4DNKA

Crystal structure of a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (ywhab) from homo sapiens at 2.20 a resolution.
Total Genus 94

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
232
structure length
232
Chain Sequence
TMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-18)TIV1 (20-23)3H1 (23-26)EMPTYAH2 (29-34)TIV2 (106-109)AH3 (40-69)AH5 (114-134)TI1 (107-110)AH6 (139-161)TI2 (108-111)TI3 (163-166)3H2 (205-207)3H3 (210-212)AH4 (75-106)AH7 (167-184)AH8 (187-203)AH9 (213-232)TIV3 (136-139)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title Crystal structure of a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (YWHAQ) from Homo sapiens at 2.20 A resolution
rcsb
molecule keywords 14-3-3 protein beta/alpha
total genus 94
structure length 232
sequence length 232
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00244 14-3-3 14-3-3 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.190.20 Mainly Alpha Up-down Bundle Delta-Endotoxin; domain 1 14-3-3 domain 4dnkA00
3T0LA 2C23A 1O9EA 4FL5A 5LU2A 4Y5IA 3T0MA 2C1NA 3IQVA 5IQPA 2C1JA 1YZ5A 3NKXA 5LX2A 5LU1A 1IB1A 3SMLA 4Y3BA 4DATA 4DHTA 3LW1A 3P1OA 3SPRA 3AXYC 3E6YA 4WRQA 4F7RA 3UALA 4N7YA 2NPMA 4DHPA 2WH0A 2C63A 4DHQA 4JDDA 2B05A 1A37A 5LHOA 4QLIA 4JC3A 1O9DA 4HKCA 1A38A 1O9CA 3SMOA 5J31A 3UZDA 3P1SA 4J6SA 2BTPA 4Y32A 3IQJA 4BG6A 1A4OA 3P1QA 4DHSA 4ZDRA 2O02A 5D3EA 2BQ0A 3M50A 5BTVA 3SMNA 4GNTA 3SMKA 3CU8A 5EWZA 5D2DA 3U9XA 4DHRA 3O8IA 5HF3A 3M51A 4N84A 4N7GA 3SMMA 3MHRA 5LVZA 1O9FA 1QJAA 4O46A 4FR3A 3UBWA 4E2EA 4DAUA 4IEAA 2O98A 4ZQ0A 4DNKA 4DHUA 3IQUA 4DX0A 4DHOA 3SP5A 5BY9A 3UX0A 3EFZA 2C74A 3RDHA 2O8PA 4IHLA 5F74A 3P1PA 2V7DA 3P1NA 4DHNA 2BR9A 5EXAA 1QJBA 4FJ3A 5D3FA 3P1RA 4DHMA 1YWTA
chains in the Genus database with same CATH superfamily
3T0LA 2C23A 4MOAA 1O9EA 4FL5A 5LU2A 4Y5IA 3T0MA 2C1NA 3IQVA 5IQPA 2C1JA 1YZ5A 3NKXA 5LX2A 5LU1A 1IB1A 3SMLA 4Y3BA 4DATA 4DHTA 3LW1A 3P1OA 3SPRA 3AXYC 3E6YA 4WRQA 4F7RA 3UALA 4N7YA 2C9KA 2NPMA 4DHPA 2WH0A 2C63A 4DHQA 4JDDA 2B05A 1A37A 5LHOA 4QLIA 4QX0A 4JC3A 1O9DA 4HKCA 1A38A 1O9CA 3CQCA 3SMOA 4ARYA 5J31A 3UZDA 3P1SA 4J6SA 2BTPA 4Y32A 3IQJA 4BG6A 3I4RA 1A4OA 3P1QA 4DHSA 4ZDRA 2O02A 4ARXA 3CQGA 5D3EA 2BQ0A 3M50A 1CIYA 1W99A 5BTVA 4QX2A 3SMNA 4GNTA 3SMKA 3CU8A 5EWZA 5D2DA 3U9XA 4DHRA 3X0UA 3O8IA 5HF3A 3M51A 4N84A 1I5PA 4N7GA 3SMMA 3MHRA 5LVZA 1O9FA 1QJAA 4O46A 4FR3A 4QX1A 3UBWA 4E2EA 4DAUA 4IEAA 2O98A 4ZQ0A 1S2XA 4QX3A 4DNKA 3ZHEB 4DHUA 3IQUA 4DX0A 1JI6A 4DHOA 3SP5A 5BY9A 1DLCA 3UX0A 3EFZA 2C74A 3RDHA 2O8PA 4IHLA 5F74A 3P1PA 2V7DA 3P1NA 4DHNA 2BR9A 5EXAA 1QJBA 4FJ3A 5D3FA 4D8MA 1URJA 3P1RA 4W8JA 3EB7A 4DHMA 1YWTA
