3CD6 | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	154
structure length	154
Chain Sequence	MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	47
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2008-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.15.30	Mainly Alpha	Orthogonal Bundle	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3-methyladenine DNA Glycosylase II; Chain A, domain 3	3cd6W02
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	3cd6W01

4WFAW 1VQ6W 3CCQW 3CD6W 1YJWW 3CMEW 2OTJW 3CCUW 1VQ5W 1K8AX 3CF5W 3I55W 1S72W 1VQ8W 1VQNW 3J7ZZ 2ZJRW 5GAEa 3CXCV 1K9MX 2ZJQW 1VQKW 1NJIX 1KC8X 5JVGW 3CCRW 3G6EW 3PIOW 3CPWV 1VQLW 5DM6W 1KQSV 3CC7W 1VQOW 1Q86X 4IOCW 1YJNW 5GAHa 3CC2W 1BXYA 3CCLW 1QVGV 1KD1X 5HL7W 1N8RX 1VQ4W 1M90X 1VQMW 1Q82X 1VQ9W 3CC4W 1QVFV 1Q7YX 3PIPW 4WF9W 2QA4W 3CMAW 5JVHW 1W2BV 4U67W 4WFBW 4IO9W 2OTLW 1JJ2V 2ZJPW 3G4SW 1Q81X 1YI2W 1M1KX 1VQPW 1YJ9W 4WFNW 3CCSW 4WCEW 1YIJW 3DLLW 1YITW 3CCMW 2QEXW 1K73X 1YHQW 4IOAW 3G71W 4UY8Z 5GADa 5GAGa 3CCJW 3CCEW 3CCVW 1VQ7W 3OW2V 3I56W 5DM7W
chains in the Genus database with same CATH superfamily

4BL3A 3W7WA 1MWRA 4WFAW 1VQ6W 3CCQW 3CD6W 1YJWW 3CMEW 3O1FB 2OTJW 3CCUW 1VQ5W 1MWUA 3W7SA 1K8AX 3CF5W 4C1NA 3I55W 4CJNA 1S72W 1VQ8W 1VQNW 3J7ZZ 4DKIA 2WA9A 2ZJRW 1RQUA 5GAEa 3D3IA 3CXCV 5CA3A 1K9MX 2W9RA 1VQKW 1NJIX 1KC8X 2ZJQW 5JVGW 3DNJA 3CCRW 3G6EW 3PIOW 3CPWV 3O2OA 4BL2A 1VQLW 5DM6W 1KQSV 3O2HA 3CC7W 1MWSA 3G3PA 1VQOW 1Q86X 5M19A 1RQSA 1DD3A 3O1FA 4IOCW 1YJNW 1CTFA 5GAHa 1LZWA 3GW1A 3CC2W 4YJXA 1BXYA 3CCLW 1QVGV 4YJMA 3W7TA 1MWTA 1KD1X 5HL7W 3ZFZA 3GQ0A 1N8RX 5GW7A 1VQ4W 1M90X 1VQMW 1R6OC 1Q82X 1VQ9W 4YKAA 3CC4W 1QVFV 2WA8A 1Q7YX 3PIPW 1MBUC 1DD4A 4WF9W 2QA4W 1VQQA 3CMAW 5M18A 3W7XA 1W2BV 5JVHW 4U67W 4WFBW 4IO9W 2OTLW 1JJ2V 2ZJPW 3G4SW 1Q81X 5M1AA 1YI2W 3O2BA 1M1KX 1RQVA 1VQPW 1YJ9W 4WFNW 3CCSW 3ZG0A 4WCEW 1YIJW 3DLLW 1YITW 3CCMW 2QEXW 1K73X 1YHQW 1R6QC 4IOAW 1MG9A 1MBXC 3G71W 3G1BA 3ZG5A 4UY8Z 5GADa 1MBVB 5GAGa 3CCJW 3CCEW 3CCVW 4CPKA 3W7UA 1VQ7W 3G19A 3OW2V 3I56W 5DM7W 3GQ1A
