A;  5EWZ A;  3AXY C;  3IQV A;  4IEA A;  3I4R A;  3MHR A;  4QLI A;  1A4O A;  4N7Y A;  4DX0 A;  1A37 A;  4ZDR A;  4DHT A;  1O9D A;  4GNT A;  3NKX A;  3P1N A;  4DAU A;  5D2D A;  2C74 A;  3CU8 A;  4D8M A;  5IQP A;  3P1S A;  4W8J A;  3SML A;  5EXA A;  4DNK A;  4ZQ0 A;  4JC3 A;  4ARY A;  4J6S A;  3T0L A;  1CIY A;  4Y32 A;  5F74 A;  2BTP A;  3CQG A;  3UZD A;  4BG6 A;  4QX3 A;  3M50 A;  2O98 A;  5BTV A;  5HF3 A;  4DHU A;  5LU2 A;  4Y3B A;  1QJA A;  2BQ0 A;  5BY9 A;  5LX2 A;  3M51 A;  1O9E A;  2BR9 A;  4QX0 A;  1S2X A;  2O02 A;  4FJ3 A;  4WRQ A;  3UBW A;  4FR3 A;  4F7R A;  3E6Y A;  1A38 A;  3SMN A;  4DAT A;  4QX2 A;  5J31 A;  4DHM A;  1URJ A;  2WH0 A;  4DHN A;  2NPM A;  1DLC A;  3LW1 A;  4FL5 A;  4DHO A;  5D3E A;  3SMM A;  5D3F A;  4DHR A;  3SP5 A;  3P1P A;  2V7D A;  4ARX A;  3CQC A; 
#chains in the Genus database with same CATH homology
 4IHL A;  4DHP A;  5LVZ A;  4Y5I A;  3O8I A;  2C1J A;  4N84 A;  3SPR A;  3SMO A;  1YZ5 A;  1IB1 A;  2C63 A;  3P1Q A;  4JDD A;  3SMK A;  3UAL A;  1O9C A;  2B05 A;  1YWT A;  4O46 A;  3EFZ A;  5LU1 A;  1QJB A;  2C23 A;  4DHS A;  2C1N A;  3IQU A;  4HKC A;  1O9F A;  2O8P A;  3U9X A;  3RDH A;  3P1O A;  3IQJ A;  3T0M A;  4N7G A;  4E2E A;  5LHO A;  3P1R A;  3UX0 A;  4DHQ A;  5EWZ A;  3AXY C;  3IQV A;  4IEA A;  3MHR A;  4QLI A;  1A4O A;  4N7Y A;  4DX0 A;  1A37 A;  4ZDR A;  4DHT A;  1O9D A;  4GNT A;  3NKX A;  3P1N A;  4DAU A;  5D2D A;  2C74 A;  3CU8 A;  5IQP A;  3P1S A;  3SML A;  4DNK A;  5EXA A;  4ZQ0 A;  4JC3 A;  4J6S A;  3T0L A;  4Y32 A;  5F74 A;  2BTP A;  3UZD A;  4BG6 A;  3M50 A;  2O98 A;  5BTV A;  5HF3 A;  4DHU A;  5LU2 A;  4Y3B A;  1QJA A;  2BQ0 A;  5BY9 A;  5LX2 A;  3M51 A;  1O9E A;  2BR9 A;  2O02 A;  4FJ3 A;  4WRQ A;  3UBW A;  4FR3 A;  4F7R A;  3E6Y A;  1A38 A;  3SMN A;  4DAT A;  5J31 A;  4DHM A;  2WH0 A;  4DHN A;  2NPM A;  3LW1 A;  4FL5 A;  4DHO A;  5D3E A;  3SMM A;  5D3F A;  4DHR A;  3SP5 A;  3P1P A;  2V7D A; 
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