1H3LA

N-terminal fragment of sigr from streptomyces coelicolor
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
75
structure length
75
Chain Sequence
STAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRILTNTFINSYR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (29-55)AH2 (58-75)EMPTYUpdating...
connected with : NaN
molecule tags Transcription
source organism Streptomyces coelicolor a3(2)
publication title Identification and Structure of the Anti-Sigma Factor-Binding Domain of the Disulfide-Stress Regulated Sigma Factor Sigma(R) from Streptomyces Coelicolor
pubmed doi rcsb
molecule keywords RNA POLYMERASE SIGMA FACTOR
total genus 29
structure length 75
sequence length 75
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04542 Sigma70_r2 Sigma-70 region 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 1h3lA00
1MW2A 3AU8A 2WPGA 1Q0QA 4OOFA 4RCVA 5JO0A 3A06A 1ONOA 5DULA 1S46A 1JG9A 4Y6RA 4FLQA 3CZGA 3T0YA 2JCXA 3WQRA 1R0LA 1MW3A 4AICA 2JCYA 1ONNA 4Y67A 2C82A 1G5AA 4Y6SA 3RASA 3AU9A 4Y6PA 1SC5A 2Y1FA 1MW1A 4ZQFA 4AYSA 1ZS2A 5JBIA 4FLOA 3A14A 1RP3A 3WQQA 4ZQGA 3CZLA 2O7GA 2JCVA 4NQWA 5JAZA 2Y1DA 4A03A 1MW0A 3IIEA 1K5HA 5JMPA 4FLRA 3ANMA 3ZHYA 4KP7A 4OOEA 4ZQEA 5JC1A 1R0KA 1H3LA 3ZHZA 3R0IA 2Y1CA 2MAPA 2JD1A 3ZI0A 3CZKA 4ZQHA 4CXFA 4LUPA 1OR7A 3UCQA 2Y1GA 2Y1EA 3ZHXA 3UERA 4ZN6A 1ONPA 3WQSB 2EGHA 2JD0A 2JD2A 1JVSA 1Q0HA 4GAEA 1Q0LA 1MVYA 1T1SA 5JNLA 3CZEA 5JMWA 3AUAA 4FLSA 1T1RA 3UEQA 3ANNA 3ANLA 1JGIA 2MAOA
chains in the Genus database with same CATH superfamily
5HNHA 1MW2A 3AU8A 4K5NA 2WPGA 4ZX5A 4ZX3A 1Q0QA 4X2UA 4ZW6A 4FCAA 5DYFA 4OOFA 2B61A 4RCVA 2HPTA 2ZXGA 4XN1A 5JO0A 3A06A 1ONOA 5DULA 4R7LA 5HLTA 1X3ZA 1S46A 3B2PA 1JG9A 1H19A 2XPZA 3CHRA 3FU3A 4Y6RA 4FLQA 2QVWA 2R70A 3CZGA 4XN4A 3T0YA 2C5ZA 2JCXA 4GAAA 2FFLA 3WQRA 1R0LA 1MW3A 4AICA 4K5PA 4PU2A 4JNDA 4L2LA 2WZGA 2JCYA 1ONNA 3FHEA 4J3BA 4QMEA 4R5TA 4ZX4A 3CHOA 4XMXA 5FWQA 3QJXA 3FH5A 3T8VA 3B7SA 3CHPA 4RVBA 3B2XA 4QHPA 4XN7A 4Y67A 4AR8A 4PW4A 5HNFA 2C82A 2R72A 4XO5A 1G5AA 3PUUA 3FTXA 4Y6SA 3FUHA 3RASA 3FU0A 3U9WA 3AU9A 4K5OA 4QIRA 4Y6PA 4AR1A 2RJIA 1SC5A 4XMZA 3Q43A 4K5MA 2Y1FA 1MW1A 4ZQFA 5DLLA 2JV7A 4AYSA 3FUEA 3FULA 3FUNA 3FTSA 1ZS2A 3B34A 5JBIA 3RC8A 4FLOA 4XO3A 4RSYA 2A7OA 3A14A 1RP3A 2GTQA 4Q4IA 4XMUA 3FUFA 3WQQA 4ZQGA 3CZLA 2O7GA 3B3BA 2JCVA 4NQWA 5JAZA 5AENA 3VVLA 2Y1DA 3FH7A 4ZX6A 4A03A 3FU5A 3KEDA 1MW0A 2PGGA 3IIEA 3Q44A 1K5HA 5JMPA 4ZW3A 4FLRA 3ANMA 4PVBA 4XN5A 3ZHYA 4ARFA 4KP7A 4XMVA 2VJ8A 3RC3A 4OOEA 4QUOA 4ZQEA 5JC1A 1GW6A 1R0KA 1H3LA 3ZHZA 3CHSA 3JSZA 3B7RL 2XQ0A 3R0IA 2Y1CA 2MAPA 2JD1A 3ZI0A 3CZKA 3FH8A 4ZQHA 3FUDA 2XPYA 3EBHA 3B7TA 4CXFA 1OR7A 4LUPA 3FUMA 3UCQA 4AR9A 4BKXA 2Y1GA 2Y1EA 3HW2A 3ZHXA 4DPRA 3FTZA 4R5XA 3UERA 4ZN6A 1ONPA 2PUSA 3WQSB 2EGHA 3EBGA 5EV7A 2WZFA 2JD0A 2JD2A 3B37A 3FTUA 1SQMA 3CHQA 1JVSA 4XN8A 3FUIA 1Q0HA 4XNDA 3JT1A 4GAEA 1Q0LA 3FUKA 3EBIA 3FTWA 1MVYA 2R59A 4XN9A 4ZQTA 4XMWA 1T1SA 4XNBA 3CIAA 3VVMA 5JNLA 2DQ6A 2QJ1A 4MS6A 3FU6A 3FTVA 4R5VA 3CZEA 3FTYA 4XMTA 1HS6A 4ZW7A 3AUAA 2DQMA 4ZW8A 5JMWA 4FLSA 2HPOA 4XN2A 4XO4A 5BPPA 2VLAA 4Q4EA 3B7UX 1X3WA 2PL5A 3FUJA 4K5LA 1T1RA 1SG7A 4QPEA 3UEQA 4XNAA 3ANNA 3CXBA 3ANLA 4ZW5A 4MKTA 1JGIA 2MAOA
chains in the Genus database with same CATH topology
5HNHA 1MW2A 3AU8A 4K5NA 2WPGA 4ZX5A 4ZX3A 1Q0QA 4X2UA 4ZW6A 4FCAA 5DYFA 4OOFA 2B61A 4RCVA 2HPTA 2ZXGA 4XN1A 5JO0A 3A06A 1ONOA 5DULA 4R7LA 5HLTA 1X3ZA 1S46A 3B2PA 1JG9A 1H19A 2XPZA 3CHRA 3FU3A 4Y6RA 4FLQA 2QVWA 2R70A 3CZGA 4XN4A 3T0YA 2C5ZA 2JCXA 4GAAA 2FFLA 3WQRA 1R0LA 1MW3A 4AICA 4K5PA 4PU2A 4JNDA 4L2LA 2WZGA 2JCYA 1ONNA 3FHEA 4J3BA 4QMEA 4R5TA 4ZX4A 3CHOA 4XMXA 5FWQA 3QJXA 3FH5A 3T8VA 3B7SA 3CHPA 4RVBA 3B2XA 4QHPA 4XN7A 4Y67A 4AR8A 4PW4A 5HNFA 2C82A 2R72A 4XO5A 1G5AA 3PUUA 3FTXA 4Y6SA 3FUHA 3RASA 3FU0A 3U9WA 3AU9A 4K5OA 4QIRA 4Y6PA 4AR1A 2RJIA 1SC5A 4XMZA 3Q43A 4K5MA 2Y1FA 1MW1A 4ZQFA 5DLLA 2JV7A 4AYSA 3FUEA 3FULA 3FUNA 3FTSA 1ZS2A 3B34A 5JBIA 3RC8A 4FLOA 4XO3A 4RSYA 2A7OA 3A14A 1RP3A 2GTQA 4Q4IA 4XMUA 3FUFA 3WQQA 4ZQGA 3CZLA 2O7GA 3B3BA 2JCVA 4NQWA 5JAZA 5AENA 3VVLA 2Y1DA 3FH7A 4ZX6A 4A03A 3FU5A 3KEDA 1MW0A 2PGGA 3IIEA 3Q44A 1K5HA 5JMPA 4ZW3A 4FLRA 3ANMA 4PVBA 4XN5A 3ZHYA 4ARFA 4KP7A 4XMVA 2VJ8A 3RC3A 4OOEA 4QUOA 4ZQEA 5JC1A 1GW6A 1R0KA 1H3LA 3ZHZA 3CHSA 3JSZA 3B7RL 2XQ0A 3R0IA 2Y1CA 2MAPA 2JD1A 3ZI0A 3CZKA 3FH8A 4ZQHA 3FUDA 2XPYA 3EBHA 3B7TA 4CXFA 1OR7A 4LUPA 3FUMA 3UCQA 4AR9A 4BKXA 2Y1GA 2Y1EA 3ZHXA 4DPRA 3FTZA 4R5XA 3UERA 4ZN6A 1ONPA 2PUSA 3WQSB 2EGHA 3EBGA 5EV7A 2WZFA 2JD0A 2JD2A 3B37A 3FTUA 1SQMA 3CHQA 1JVSA 4XN8A 3FUIA 1Q0HA 4XNDA 3JT1A 4GAEA 1Q0LA 3FUKA 3EBIA 3FTWA 1MVYA 2R59A 4XN9A 4ZQTA 4XMWA 1T1SA 4XNBA 3CIAA 3VVMA 5JNLA 2DQ6A 2QJ1A 4MS6A 3FU6A 3FTVA 4R5VA 3CZEA 3FTYA 4XMTA 1HS6A 4ZW7A 3AUAA 2DQMA 4ZW8A 5JMWA 4FLSA 2HPOA 4XN2A 4XO4A 5BPPA 2VLAA 4Q4EA 3B7UX 1X3WA 2PL5A 3FUJA 4K5LA 1T1RA 1SG7A 4QPEA 3UEQA 4XNAA 3ANNA 3ANLA 4ZW5A 4MKTA 1JGIA 2MAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MW2 A;  3AU8 A;  2WPG A;  1Q0Q A;  4OOF A;  4RCV A;  5JO0 A;  3A06 A;  1ONO A;  5DUL A;  1S46 A;  1JG9 A;  4Y6R A;  4FLQ A;  3CZG A;  3T0Y A;  2JCX A;  3WQR A;  1R0L A;  1MW3 A;  4AIC A;  2JCY A;  1ONN A;  4Y67 A;  2C82 A;  1G5A A;  4Y6S A;  3RAS A;  3AU9 A;  4Y6P A;  1SC5 A;  2Y1F A;  1MW1 A;  4ZQF A;  4AYS A;  1ZS2 A;  5JBI A;  4FLO A;  3A14 A;  1RP3 A;  3WQQ A;  4ZQG A;  3CZL A;  2O7G A;  2JCV A;  4NQW A;  5JAZ A;  2Y1D A;  4A03 A;  1MW0 A;  3IIE A;  1K5H A;  5JMP A;  4FLR A;  3ANM A;  3ZHY A;  4KP7 A;  4OOE A;  4ZQE A;  5JC1 A;  1R0K A;  1H3L A;  3ZHZ A;  3R0I A;  2Y1C A;  2MAP A;  2JD1 A;  3ZI0 A;  3CZK A;  4ZQH A;  4CXF A;  4LUP A;  1OR7 A;  3UCQ A;  2Y1G A;  2Y1E A;  3ZHX A;  3UER A;  4ZN6 A;  1ONP A;  3WQS B;  2EGH A;  2JD0 A;  2JD2 A;  1JVS A;  1Q0H A;  4GAE A;  1Q0L A;  1MVY A;  1T1S A;  5JNL A;  3CZE A;  5JMW A;  3AUA A;  4FLS A;  1T1R A;  3UEQ A;  3ANN A;  3ANL A;  1JGI A;  2MAO A; 
#chains in the Genus database with same CATH topology
 5HNH A;  1MW2 A;  3AU8 A;  4K5N A;  2WPG A;  4ZX5 A;  4ZX3 A;  1Q0Q A;  4X2U A;  4ZW6 A;  4FCA A;  5DYF A;  4OOF A;  2B61 A;  4RCV A;  2HPT A;  2ZXG A;  4XN1 A;  5JO0 A;  3A06 A;  1ONO A;  5DUL A;  4R7L A;  5HLT A;  1X3Z A;  1S46 A;  3B2P A;  1JG9 A;  1H19 A;  2XPZ A;  3CHR A;  3FU3 A;  4Y6R A;  4FLQ A;  2QVW A;  2R70 A;  3CZG A;  4XN4 A;  3T0Y A;  2C5Z A;  2JCX A;  4GAA A;  2FFL A;  3WQR A;  1R0L A;  1MW3 A;  4AIC A;  4K5P A;  4PU2 A;  4JND A;  4L2L A;  2WZG A;  2JCY A;  1ONN A;  3FHE A;  4J3B A;  4QME A;  4R5T A;  4ZX4 A;  3CHO A;  4XMX A;  5FWQ A;  3QJX A;  3FH5 A;  3T8V A;  3B7S A;  3CHP A;  4RVB A;  3B2X A;  4QHP A;  4XN7 A;  4Y67 A;  4AR8 A;  4PW4 A;  5HNF A;  2C82 A;  2R72 A;  4XO5 A;  1G5A A;  3PUU A;  3FTX A;  4Y6S A;  3FUH A;  3RAS A;  3FU0 A;  3U9W A;  3AU9 A;  4K5O A;  4QIR A;  4Y6P A;  4AR1 A;  2RJI A;  1SC5 A;  4XMZ A;  3Q43 A;  4K5M A;  2Y1F A;  1MW1 A;  4ZQF A;  5DLL A;  2JV7 A;  4AYS A;  3FUE A;  3FUL A;  3FUN A;  3FTS A;  1ZS2 A;  3B34 A;  5JBI A;  3RC8 A;  4FLO A;  4XO3 A;  4RSY A;  2A7O A;  3A14 A;  1RP3 A;  2GTQ A;  4Q4I A;  4XMU A;  3FUF A;  3WQQ A;  4ZQG A;  3CZL A;  2O7G A;  3B3B A;  2JCV A;  4NQW A;  5JAZ A;  5AEN A;  3VVL A;  2Y1D A;  3FH7 A;  4ZX6 A;  4A03 A;  3FU5 A;  3KED A;  1MW0 A;  2PGG A;  3IIE A;  3Q44 A;  1K5H A;  5JMP A;  4ZW3 A;  4FLR A;  3ANM A;  4PVB A;  4XN5 A;  3ZHY A;  4ARF A;  4KP7 A;  4XMV A;  2VJ8 A;  3RC3 A;  4OOE A;  4QUO A;  4ZQE A;  5JC1 A;  1GW6 A;  1R0K A;  1H3L A;  3ZHZ A;  3CHS A;  3JSZ A;  3B7R L;  2XQ0 A;  3R0I A;  2Y1C A;  2MAP A;  2JD1 A;  3ZI0 A;  3CZK A;  3FH8 A;  4ZQH A;  3FUD A;  2XPY A;  3EBH A;  3B7T A;  4CXF A;  1OR7 A;  4LUP A;  3FUM A;  3UCQ A;  4AR9 A;  4BKX A;  2Y1G A;  2Y1E A;  3HW2 A;  3ZHX A;  4DPR A;  3FTZ A;  4R5X A;  3UER A;  4ZN6 A;  1ONP A;  2PUS A;  3WQS B;  2EGH A;  3EBG A;  5EV7 A;  2WZF A;  2JD0 A;  2JD2 A;  3B37 A;  3FTU A;  1SQM A;  3CHQ A;  1JVS A;  4XN8 A;  3FUI A;  1Q0H A;  4XND A;  3JT1 A;  4GAE A;  1Q0L A;  3FUK A;  3EBI A;  3FTW A;  1MVY A;  2R59 A;  4XN9 A;  4ZQT A;  4XMW A;  1T1S A;  4XNB A;  3CIA A;  3VVM A;  5JNL A;  2DQ6 A;  2QJ1 A;  4MS6 A;  3FU6 A;  3FTV A;  4R5V A;  3CZE A;  3FTY A;  4XMT A;  1HS6 A;  4ZW7 A;  3AUA A;  2DQM A;  4ZW8 A;  5JMW A;  4FLS A;  2HPO A;  4XN2 A;  4XO4 A;  5BPP A;  2VLA A;  4Q4E A;  3B7U X;  1X3W A;  2PL5 A;  3FUJ A;  4K5L A;  1T1R A;  1SG7 A;  4QPE A;  3UEQ A;  4XNA A;  3ANN A;  3CXB A;  3ANL A;  4ZW5 A;  4MKT A;  1JGI A;  2MAO A; 
#chains in the Genus database with same CATH homology
 5HNH A;  1MW2 A;  3AU8 A;  4K5N A;  2WPG A;  4ZX5 A;  4ZX3 A;  1Q0Q A;  4X2U A;  4ZW6 A;  4FCA A;  5DYF A;  4OOF A;  2B61 A;  4RCV A;  2HPT A;  2ZXG A;  4XN1 A;  5JO0 A;  3A06 A;  1ONO A;  5DUL A;  4R7L A;  5HLT A;  1X3Z A;  1S46 A;  3B2P A;  1JG9 A;  1H19 A;  2XPZ A;  3CHR A;  3FU3 A;  4Y6R A;  4FLQ A;  2QVW A;  2R70 A;  3CZG A;  4XN4 A;  3T0Y A;  2C5Z A;  2JCX A;  4GAA A;  2FFL A;  3WQR A;  1R0L A;  1MW3 A;  4AIC A;  4K5P A;  4PU2 A;  4JND A;  4L2L A;  2WZG A;  2JCY A;  1ONN A;  3FHE A;  4J3B A;  4QME A;  4R5T A;  4ZX4 A;  3CHO A;  4XMX A;  5FWQ A;  3QJX A;  3FH5 A;  3T8V A;  3B7S A;  3CHP A;  4RVB A;  3B2X A;  4QHP A;  4XN7 A;  4Y67 A;  4AR8 A;  4PW4 A;  5HNF A;  2C82 A;  2R72 A;  4XO5 A;  1G5A A;  3PUU A;  3FTX A;  4Y6S A;  3FUH A;  3RAS A;  3FU0 A;  3U9W A;  3AU9 A;  4K5O A;  4QIR A;  4Y6P A;  4AR1 A;  2RJI A;  1SC5 A;  4XMZ A;  3Q43 A;  4K5M A;  2Y1F A;  1MW1 A;  4ZQF A;  5DLL A;  2JV7 A;  4AYS A;  3FUE A;  3FUL A;  3FUN A;  3FTS A;  1ZS2 A;  3B34 A;  5JBI A;  3RC8 A;  4FLO A;  4XO3 A;  4RSY A;  2A7O A;  3A14 A;  1RP3 A;  2GTQ A;  4Q4I A;  4XMU A;  3FUF A;  3WQQ A;  4ZQG A;  3CZL A;  2O7G A;  3B3B A;  2JCV A;  4NQW A;  5JAZ A;  5AEN A;  3VVL A;  2Y1D A;  3FH7 A;  4ZX6 A;  4A03 A;  3FU5 A;  3KED A;  1MW0 A;  2PGG A;  3IIE A;  3Q44 A;  1K5H A;  5JMP A;  4ZW3 A;  4FLR A;  3ANM A;  4PVB A;  4XN5 A;  3ZHY A;  4ARF A;  4KP7 A;  4XMV A;  2VJ8 A;  3RC3 A;  4OOE A;  4QUO A;  4ZQE A;  5JC1 A;  1GW6 A;  1R0K A;  1H3L A;  3ZHZ A;  3CHS A;  3JSZ A;  3B7R L;  2XQ0 A;  3R0I A;  2Y1C A;  2MAP A;  2JD1 A;  3ZI0 A;  3CZK A;  3FH8 A;  4ZQH A;  3FUD A;  2XPY A;  3EBH A;  3B7T A;  4CXF A;  1OR7 A;  4LUP A;  3FUM A;  3UCQ A;  4AR9 A;  4BKX A;  2Y1G A;  2Y1E A;  3ZHX A;  4DPR A;  3FTZ A;  4R5X A;  3UER A;  4ZN6 A;  1ONP A;  2PUS A;  3WQS B;  2EGH A;  3EBG A;  5EV7 A;  2WZF A;  2JD0 A;  2JD2 A;  3B37 A;  3FTU A;  1SQM A;  3CHQ A;  1JVS A;  4XN8 A;  3FUI A;  1Q0H A;  4XND A;  3JT1 A;  4GAE A;  1Q0L A;  3FUK A;  3EBI A;  3FTW A;  1MVY A;  2R59 A;  4XN9 A;  4ZQT A;  4XMW A;  1T1S A;  4XNB A;  3CIA A;  3VVM A;  5JNL A;  2DQ6 A;  2QJ1 A;  4MS6 A;  3FU6 A;  3FTV A;  4R5V A;  3CZE A;  3FTY A;  4XMT A;  1HS6 A;  4ZW7 A;  3AUA A;  2DQM A;  4ZW8 A;  5JMW A;  4FLS A;  2HPO A;  4XN2 A;  4XO4 A;  5BPP A;  2VLA A;  4Q4E A;  3B7U X;  1X3W A;  2PL5 A;  3FUJ A;  4K5L A;  1T1R A;  1SG7 A;  4QPE A;  3UEQ A;  4XNA A;  3ANN A;  3ANL A;  4ZW5 A;  4MKT A;  1JGI A;  2MAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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