2O7GA

Crystal structure of the pribnow box recognition region of sigc from mycobacterium tuberculosis
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
88
structure length
88
Chain Sequence
TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Probable RNA polymerase sigma-C factor
publication title Structural and biophysical studies on two promoter recognition domains of the extra-cytoplasmic function sigma factor sigma(C) from Mycobacterium tuberculosis.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 36
structure length 88
sequence length 88
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04542 Sigma70_r2 Sigma-70 region 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2o7gA00
1ZS2A 2Y1CA 1R0LA 3T0YA 2JD0A 3WQSB 1MW3A 5DULA 3CZLA 1S46A 4OOEA 4Y6RA 1T1SA 3AU9A 3CZKA 4ZQGA 2MAPA 1RP3A 4ZQEA 2Y1GA 4ZQHA 1R0KA 1T1RA 4Y6PA 1MW0A 4OOFA 3ZI0A 1JVSA 2Y1EA 4Y67A 1MVYA 5JBIA 2Y1DA 1G5AA 4NQWA 4RCVA 3AU8A 5JC1A 4Y6SA 4LUPA 3UCQA 1ONOA 4AICA 4FLRA 4GAEA 1Q0QA 2JCYA 2Y1FA 2C82A 4FLSA 3ANNA 1MW1A 2JD1A 3WQRA 1MW2A 2MAOA 3ZHZA 2JD2A 1JG9A 1Q0HA 3UEQA 5JO0A 4A03A 1ONNA 2O7GA 4KP7A 1OR7A 3A06A 3CZEA 3ZHXA 1H3LA 1JGIA 3IIEA 3UERA 2EGHA 4FLQA 2JCXA 4AYSA 4ZQFA 5JMWA 3WQQA 4CXFA 2WPGA 1Q0LA 5JAZA 4ZN6A 1K5HA 3RASA 4FLOA 3ANLA 1ONPA 3ANMA 3A14A 5JMPA 1SC5A 3ZHYA 2JCVA 3AUAA 5JNLA 3R0IA 3CZGA
chains in the Genus database with same CATH superfamily
5HNHA 3B34A 1ZS2A 2Y1CA 1R0LA 2XPZA 3T0YA 2JD0A 4RSYA 3WQSB 3EBHA 2VJ8A 3CHRA 3HW2A 1MW3A 5DULA 3Q43A 3CZLA 1HS6A 1S46A 3FUKA 4OOEA 4QIRA 4AR8A 3AU9A 1T1SA 3JSZA 3CZKA 3B37A 4Y6RA 2PUSA 3FUMA 1RP3A 4ZQGA 5EV7A 4ZQEA 3FH5A 3FU6A 5DLLA 2MAPA 3B2PA 3CIAA 1X3WA 2Y1GA 2DQMA 1R0KA 1T1RA 4XNAA 4RVBA 4ZQHA 4ZX3A 5HLTA 4R7LA 2XQ0A 4Y6PA 4ZX5A 4JNDA 3FUHA 1MW0A 4DPRA 3QJXA 4XN5A 3RC3A 4OOFA 4XMZA 1JVSA 3ZI0A 2Y1EA 3FU0A 4QHPA 2QVWA 4Y67A 2VLAA 4MS6A 1MVYA 4XMWA 4XO3A 4AR9A 