chains in the Genus database with same CATH topology
3T0LA 2C23A 1O9EA 4FL5A 5LU2A 4Y5IA 3T0MA 2C1NA 3IQVA 5IQPA 2C1JA 1YZ5A 3NKXA 5LX2A 5LU1A 1IB1A 3SMLA 4Y3BA 4DATA 4DHTA 3LW1A 3P1OA 3SPRA 3AXYC 3E6YA 4WRQA 4F7RA 3UALA 4N7YA 2NPMA 4DHPA 2WH0A 2C63A 4DHQA 4JDDA 2B05A 1A37A 5LHOA 4QLIA 4JC3A 1O9DA 4HKCA 1A38A 1O9CA 3SMOA 5J31A 3UZDA 3P1SA 4J6SA 2BTPA 4Y32A 3IQJA 4BG6A 1A4OA 3P1QA 4DHSA 4ZDRA 2O02A 5D3EA 2BQ0A 3M50A 5BTVA 3SMNA 4GNTA 3SMKA 3CU8A 5EWZA 5D2DA 3U9XA 4DHRA 3O8IA 5HF3A 3M51A 4N84A 4N7GA 3SMMA 3MHRA 5LVZA 1O9FA 1QJAA 4O46A 4FR3A 3UBWA 4E2EA 4DAUA 4IEAA 2O98A 4ZQ0A 4DNKA 4DHUA 3IQUA 4DX0A 4DHOA 3SP5A 5BY9A 3UX0A 3EFZA 2C74A 3RDHA 2O8PA 4IHLA 5F74A 3P1PA 2V7DA 3P1NA 4DHNA 2BR9A 5EXAA 1QJBA 4FJ3A 5D3FA 3P1RA 4DHMA 1YWTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T0L A;  2C23 A;  1O9E A;  4FL5 A;  5LU2 A;  4Y5I A;  3T0M A;  2C1N A;  3IQV A;  5IQP A;  2C1J A;  1YZ5 A;  3NKX A;  5LX2 A;  5LU1 A;  1IB1 A;  3SML A;  4Y3B A;  4DAT A;  4DHT A;  3LW1 A;  3P1O A;  3SPR A;  3AXY C;  3E6Y A;  4WRQ A;  4F7R A;  3UAL A;  4N7Y A;  2NPM A;  4DHP A;  2WH0 A;  2C63 A;  4DHQ A;  4JDD A;  2B05 A;  1A37 A;  5LHO A;  4QLI A;  4JC3 A;  1O9D A;  4HKC A;  1A38 A;  1O9C A;  3SMO A;  5J31 A;  3UZD A;  3P1S A;  4J6S A;  2BTP A;  4Y32 A;  3IQJ A;  4BG6 A;  1A4O A;  3P1Q A;  4DHS A;  4ZDR A;  2O02 A;  5D3E A;  2BQ0 A;  3M50 A;  5BTV A;  3SMN A;  4GNT A;  3SMK A;  3CU8 A;  5EWZ A;  5D2D A;  3U9X A;  4DHR A;  3O8I A;  5HF3 A;  3M51 A;  4N84 A;  4N7G A;  3SMM A;  3MHR A;  5LVZ A;  1O9F A;  1QJA A;  4O46 A;  4FR3 A;  3UBW A;  4E2E A;  4DAU A;  4IEA A;  2O98 A;  4ZQ0 A;  4DNK A;  4DHU A;  3IQU A;  4DX0 A;  4DHO A;  3SP5 A;  5BY9 A;  3UX0 A;  3EFZ A;  2C74 A;  3RDH A;  2O8P A;  4IHL A;  5F74 A;  3P1P A;  2V7D A;  3P1N A;  4DHN A;  2BR9 A;  5EXA A;  1QJB A;  4FJ3 A;  5D3F A;  3P1R A;  4DHM A;  1YWT A; 
#chains in the Genus database with same CATH topology