chains in the Genus database with same CATH topology

4WFAW 1VQ6W 3CCQW 3CD6W 1YJWW 3CMEW 2OTJW 3CCUW 1VQ5W 1K8AX 3CF5W 4C1NA 3I55W 1S72W 1VQ8W 1VQNW 3J7ZZ 2ZJRW 5GAEa 3CXCV 1K9MX 2ZJQW 1VQKW 1NJIX 1KC8X 5JVGW 3CCRW 3G6EW 3PIOW 3CPWV 1VQLW 5DM6W 1KQSV 3CC7W 1VQOW 1Q86X 4IOCW 1YJNW 5GAHa 3CC2W 1BXYA 3CCLW 1QVGV 1KD1X 5HL7W 1N8RX 1VQ4W 1M90X 1VQMW 1Q82X 1VQ9W 3CC4W 1QVFV 1Q7YX 3PIPW 4WF9W 2QA4W 3CMAW 5JVHW 1W2BV 4U67W 4WFBW 4IO9W 2OTLW 1JJ2V 2ZJPW 3G4SW 1Q81X 1YI2W 1M1KX 1VQPW 1YJ9W 4WFNW 3CCSW 4WCEW 1YIJW 3DLLW 1YITW 3CCMW 2QEXW 1K73X 1YHQW 4IOAW 3G71W 4UY8Z 5GADa 5GAGa 3CCJW 3CCEW 3CCVW 1VQ7W 3OW2V 3I56W 5DM7W
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4WFA W;  1VQ6 W;  3CCQ W;  3CD6 W;  1YJW W;  3CME W;  2OTJ W;  3CCU W;  1VQ5 W;  1K8A X;  3CF5 W;  3I55 W;  1S72 W;  1VQ8 W;  1VQN W;  3J7Z Z;  2ZJR W;  5GAE a;  3CXC V;  1K9M X;  2ZJQ W;  1VQK W;  1NJI X;  1KC8 X;  5JVG W;  3CCR W;  3G6E W;  3PIO W;  3CPW V;  1VQL W;  5DM6 W;  1KQS V;  3CC7 W;  1VQO W;  1Q86 X;  4IOC W;  1YJN W;  5GAH a;  3CC2 W;  1BXY A;  3CCL W;  1QVG V;  1KD1 X;  5HL7 W;  1N8R X;  1VQ4 W;  1M90 X;  1VQM W;  1Q82 X;  1VQ9 W;  3CC4 W;  1QVF V;  1Q7Y X;  3PIP W;  4WF9 W;  2QA4 W;  3CMA W;  5JVH W;  1W2B V;  4U67 W;  4WFB W;  4IO9 W;  2OTL W;  1JJ2 V;  2ZJP W;  3G4S W;  1Q81 X;  1YI2 W;  1M1K X;  1VQP W;  1YJ9 W;  4WFN W;  3CCS W;  4WCE W;  1YIJ W;  3DLL W;  1YIT W;  3CCM W;  2QEX W;  1K73 X;  1YHQ W;  4IOA W;  3G71 W;  4UY8 Z;  5GAD a;  5GAG a;  3CCJ W;  3CCE W;  3CCV W;  1VQ7 W;  3OW2 V;  3I56 W;  5DM7 W; 
#chains in the Genus database with same CATH topology
 4BL3 A;  3W7W A;  1MWR A;  4WFA W;  1VQ6 W;  3CCQ W;  3CD6 W;  1YJW W;  3CME W;  3O1F B;  2OTJ W;  3CCU W;  1VQ5 W;  1MWU A;  3W7S A;  1K8A X;  3CF5 W;  4C1N A;  3I55 W;  4CJN A;  1S72 W;  1VQ8 W;  1VQN W;  3J7Z Z;  4DKI A;  2WA9 A;  2ZJR W;  1RQU A;  5GAE a;  3D3I A;  3CXC V;  5CA3 A;  1K9M X;  2W9R A;  1VQK W;  1NJI X;  1KC8 X;  2ZJQ W;  5JVG W;  3DNJ A;  3CCR W;  3G6E W;  3PIO W;  