3UAL | Genus

Total Genus 110

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	110
sequence length	230
structure length	230
Chain Sequence	DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein/protein binding
source organism	Homo sapiens
publication title	Structural insights of the MLF1/14-3-3 interaction. pubmed doi rcsb
molecule keywords	14-3-3 protein epsilon
total genus	110
structure length	230
sequence length	230
ec nomenclature
pdb deposition date	2011-10-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00244	14-3-3	14-3-3 protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.190.20	Mainly Alpha	Up-down Bundle	Delta-Endotoxin; domain 1	14-3-3 domain	3ualA00

3LW1A 5HF3A 4DNKA 4QLIA 1O9EA 3M51A 5J31A 4BG6A 2C63A 4DHUA 3P1PA 2C23A 1QJBA 2BTPA 5D3EA 1O9FA 5LVZA 1A37A 5LX2A 3P1SA 2WH0A 3T0LA 4N84A 3P1NA 4DHSA 4DAUA 4GNTA 3MHRA 4DHQA 4DX0A 4N7GA 3P1OA 5F74A 1O9DA 4FJ3A 3U9XA 2BR9A 5EXAA 3E6YA 4Y32A 5EWZA 4O46A 2O98A 4JC3A 5IQPA 2V7DA 4ZQ0A 4Y5IA 2BQ0A 3T0MA 4N7YA 4F7RA 2NPMA 4Y3BA 5LU1A 2O8PA 4DHPA 3EFZA 1IB1A 1YWTA 4JDDA 4WRQA 1A38A 5LHOA 3SMOA 5BY9A 4DHRA 2O02A 3M50A 3IQJA 4DHNA 4IEAA 4DHOA 2C74A 5D3FA 4ZDRA 3RDHA 4E2EA 2C1JA 4J6SA 2B05A 3NKXA 5LU2A 3CU8A 3AXYC 2C1NA 1QJAA 5D2DA 3P1QA 3O8IA 3SMNA 3SMKA 1O9CA 1A4OA 3UX0A 3UZDA 3SMLA 4DHMA 3SPRA 3SP5A 3SMMA 3IQUA 4FL5A 4FR3A 1YZ5A 4HKCA 3IQVA 4DHTA 3P1RA 3UALA 4DATA 4IHLA 5BTVA 3UBWA
chains in the Genus database with same CATH superfamily

3LW1A 5HF3A 4DNKA 4QLIA 1O9EA 3M51A 5J31A 4BG6A 2C63A 1W99A 4DHUA 4QX0A 3P1PA 4QX1A 2C23A 4MOAA 1QJBA 2BTPA 5D3EA 1O9FA 5LVZA 1A37A 5LX2A 3P1SA 2C9KA 3ZHEB 2WH0A 3T0LA 4QX2A 4N84A 3P1NA 4D8MA 4DHSA 1S2XA 4DAUA 4GNTA 3MHRA 4DHQA 4DX0A 4N7GA 3P1OA 5F74A 1O9DA 1I5PA 4FJ3A 3U9XA 2BR9A 5EXAA 3E6YA 4Y32A 5EWZA 4O46A 2O98A 4JC3A 5IQPA 2V7DA 4ZQ0A 4Y5IA 2BQ0A 3T0MA 1CIYA 4N7YA 4F7RA 2NPMA 4W8JA 3CQGA 1DLCA 4Y3BA 5LU1A 2O8PA 4DHPA 3EFZA 1IB1A 1YWTA 3EB7A 4JDDA 4WRQA 1A38A 5LHOA 3SMOA 5BY9A 4DHRA 2O02A 4ARYA 3M50A 3IQJA 4DHNA 4IEAA 4DHOA 2C74A 3I4RA 5D3FA 4ZDRA 3RDHA 4E2EA 2C1JA 4J6SA 2B05A 3NKXA 5LU2A 3CU8A 1URJA 3AXYC 2C1NA 1QJAA 5D2DA 3P1QA 3O8IA 4ARXA 3SMNA 3SMKA 1O9CA 1A4OA 3UX0A 3UZDA 3SMLA 4DHMA 3SPRA 3SP5A 3SMMA 3IQUA 4FL5A 4FR3A 1YZ5A 3CQCA 3X0UA 4HKCA 1JI6A 3IQVA 4DHTA 3P1RA 3UALA 4DATA 4IHLA 4QX3A 5BTVA 3UBWA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3LW1 A;  5HF3 A;  4DNK A;  4QLI A;  1O9E A;  3M51 A;  5J31 A;  4BG6 A;  2C63 A;  4DHU A;  3P1P A;  2C23 A;  1QJB A;  2BTP A;  5D3E A;  1O9F A;  5LVZ A;  1A37 A;  5LX2 A;  3P1S A;  2WH0 A;  3T0L A;  4N84 A;  3P1N A;  4DHS A;  4DAU A;  4GNT A;  3MHR A;  4DHQ A;  4DX0 A;  4N7G A;  3P1O A;  5F74 A;  1O9D A;  4FJ3 A;  3U9X A;  2BR9 A;  5EXA A;  3E6Y A;  4Y32 A;  5EWZ A;  4O46 A;  2O98 A;  4JC3 A;  5IQP A;  2V7D A;  4ZQ0 A;  4Y5I A;  2BQ0 A;  3T0M A;  4N7Y A;  4F7R A;  2NPM A;  4Y3B A;  5LU1 A;  2O8P A;  4DHP A;  3EFZ A;  1IB1 A;  1YWT A;  4JDD A;  4WRQ A;  1A38 A;  5LHO A;  3SMO A;  5BY9 A;  4DHR A;  2O02 A;  3M50 A;  3IQJ A;  4DHN A;  4IEA A;  4DHO A;  2C74 A;  5D3F A;  4ZDR A;  3RDH A;  4E2E A;  2C1J A;  4J6S A;  2B05 A;  3NKX A;  5LU2 A;  3CU8 A;  3AXY C;  2C1N A;  1QJA A;  5D2D A;  3P1Q A;  3O8I A;  3SMN A;  3SMK A;  1O9C A;  1A4O A;  3UX0 A;  3UZD A;  3SML A;  4DHM A;  3SPR A;  3SP5 A;  3SMM A;  3IQU A;  4FL5 A;  4FR3 A;  1YZ5 A;  4HKC A;  3IQV A;  4DHT A;  3P1R A;  3UAL A;  4DAT A;  4IHL A;  5BTV A;  3UBW A; 
#chains in the Genus database with same CATH topology
 3LW1 A;  5HF3 A;  4DNK A;  4QLI A;  1O9E A;  3M51 A;  5J31 A;  4BG6 A;  2C63 A;  1W99 A;  4DHU A;  4QX0 A;  3P1P A;  4QX1 A;  2C23 A;  4MOA A;  1QJB A;  2BTP A;  5D3E A;  1O9F A;  5LVZ A;  1A37 A;  5LX2 A;  3P1S A;  2C9K A;  3ZHE B;  2WH0 A;  3T0L A;  4QX2 A;  4N84 A;  3P1N A;  4D8M A;  4DHS A;  1S2X A;  4DAU A;  4GNT A;  3MHR A;  4DHQ A;  4DX0 A;  4N7G A;  3P1O A;  5F74 A;  1O9D A;  1I5P A;  4FJ3 A;  3U9X A;  2BR9 A;  5EXA A;  3E6Y A;  4Y32 A;  5EWZ A;  4O46 A;  2O98 A;  4JC3 A;  5IQP A;  2V7D A;  4ZQ0 A;  4Y5I A;  2BQ0 A;  3T0M A;  1CIY A;  4N7Y A;  4F7R A;  2NPM A;  4W8J A;  3CQG A;  1DLC A;  4Y3B A;  5LU1 A;  2O8P A;  4DHP A;  3EFZ A;  1IB1 A;  1YWT A;  3EB7 A;  4JDD A;  4WRQ A;  1A38 A;  5LHO A;  3SMO A;  5BY9 A;  4DHR A;  2O02 A;  4ARY A;  3M50 A;  3IQJ A;  4DHN A;  4IEA A;  4DHO A;  2C74 A;  3I4R A;  5D3F A;  4ZDR A;  3RDH A;  4E2E A;  2C1J A;  4J6S A;  2B05 A;  3NKX A;  5LU2 A;  3CU8 A;  1URJ A;  3AXY C;  2C1N A;  1QJA A;  5D2D A;  3P1Q A;  3O8I A;  4ARX A;  3SMN A;  3SMK A;  1O9C A;  1A4O A;  3UX0 A;  3UZD A;  3SML A;  4DHM A;  3SPR A;  3SP5 A;  3SMM A;  3IQU A;  4FL5 A;  4FR3 A;  1YZ5 A;  3CQC A;  3X0U A;  4HKC A;  1JI6 A;  3IQV A;  4DHT A;  3P1R A;  3UAL A;  4DAT A;  4IHL A;  4QX3 A;  5BTV A;  3UBW A; 
#chains in the Genus database with same CATH homology
 3LW1 A;  5HF3 A;  4DNK A;  4QLI A;  1O9E A;  3M51 A;  5J31 A;  4BG6 A;  2C63 A;  4DHU A;  3P1P A;  2C23 A;  1QJB A;  2BTP A;  5D3E A;  1O9F A;  5LVZ A;  1A37 A;  5LX2 A;  3P1S A;  2WH0 A;  3T0L A;  4N84 A;  3P1N A;  4DHS A;  4DAU A;  4GNT A;  3MHR A;  4DHQ A;  4DX0 A;  4N7G A;  3P1O A;  5F74 A;  1O9D A;  4FJ3 A;  3U9X A;  2BR9 A;  5EXA A;  3E6Y A;  4Y32 A;  5EWZ A;  4O46 A;  2O98 A;  4JC3 A;  5IQP A;  2V7D A;  4ZQ0 A;  4Y5I A;  2BQ0 A;  3T0M A;  4N7Y A;  4F7R A;  2NPM A;  4Y3B A;  5LU1 A;  2O8P A;  4DHP A;  3EFZ A;  1IB1 A;  1YWT A;  4JDD A;  4WRQ A;  1A38 A;  5LHO A;  3SMO A;  5BY9 A;  4DHR A;  2O02 A;  3M50 A;  3IQJ A;  4DHN A;  4IEA A;  4DHO A;  2C74 A;  5D3F A;  4ZDR A;  3RDH A;  4E2E A;  2C1J A;  4J6S A;  2B05 A;  3NKX A;  5LU2 A;  3CU8 A;  3AXY C;  2C1N A;  1QJA A;  5D2D A;  3P1Q A;  3O8I A;  3SMN A;  3SMK A;  1O9C A;  1A4O A;  3UX0 A;  3UZD A;  3SML A;  4DHM A;  3SPR A;  3SP5 A;  3SMM A;  3IQU A;  4FL5 A;  4FR3 A;  1YZ5 A;  4HKC A;  3IQV A;  4DHT A;  3P1R A;  3UAL A;  4DAT A;  4IHL A;  5BTV A;  3UBW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3UALA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations