2O7GA

Crystal structure of the pribnow box recognition region of sigc from mycobacterium tuberculosis
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
88
structure length
88
Chain Sequence
TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Mycobacterium tuberculosis
publication title Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosis.
pubmed doi rcsb
molecule keywords Probable RNA polymerase sigma-C factor
total genus 36
structure length 88
sequence length 88
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04542 Sigma70_r2 Sigma-70 region 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2o7gA00
1T1SA 3AU8A 1Q0QA 2Y1CA 4KP7A 4ZQGA 3ZHXA 3UEQA 4LUPA 3UERA 1ZS2A 5JNLA 2EGHA 3ZHZA 2MAPA 1Q0HA 2JD0A 2Y1DA 1H3LA 3WQRA 4AICA 4OOEA 3IIEA 1R0KA 1K5HA 4Y6RA 4ZQHA 2JCXA 3A14A 4Y6PA 5JC1A 1MW3A 2Y1EA 4FLQA 2C82A 1G5AA 4ZQEA 3ZI0A 3ZHYA 5JAZA 4CXFA 3RASA 1ONOA 3R0IA 1ONPA 1R0LA 1ONNA 2Y1GA 5JMWA 1JGIA 2JCVA 3CZEA 1MW2A 1S46A 3A06A 2JD2A 5JBIA 1OR7A 4ZQFA 3ANLA 2MAOA 1MW1A 4GAEA 3T0YA 4OOFA 1RP3A 4FLSA 3ANNA 4AYSA 5JMPA 4ZN6A 3WQSB 1T1RA 4NQWA 3WQQA 3UCQA 4Y6SA 3CZKA 4FLOA 2JD1A 3CZGA 2JCYA 1SC5A 2Y1FA 2O7GA 3CZLA 4RCVA 5DULA 1JVSA 3AU9A 4FLRA 3AUAA 1JG9A 1MVYA 3ANMA 4Y67A 4A03A 1MW0A 5JO0A 2WPGA 1Q0LA
chains in the Genus database with same CATH superfamily
1T1SA 3FUNA 4ZW7A 3AU8A 1Q0QA 2VLAA 2XPZA 2Y1CA 4XNAA 4AR1A 2FFLA 4DPRA 4KP7A 2GTQA 4R5VA 4AR9A 3FH7A 4ZQGA 3UEQA 3ZHXA 4QUOA 4LUPA 3B7RL 3B7TA 2PGGA 3UERA 4ZX6A 3FUDA 5BPPA 1ZS2A 4X2UA 2VJ8A 3FUMA 5JNLA 4XO4A 2EGHA 3RC8A 3B34A 3FH8A 4XMUA 3ZHZA 4GAAA 3EBGA 3CHRA 2MAPA 4XN1A 4PW4A 2Y1DA 1Q0HA 2JD0A 4JNDA 1H3LA 3FU3A 3QJXA 4K5NA 3WQRA 4ZQTA 4AICA 4MKTA 4OOEA 3IIEA 3Q44A 5AENA 5DLLA 1R0KA 4XN7A 1K5HA 4Y6RA 4R5TA 5EV7A 2WZFA 4ZQHA 2JCXA 3CIAA 4XN5A 3A14A 3FTWA 4Y6PA 2R72A 1MW3A 4RVBA 5JC1A 2Y1EA 4FLQA 2C82A 1G5AA 2DQMA 4XMZA 4QIRA 4ZQEA 4ZW8A 5HLTA 3ZI0A 1GW6A 3Q43A 3RC3A 3EBHA 3ZHYA 4XN9A 5JAZA 3FTXA 4QPEA 5FWQA 4CXFA 3RASA 3FH5A 3FUHA 3JSZA 2HPOA 2R70A 1ONOA 4XMXA 4ZX4A 4ZX3A 5HNFA 4K5OA 3R0IA 1ONPA 1R0LA 1ONNA 2Y1GA 3PUUA 3FTZA 3FUKA 4R7LA 1JGIA 3B37A 5JMWA 2JCVA 3B3BA 3CZEA 2QJ1A 2QVWA 1MW2A 3CHOA 1S46A 3B2PA 4XN4A 3A06A 1SQMA 3FU5A 2JD2A 3FTVA 4PU2A 5JBIA 1OR7A 2DQ6A 4ZQFA 3T8VA 3FTUA 3ANLA 2MAOA 4K5LA 1MW1A 2PL5A 3KEDA 3B2XA 4XMWA 4ZX5A 4GAEA 3T0YA 3VVMA 4OOFA 1RP3A 3CXBA 4XNBA 2JV7A 4XN2A 3CHPA 4MS6A 4FLSA 4ZW3A 3CHSA 4K5MA 3ANNA 4QHPA 2ZXGA 3FULA 3VVLA 4AYSA 4XN8A 4RSYA 5JMPA 4ZN6A 3B7SA 4PVBA 3WQSB 1T1RA 3JT1A 4NQWA 3WQQA 3UCQA 2XPYA 3CZKA 4Y6SA 3FTYA 3HW2A 4FLOA 4XMVA 4Q4IA 2JD1A 3CZGA 2JCYA 1SC5A 2Y1FA 2O7GA 4BKXA 3FU0A 2RJIA 3FU6A 3FTSA 3CZLA 2HPTA 3EBIA 4RCVA 5DULA 1JVSA 3AU9A 3FUEA 1X3WA 2C5ZA 4FLRA 3AUAA 4XNDA 4AR8A 1JG9A 2R59A 4FCAA 4XO3A 1MVYA 2WZGA 3CHQA 3ANMA 4L2LA 4J3BA 4ZW6A 1X3ZA 4QMEA 2PUSA 4Q4EA 3FUIA 5HNHA 2A7OA 4Y67A 3B7UX 3U9WA 4XMTA 1SG7A 3FUFA 3FUJA 4A03A 1H19A 4K5PA 1MW0A 4R5XA 5DYFA 1HS6A 3FHEA 2XQ0A 4XO5A 5JO0A 2WPGA 1Q0LA 4ARFA 2B61A 4ZW5A
chains in the Genus database with same CATH topology
1T1SA 3FUNA 4ZW7A 3AU8A 1Q0QA 2VLAA 2XPZA 2Y1CA 4XNAA 4AR1A 2FFLA 4DPRA 4KP7A 2GTQA 4R5VA 4AR9A 3FH7A 4ZQGA 3UEQA 3ZHXA 4QUOA 4LUPA 3B7RL 3B7TA 2PGGA 3UERA 4ZX6A 3FUDA 5BPPA 1ZS2A 4X2UA 2VJ8A 3FUMA 5JNLA 4XO4A 2EGHA 3RC8A 3B34A 3FH8A 4XMUA 3ZHZA 4GAAA 3EBGA 3CHRA 2MAPA 4XN1A 4PW4A 2Y1DA 1Q0HA 2JD0A 4JNDA 1H3LA 3FU3A 3QJXA 4K5NA 3WQRA 4ZQTA 4AICA 4MKTA 4OOEA 3IIEA 3Q44A 5AENA 5DLLA 1R0KA 4XN7A 1K5HA 4Y6RA 4R5TA 5EV7A 2WZFA 4ZQHA 2JCXA 3CIAA 4XN5A 3A14A 3FTWA 4Y6PA 2R72A 1MW3A 4RVBA 5JC1A 2Y1EA 4FLQA 2C82A 1G5AA 2DQMA 4XMZA 4QIRA 4ZQEA 4ZW8A 5HLTA 3ZI0A 1GW6A 3Q43A 3RC3A 3EBHA 3ZHYA 4XN9A 5JAZA 3FTXA 4QPEA 5FWQA 4CXFA 3RASA 3FH5A 3FUHA 3JSZA 2HPOA 2R70A 1ONOA 4XMXA 4ZX4A 4ZX3A 5HNFA 4K5OA 3R0IA 1ONPA 1R0LA 1ONNA 2Y1GA 3PUUA 3FTZA 3FUKA 4R7LA 1JGIA 3B37A 5JMWA 2JCVA 3B3BA 3CZEA 2QJ1A 2QVWA 1MW2A 3CHOA 1S46A 3B2PA 4XN4A 3A06A 1SQMA 3FU5A 2JD2A 3FTVA 4PU2A 5JBIA 1OR7A 2DQ6A 4ZQFA 3T8VA 3FTUA 3ANLA 2MAOA 4K5LA 1MW1A 2PL5A 3KEDA 3B2XA 4XMWA 4ZX5A 4GAEA 3T0YA 3VVMA 4OOFA 1RP3A 4XNBA 2JV7A 4XN2A 3CHPA 4MS6A 4FLSA 4ZW3A 3CHSA 4K5MA 3ANNA 4QHPA 2ZXGA 3FULA 3VVLA 4AYSA 4XN8A 4RSYA 5JMPA 4ZN6A 3B7SA 4PVBA 3WQSB 1T1RA 3JT1A 4NQWA 3WQQA 3UCQA 2XPYA 3CZKA 4Y6SA 3FTYA 4FLOA 4XMVA 4Q4IA 2JD1A 3CZGA 2JCYA 1SC5A 2Y1FA 2O7GA 4BKXA 3FU0A 2RJIA 3FU6A 3FTSA 3CZLA 2HPTA 3EBIA 4RCVA 5DULA 1JVSA 3AU9A 3FUEA 1X3WA 2C5ZA 4FLRA 3AUAA 4XNDA 4AR8A 1JG9A 2R59A 4FCAA 4XO3A 1MVYA 2WZGA 3CHQA 3ANMA 4L2LA 4J3BA 4ZW6A 1X3ZA 4QMEA 2PUSA 4Q4EA 3FUIA 5HNHA 2A7OA 4Y67A 3B7UX 3U9WA 4XMTA 1SG7A 3FUFA 3FUJA 4A03A 1H19A 4K5PA 1MW0A 4R5XA 5DYFA 1HS6A 3FHEA 2XQ0A 4XO5A 5JO0A 2WPGA 1Q0LA 4ARFA 2B61A 4ZW5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T1S A;  3AU8 A;  1Q0Q A;  2Y1C A;  4KP7 A;  4ZQG A;  3ZHX A;  3UEQ A;  4LUP A;  3UER A;  1ZS2 A;  5JNL A;  2EGH A;  3ZHZ A;  2MAP A;  1Q0H A;  2JD0 A;  2Y1D A;  1H3L A;  3WQR A;  4AIC A;  4OOE A;  3IIE A;  1R0K A;  1K5H A;  4Y6R A;  4ZQH A;  2JCX A;  3A14 A;  4Y6P A;  5JC1 A;  1MW3 A;  2Y1E A;  4FLQ A;  2C82 A;  1G5A A;  4ZQE A;  3ZI0 A;  3ZHY A;  5JAZ A;  4CXF A;  3RAS A;  1ONO A;  3R0I A;  1ONP A;  1R0L A;  1ONN A;  2Y1G A;  5JMW A;  1JGI A;  2JCV A;  3CZE A;  1MW2 A;  1S46 A;  3A06 A;  2JD2 A;  5JBI A;  1OR7 A;  4ZQF A;  3ANL A;  2MAO A;  1MW1 A;  4GAE A;  3T0Y A;  4OOF A;  1RP3 A;  4FLS A;  3ANN A;  4AYS A;  5JMP A;  4ZN6 A;  3WQS B;  1T1R A;  4NQW A;  3WQQ A;  3UCQ A;  4Y6S A;  3CZK A;  4FLO A;  2JD1 A;  3CZG A;  2JCY A;  1SC5 A;  2Y1F A;  2O7G A;  3CZL A;  4RCV A;  5DUL A;  1JVS A;  3AU9 A;  4FLR A;  3AUA A;  1JG9 A;  1MVY A;  3ANM A;  4Y67 A;  4A03 A;  1MW0 A;  5JO0 A;  2WPG A;  1Q0L A; 
#chains in the Genus database with same CATH topology
 1T1S A;  3FUN A;  4ZW7 A;  3AU8 A;  1Q0Q A;  2VLA A;  2XPZ A;  2Y1C A;  4XNA A;  4AR1 A;  2FFL A;  4DPR A;  4KP7 A;  2GTQ A;  4R5V A;  4AR9 A;  3FH7 A;  4ZQG A;  3UEQ A;  3ZHX A;  4QUO A;  4LUP A;  3B7R L;  3B7T A;  2PGG A;  3UER A;  4ZX6 A;  3FUD A;  5BPP A;  1ZS2 A;  4X2U A;  2VJ8 A;  3FUM A;  5JNL A;  4XO4 A;  2EGH A;  3RC8 A;  3B34 A;  3FH8 A;  4XMU A;  3ZHZ A;  4GAA A;  3EBG A;  3CHR A;  2MAP A;  4XN1 A;  4PW4 A;  2Y1D A;  1Q0H A;  2JD0 A;  4JND A;  1H3L A;  3FU3 A;  3QJX A;  4K5N A;  3WQR A;  4ZQT A;  4AIC A;  4MKT A;  4OOE A;  3IIE A;  3Q44 A;  5AEN A;  5DLL A;  1R0K A;  4XN7 A;  1K5H A;  4Y6R A;  4R5T A;  5EV7 A;  2WZF A;  4ZQH A;  2JCX A;  3CIA A;  4XN5 A;  3A14 A;  3FTW A;  4Y6P A;  2R72 A;  1MW3 A;  4RVB A;  5JC1 A;  2Y1E A;  4FLQ A;  2C82 A;  1G5A A;  2DQM A;  4XMZ A;  4QIR A;  4ZQE A;  4ZW8 A;  5HLT A;  3ZI0 A;  1GW6 A;  3Q43 A;  3RC3 A;  3EBH A;  3ZHY A;  4XN9 A;  5JAZ A;  3FTX A;  4QPE A;  5FWQ A;  4CXF A;  3RAS A;  3FH5 A;  3FUH A;  3JSZ A;  2HPO A;  2R70 A;  1ONO A;  4XMX A;  4ZX4 A;  4ZX3 A;  5HNF A;  4K5O A;  3R0I A;  1ONP A;  1R0L A;  1ONN A;  2Y1G A;  3PUU A;  3FTZ A;  3FUK A;  4R7L A;  1JGI A;  3B37 A;  5JMW A;  2JCV A;  3B3B A;  3CZE A;  2QJ1 A;  2QVW A;  1MW2 A;  3CHO A;  1S46 A;  3B2P A;  4XN4 A;  3A06 A;  1SQM A;  3FU5 A;  2JD2 A;  3FTV A;  4PU2 A;  5JBI A;  1OR7 A;  2DQ6 A;  4ZQF A;  3T8V A;  3FTU A;  3ANL A;  2MAO A;  4K5L A;  1MW1 A;  2PL5 A;  3KED A;  3B2X A;  4XMW A;  4ZX5 A;  4GAE A;  3T0Y A;  3VVM A;  4OOF A;  1RP3 A;  3CXB A;  4XNB A;  2JV7 A;  4XN2 A;  3CHP A;  4MS6 A;  4FLS A;  4ZW3 A;  3CHS A;  4K5M A;  3ANN A;  4QHP A;  2ZXG A;  3FUL A;  3VVL A;  4AYS A;  4XN8 A;  4RSY A;  5JMP A;  4ZN6 A;  3B7S A;  4PVB A;  3WQS B;  1T1R A;  3JT1 A;  4NQW A;  3WQQ A;  3UCQ A;  2XPY A;  3CZK A;  4Y6S A;  3FTY A;  3HW2 A;  4FLO A;  4XMV A;  4Q4I A;  2JD1 A;  3CZG A;  2JCY A;  1SC5 A;  2Y1F A;  2O7G A;  4BKX A;  3FU0 A;  2RJI A;  3FU6 A;  3FTS A;  3CZL A;  2HPT A;  3EBI A;  4RCV A;  5DUL A;  1JVS A;  3AU9 A;  3FUE A;  1X3W A;  2C5Z A;  4FLR A;  3AUA A;  4XND A;  4AR8 A;  1JG9 A;  2R59 A;  4FCA A;  4XO3 A;  1MVY A;  2WZG A;  3CHQ A;  3ANM A;  4L2L A;  4J3B A;  4ZW6 A;  1X3Z A;  4QME A;  2PUS A;  4Q4E A;  3FUI A;  5HNH A;  2A7O A;  4Y67 A;  3B7U X;  3U9W A;  4XMT A;  1SG7 A;  3FUF A;  3FUJ A;  4A03 A;  1H19 A;  4K5P A;  1MW0 A;  4R5X A;  5DYF A;  1HS6 A;  3FHE A;  2XQ0 A;  4XO5 A;  5JO0 A;  2WPG A;  1Q0L A;  4ARF A;  2B61 A;  4ZW5 A; 
#chains in the Genus database with same CATH homology
 1T1S A;  3FUN A;  4ZW7 A;  3AU8 A;  1Q0Q A;  2VLA A;  2XPZ A;  2Y1C A;  4XNA A;  4AR1 A;  2FFL A;  4DPR A;  4KP7 A;  2GTQ A;  4R5V A;  4AR9 A;  3FH7 A;  4ZQG A;  3UEQ A;  3ZHX A;  4QUO A;  4LUP A;  3B7R L;  3B7T A;  2PGG A;  3UER A;  4ZX6 A;  3FUD A;  5BPP A;  1ZS2 A;  4X2U A;  2VJ8 A;  3FUM A;  5JNL A;  4XO4 A;  2EGH A;  3RC8 A;  3B34 A;  3FH8 A;  4XMU A;  3ZHZ A;  4GAA A;  3EBG A;  3CHR A;  2MAP A;  4XN1 A;  4PW4 A;  2Y1D A;  1Q0H A;  2JD0 A;  4JND A;  1H3L A;  3FU3 A;  3QJX A;  4K5N A;  3WQR A;  4ZQT A;  4AIC A;  4MKT A;  4OOE A;  3IIE A;  3Q44 A;  5AEN A;  5DLL A;  1R0K A;  4XN7 A;  1K5H A;  4Y6R A;  4R5T A;  5EV7 A;  2WZF A;  4ZQH A;  2JCX A;  3CIA A;  4XN5 A;  3A14 A;  3FTW A;  4Y6P A;  2R72 A;  1MW3 A;  4RVB A;  5JC1 A;  2Y1E A;  4FLQ A;  2C82 A;  1G5A A;  2DQM A;  4XMZ A;  4QIR A;  4ZQE A;  4ZW8 A;  5HLT A;  3ZI0 A;  1GW6 A;  3Q43 A;  3RC3 A;  3EBH A;  3ZHY A;  4XN9 A;  5JAZ A;  3FTX A;  4QPE A;  5FWQ A;  4CXF A;  3RAS A;  3FH5 A;  3FUH A;  3JSZ A;  2HPO A;  2R70 A;  1ONO A;  4XMX A;  4ZX4 A;  4ZX3 A;  5HNF A;  4K5O A;  3R0I A;  1ONP A;  1R0L A;  1ONN A;  2Y1G A;  3PUU A;  3FTZ A;  3FUK A;  4R7L A;  1JGI A;  3B37 A;  5JMW A;  2JCV A;  3B3B A;  3CZE A;  2QJ1 A;  2QVW A;  1MW2 A;  3CHO A;  1S46 A;  3B2P A;  4XN4 A;  3A06 A;  1SQM A;  3FU5 A;  2JD2 A;  3FTV A;  4PU2 A;  5JBI A;  1OR7 A;  2DQ6 A;  4ZQF A;  3T8V A;  3FTU A;  3ANL A;  2MAO A;  4K5L A;  1MW1 A;  2PL5 A;  3KED A;  3B2X A;  4XMW A;  4ZX5 A;  4GAE A;  3T0Y A;  3VVM A;  4OOF A;  1RP3 A;  4XNB A;  2JV7 A;  4XN2 A;  3CHP A;  4MS6 A;  4FLS A;  4ZW3 A;  3CHS A;  4K5M A;  3ANN A;  4QHP A;  2ZXG A;  3FUL A;  3VVL A;  4AYS A;  4XN8 A;  4RSY A;  5JMP A;  4ZN6 A;  3B7S A;  4PVB A;  3WQS B;  1T1R A;  3JT1 A;  4NQW A;  3WQQ A;  3UCQ A;  2XPY A;  3CZK A;  4Y6S A;  3FTY A;  4FLO A;  4XMV A;  4Q4I A;  2JD1 A;  3CZG A;  2JCY A;  1SC5 A;  2Y1F A;  2O7G A;  4BKX A;  3FU0 A;  2RJI A;  3FU6 A;  3FTS A;  3CZL A;  2HPT A;  3EBI A;  4RCV A;  5DUL A;  1JVS A;  3AU9 A;  3FUE A;  1X3W A;  2C5Z A;  4FLR A;  3AUA A;  4XND A;  4AR8 A;  1JG9 A;  2R59 A;  4FCA A;  4XO3 A;  1MVY A;  2WZG A;  3CHQ A;  3ANM A;  4L2L A;  4J3B A;  4ZW6 A;  1X3Z A;  4QME A;  2PUS A;  4Q4E A;  3FUI A;  5HNH A;  2A7O A;  4Y67 A;  3B7U X;  3U9W A;  4XMT A;  1SG7 A;  3FUF A;  3FUJ A;  4A03 A;  1H19 A;  4K5P A;  1MW0 A;  4R5X A;  5DYF A;  1HS6 A;  3FHE A;  2XQ0 A;  4XO5 A;  5JO0 A;  2WPG A;  1Q0L A;  4ARF A;  2B61 A;  4ZW5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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