3CPW V;  3O2O A;  4BL2 A;  1VQL W;  5DM6 W;  1KQS V;  3O2H A;  3CC7 W;  1MWS A;  3G3P A;  1VQO W;  1Q86 X;  5M19 A;  1RQS A;  1DD3 A;  3O1F A;  4IOC W;  1YJN W;  1CTF A;  5GAH a;  1LZW A;  3GW1 A;  3CC2 W;  4YJX A;  1BXY A;  3CCL W;  1QVG V;  4YJM A;  3W7T A;  1MWT A;  1KD1 X;  5HL7 W;  3ZFZ A;  3GQ0 A;  1N8R X;  5GW7 A;  1VQ4 W;  1M90 X;  1VQM W;  1R6O C;  1Q82 X;  1VQ9 W;  4YKA A;  3CC4 W;  1QVF V;  2WA8 A;  1Q7Y X;  3PIP W;  1MBU C;  1DD4 A;  4WF9 W;  2QA4 W;  1VQQ A;  3CMA W;  5M18 A;  3W7X A;  1W2B V;  5JVH W;  4U67 W;  4WFB W;  4IO9 W;  2OTL W;  1JJ2 V;  2ZJP W;  3G4S W;  1Q81 X;  5M1A A;  1YI2 W;  3O2B A;  1M1K X;  1RQV A;  1VQP W;  1YJ9 W;  4WFN W;  3CCS W;  3ZG0 A;  4WCE W;  1YIJ W;  3DLL W;  1YIT W;  3CCM W;  2QEX W;  1K73 X;  1YHQ W;  1R6Q C;  4IOA W;  1MG9 A;  1MBX C;  3G71 W;  3G1B A;  3ZG5 A;  4UY8 Z;  5GAD a;  1MBV B;  5GAG a;  3CCJ W;  3CCE W;  3CCV W;  4CPK A;  3W7U A;  1VQ7 W;  3G19 A;  3OW2 V;  3I56 W;  5DM7 W;  3GQ1 A; 
#chains in the Genus database with same CATH homology
 4WFA W;  1VQ6 W;  3CCQ W;  3CD6 W;  1YJW W;  3CME W;  2OTJ W;  3CCU W;  1VQ5 W;  1K8A X;  3CF5 W;  4C1N A;  3I55 W;  1S72 W;  1VQ8 W;  1VQN W;  3J7Z Z;  2ZJR W;  5GAE a;  3CXC V;  1K9M X;  2ZJQ W;  1VQK W;  1NJI X;  1KC8 X;  5JVG W;  3CCR W;  3G6E W;  3PIO W;  3CPW V;  1VQL W;  5DM6 W;  1KQS V;  3CC7 W;  1VQO W;  1Q86 X;  4IOC W;  1YJN W;  5GAH a;  3CC2 W;  1BXY A;  3CCL W;  1QVG V;  1KD1 X;  5HL7 W;  1N8R X;  1VQ4 W;  1M90 X;  1VQM W;  1Q82 X;  1VQ9 W;  3CC4 W;  1QVF V;  1Q7Y X;  3PIP W;  4WF9 W;  2QA4 W;  3CMA W;  5JVH W;  1W2B V;  4U67 W;  4WFB W;  4IO9 W;  2OTL W;  1JJ2 V;  2ZJP W;  3G4S W;  1Q81 X;  1YI2 W;  1M1K X;  1VQP W;  1YJ9 W;  4WFN W;  3CCS W;  4WCE W;  1YIJ W;  3DLL W;  1YIT W;  3CCM W;  2QEX W;  1K73 X;  1YHQ W;  4IOA W;  3G71 W;  4UY8 Z;  5GAD a;  5GAG a;  3CCJ W;  3CCE W;  3CCV W;  1VQ7 W;  3OW2 V;  3I56 W;  5DM7 W;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CD6W

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations