4KIVA

Recombinant kringle iv-10/w72r mutant of human apolipoprotein(a)
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
79
structure length
79
Chain Sequence
QCYHGNGQSYRGTFSTTVTGRTCQSWSSMTPHRHQRTPENYPNDGLTMNYCRNPDADTGPWCFTMDPSIRREYCNLTRC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Recombinant kringle IV-10 modules of human apolipoprotein(a): structure, ligand binding modes, and biological relevance.
pubmed doi rcsb
molecule tags Lysine binding site
source organism Homo sapiens
molecule keywords APOLIPOPROTEIN
total genus 15
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 1998-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 4kivA00
1I71A 1NK1A 5CS3A 5COEA 4BVCA 3MKPA 2SPTA 5CS1A 4HZHA 3U73A 1CEBA 1GMNA 1PMKA 1KIVA 4BVVA 2KJ4A 3K65A 2PF1A 1B2IA 3NXPA 4BVWA 1GMOA 2DOHX 5CP9A 4O03A 5CS5A 4NZQA 4BV7A 2PF2A 5CT2A 1PK2A 2QJ4A 5CS9A 3BT2A 2K51A 1KDUA 2I9BA 1KRNA 3KIVA 2FD6A 3E6PL 1PMLA 5CT1A 3HN4A 1HPKA 1GP9A 4DURA 2PK4A 1CEAA 1PK4A 2K4RA 1HPJA 2DOIA 2I9AA 1PKRA 5CT3A 1URKA 1JFNA 2L0SA 4CIKA 1NL1A 1A0HA 1NL2A 3SP8A 1I5KA 1TPKA 4D3CA 2HPPP 5HPGA 4BV5A 1BHTA 3LAQA 3BT1A 4BVDA 2FEBA 2KNFA 4A5TS 2QJ2A 5CSQA 4IUAA 1KI0A 2HPQP 4KIVA
chains in the Genus database with same CATH superfamily
1I71A 1NK1A 5CS3A 5COEA 4BVCA 3MKPA 2SPTA 5CS1A 4HZHA 3U73A 1CEBA 1GMNA 1PMKA 1KIVA 4BVVA 2KJ4A 3K65A 2PF1A 1B2IA 3NXPA 4BVWA 1GMOA 2DOHX 5CP9A 4O03A 5CS5A 4NZQA 4BV7A 2PF2A 5CT2A 1PK2A 2QJ4A 5CS9A 3BT2A 2K51A 1KDUA 2I9BA 1KRNA 3KIVA 2FD6A 3E6PL 1PMLA 5CT1A 3HN4A 1HPKA 1GP9A 4DURA 2PK4A 1CEAA 1PK4A 2K4RA 1HPJA 2DOIA 2I9AA 1PKRA 5CT3A 1URKA 1JFNA 2L0SA 4CIKA 1NL1A 1A0HA 1NL2A 3SP8A 1I5KA 1TPKA 4D3CA 2HPPP 5HPGA 4BV5A 1BHTA 3LAQA 3BT1A 4BVDA 2FEBA 2KNFA 4A5TS 2QJ2A 5CSQA 4IUAA 1KI0A 2HPQP 4KIVA
chains in the Genus database with same CATH topology
1I71A 1NK1A 5CS3A 5COEA 4BVCA 3MKPA 2SPTA 5CS1A 4HZHA 3U73A 1CEBA 1GMNA 1PMKA 1KIVA 4BVVA 2KJ4A 3K65A 2PF1A 1B2IA 3NXPA 4BVWA 1GMOA 2DOHX 5CP9A 4O03A 5CS5A 4NZQA 4BV7A 2PF2A 5CT2A 1PK2A 2QJ4A 5CS9A 3BT2A 2K51A 1KDUA 2I9BA 1KRNA 3KIVA 2FD6A 3E6PL 1PMLA 5CT1A 3HN4A 1HPKA 1GP9A 4DURA 2PK4A 1CEAA 1PK4A 2K4RA 1HPJA 2DOIA 2I9AA 1PKRA 5CT3A 1URKA 1JFNA 2L0SA 4CIKA 1NL1A 1A0HA 1NL2A 3SP8A 1I5KA 1TPKA 4D3CA 2HPPP 5HPGA 4BV5A 1BHTA 3LAQA 3BT1A 4BVDA 2FEBA 2KNFA 4A5TS 2QJ2A 5CSQA 4IUAA 1KI0A 2HPQP 4KIVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I71 A;  1NK1 A;  5CS3 A;  5COE A;  4BVC A;  3MKP A;  2SPT A;  5CS1 A;  4HZH A;  3U73 A;  1CEB A;  1GMN A;  1PMK A;  1KIV A;  4BVV A;  2KJ4 A;  3K65 A;  2PF1 A;  1B2I A;  3NXP A;  4BVW A;  1GMO A;  2DOH X;  5CP9 A;  4O03 A;  5CS5 A;  4NZQ A;  4BV7 A;  2PF2 A;  5CT2 A;  1PK2 A;  2QJ4 A;  5CS9 A;  3BT2 A;  2K51 A;  1KDU A;  2I9B A;  1KRN A;  3KIV A;  2FD6 A;  3E6P L;  1PML A;  5CT1 A;  3HN4 A;  1HPK A;  1GP9 A;  4DUR A;  2PK4 A;  1CEA A;  1PK4 A;  2K4R A;  1HPJ A;  2DOI A;  2I9A A;  1PKR A;  5CT3 A;  1URK A;  1JFN A;  2L0S A;  4CIK A;  1NL1 A;  1A0H A;  1NL2 A;  3SP8 A;  1I5K A;  1TPK A;  4D3C A;  2HPP P;  5HPG A;  4BV5 A;  1BHT A;  3LAQ A;  3BT1 A;  4BVD A;  2FEB A;  2KNF A;  4A5T S;  2QJ2 A;  5CSQ A;  4IUA A;  1KI0 A;  2HPQ P;  4KIV A; 
#chains in the Genus database with same CATH topology
 1I71 A;  1NK1 A;  5CS3 A;  5COE A;  4BVC A;  3MKP A;  2SPT A;  5CS1 A;  4HZH A;  3U73 A;  1CEB A;  1GMN A;  1PMK A;  1KIV A;  4BVV A;  2KJ4 A;  3K65 A;  2PF1 A;  1B2I A;  3NXP A;  4BVW A;  1GMO A;  2DOH X;  5CP9 A;  4O03 A;  5CS5 A;  4NZQ A;  4BV7 A;  2PF2 A;  5CT2 A;  1PK2 A;  2QJ4 A;  5CS9 A;  3BT2 A;  2K51 A;  1KDU A;  2I9B A;  1KRN A;  3KIV A;  2FD6 A;  3E6P L;  1PML A;  5CT1 A;  3HN4 A;  1HPK A;  1GP9 A;  4DUR A;  2PK4 A;  1CEA A;  1PK4 A;  2K4R A;  1HPJ A;  2DOI A;  2I9A A;  1PKR A;  5CT3 A;  1URK A;  1JFN A;  2L0S A;  4CIK A;  1NL1 A;  1A0H A;  1NL2 A;  3SP8 A;  1I5K A;  1TPK A;  4D3C A;  2HPP P;  5HPG A;  4BV5 A;  1BHT A;  3LAQ A;  3BT1 A;  4BVD A;  2FEB A;  2KNF A;  4A5T S;  2QJ2 A;  5CSQ A;  4IUA A;  1KI0 A;  2HPQ P;  4KIV A; 
#chains in the Genus database with same CATH homology
 1I71 A;  1NK1 A;  5CS3 A;  5COE A;  4BVC A;  3MKP A;  2SPT A;  5CS1 A;  4HZH A;  3U73 A;  1CEB A;  1GMN A;  1PMK A;  1KIV A;  4BVV A;  2KJ4 A;  3K65 A;  2PF1 A;  1B2I A;  3NXP A;  4BVW A;  1GMO A;  2DOH X;  5CP9 A;  4O03 A;  5CS5 A;  4NZQ A;  4BV7 A;  2PF2 A;  5CT2 A;  1PK2 A;  2QJ4 A;  5CS9 A;  3BT2 A;  2K51 A;  1KDU A;  2I9B A;  1KRN A;  3KIV A;  2FD6 A;  3E6P L;  1PML A;  5CT1 A;  3HN4 A;  1HPK A;  1GP9 A;  4DUR A;  2PK4 A;  1CEA A;  1PK4 A;  2K4R A;  1HPJ A;  2DOI A;  2I9A A;  1PKR A;  5CT3 A;  1URK A;  1JFN A;  2L0S A;  4CIK A;  1NL1 A;  1A0H A;  1NL2 A;  3SP8 A;  1I5K A;  1TPK A;  4D3C A;  2HPP P;  5HPG A;  4BV5 A;  1BHT A;  3LAQ A;  3BT1 A;  4BVD A;  2FEB A;  2KNF A;  4A5T S;  2QJ2 A;  5CSQ A;  4IUA A;  1KI0 A;  2HPQ P;  4KIV A; 
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