 3T0L A;  2C23 A;  4MOA A;  1O9E A;  4FL5 A;  5LU2 A;  4Y5I A;  3T0M A;  2C1N A;  3IQV A;  5IQP A;  2C1J A;  1YZ5 A;  3NKX A;  5LX2 A;  5LU1 A;  1IB1 A;  3SML A;  4Y3B A;  4DAT A;  4DHT A;  3LW1 A;  3P1O A;  3SPR A;  3AXY C;  3E6Y A;  4WRQ A;  4F7R A;  3UAL A;  4N7Y A;  2C9K A;  2NPM A;  4DHP A;  2WH0 A;  2C63 A;  4DHQ A;  4JDD A;  2B05 A;  1A37 A;  5LHO A;  4QLI A;  4QX0 A;  4JC3 A;  1O9D A;  4HKC A;  1A38 A;  1O9C A;  3CQC A;  3SMO A;  4ARY A;  5J31 A;  3UZD A;  3P1S A;  4J6S A;  2BTP A;  4Y32 A;  3IQJ A;  4BG6 A;  3I4R A;  1A4O A;  3P1Q A;  4DHS A;  4ZDR A;  2O02 A;  4ARX A;  3CQG A;  5D3E A;  2BQ0 A;  3M50 A;  1CIY A;  1W99 A;  5BTV A;  4QX2 A;  3SMN A;  4GNT A;  3SMK A;  3CU8 A;  5EWZ A;  5D2D A;  3U9X A;  4DHR A;  3X0U A;  3O8I A;  5HF3 A;  3M51 A;  4N84 A;  1I5P A;  4N7G A;  3SMM A;  3MHR A;  5LVZ A;  1O9F A;  1QJA A;  4O46 A;  4FR3 A;  4QX1 A;  3UBW A;  4E2E A;  4DAU A;  4IEA A;  2O98 A;  4ZQ0 A;  1S2X A;  4QX3 A;  4DNK A;  3ZHE B;  4DHU A;  3IQU A;  4DX0 A;  1JI6 A;  4DHO A;  3SP5 A;  5BY9 A;  1DLC A;  3UX0 A;  3EFZ A;  2C74 A;  3RDH A;  2O8P A;  4IHL A;  5F74 A;  3P1P A;  2V7D A;  3P1N A;  4DHN A;  2BR9 A;  5EXA A;  1QJB A;  4FJ3 A;  5D3F A;  4D8M A;  1URJ A;  3P1R A;  4W8J A;  3EB7 A;  4DHM A;  1YWT A; 
#chains in the Genus database with same CATH homology
 3T0L A;  2C23 A;  1O9E A;  4FL5 A;  5LU2 A;  4Y5I A;  3T0M A;  2C1N A;  3IQV A;  5IQP A;  2C1J A;  1YZ5 A;  3NKX A;  5LX2 A;  5LU1 A;  1IB1 A;  3SML A;  4Y3B A;  4DAT A;  4DHT A;  3LW1 A;  3P1O A;  3SPR A;  3AXY C;  3E6Y A;  4WRQ A;  4F7R A;  3UAL A;  4N7Y A;  2NPM A;  4DHP A;  2WH0 A;  2C63 A;  4DHQ A;  4JDD A;  2B05 A;  1A37 A;  5LHO A;  4QLI A;  4JC3 A;  1O9D A;  4HKC A;  1A38 A;  1O9C A;  3SMO A;  5J31 A;  3UZD A;  3P1S A;  4J6S A;  2BTP A;  4Y32 A;  3IQJ A;  4BG6 A;  1A4O A;  3P1Q A;  4DHS A;  4ZDR A;  2O02 A;  5D3E A;  2BQ0 A;  3M50 A;  5BTV A;  3SMN A;  4GNT A;  3SMK A;  3CU8 A;  5EWZ A;  5D2D A;  3U9X A;  4DHR A;  3O8I A;  5HF3 A;  3M51 A;  4N84 A;  4N7G A;  3SMM A;  3MHR A;  5LVZ A;  1O9F A;  1QJA A;  4O46 A;  4FR3 A;  3UBW A;  4E2E A;  4DAU A;  4IEA A;  2O98 A;  4ZQ0 A;  4DNK A;  4DHU A;  3IQU A;  4DX0 A;  4DHO A;  3SP5 A;  5BY9 A;  3UX0 A;  3EFZ A;  2C74 A;  3RDH A;  2O8P A;  4IHL A;  5F74 A;  3P1P A;  2V7D A;  3P1N A;  4DHN A;  2BR9 A;  5EXA A;  1QJB A;  4FJ3 A;  5D3F A;  3P1R A;  4DHM A;  1YWT A; 
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