2Y1DA 5JBIA 1G5AA 2C5ZA 3FUJA 4NQWA 3CHSA 3FULA 4RCVA 4XNDA 3FUIA 5HNFA 1X3ZA 3FTUA 3B2XA 5AENA 3VVLA 3AU8A 5JC1A 4FCAA 4QPEA 4ZQTA 4Y6SA 2HPOA 2DQ6A 3UCQA 4LUPA 4K5LA 1ONOA 3FTZA 3VVMA 4AICA 4ZX4A 3B7UX 3EBGA 4FLRA 4GAEA 1Q0QA 2JCYA 2Y1FA 4R5VA 3B7TA 1GW6A 2C82A 5BPPA 4FLSA 4K5PA 4QUOA 3JT1A 3FTWA 4XN4A 3B7SA 4R5TA 3ANNA 2A7OA 4ZW3A 1MW1A 2JD1A 3B3BA 4J3BA 4K5NA 2PL5A 3WQRA 4XMVA 3FH8A 3FHEA 2RJIA 3FU5A 3FUFA 4K5MA 4Q4IA 4XMTA 3CXBA 4ZW5A 4ZX6A 1MW2A 2MAOA 2B61A 2JD2A 2R70A 4GAAA 3ZHZA 4X2UA 1JG9A 1Q0HA 3UEQA 5JO0A 4A03A 1ONNA 4BKXA 2O7GA 4K5OA 3B7RL 3FTSA 3FTYA 4AR1A 4KP7A 1OR7A 2WZGA 3A06A 1H19A 3CZEA 2R72A 4XO4A 4ZW8A 3ZHXA 3RC8A 5FWQA 3KEDA 1H3LA 5DYFA 1SQMA 1JGIA 4XN1A 3IIEA 3UERA 2EGHA 3CHPA 3FTVA 4FLQA 4XN2A 2XPYA 2JCXA 3Q44A 4XMXA 4ZW7A 3U9WA 4AYSA 3CHOA 3FUNA 4ZQFA 5JMWA 3WQQA 4CXFA 3FUDA 2WPGA 1SG7A 4ZW6A 3T8VA 4L2LA 1Q0LA 3FH7A 3PUUA 4MKTA 3FUEA 5JAZA 2PGGA 4PW4A 4PVBA 2QJ1A 4ZN6A 1K5HA 4XN7A 3RASA 4FLOA 3ANLA 1ONPA 2ZXGA 4PU2A 3ANMA 2WZFA 3A14A 4XMUA 2FFLA 3EBIA 4QMEA 4R5XA 2HPTA 3FTXA 5JMPA 1SC5A 3ZHYA 2R59A 2JCVA 3AUAA 4XO5A 4ARFA 2JV7A 2GTQA 4XNBA 5JNLA 3R0IA 3CHQA 4XN9A 3CZGA 4XN8A 4Q4EA 3FU3A
chains in the Genus database with same CATH topology
5HNHA 3B34A 1ZS2A 2Y1CA 1R0LA 2XPZA 3T0YA 2JD0A 4RSYA 3WQSB 3EBHA 2VJ8A 3CHRA 1MW3A 5DULA 3Q43A 3CZLA 1HS6A 1S46A 3FUKA 4OOEA 4QIRA 4AR8A 3AU9A 1T1SA 3JSZA 3CZKA 3B37A 4Y6RA 2PUSA 3FUMA 1RP3A 4ZQGA 5EV7A 4ZQEA 3FH5A 3FU6A 5DLLA 2MAPA 3B2PA 3CIAA 1X3WA 2Y1GA 2DQMA 1R0KA 1T1RA 4XNAA 4RVBA 4ZQHA 4ZX3A 5HLTA 4R7LA 2XQ0A 4Y6PA 4ZX5A 4JNDA 3FUHA 1MW0A 4DPRA 3QJXA 4XN5A 3RC3A 4OOFA 4XMZA 1JVSA 3ZI0A 2Y1EA 3FU0A 4QHPA 2QVWA 4Y67A 2VLAA 4MS6A 1MVYA 4XMWA 4XO3A 4AR9A 2Y1DA 5JBIA 1G5AA 2C5ZA 3FUJA 4NQWA 3CHSA 3FULA 4RCVA 4XNDA 3FUIA 5HNFA 1X3ZA 3FTUA 3B2XA 5AENA 3VVLA 3AU8A 5JC1A 4FCAA 4QPEA 4ZQTA 4Y6SA 2HPOA 2DQ6A 3UCQA 4LUPA 4K5LA 1ONOA 3FTZA 3VVMA 4AICA 4ZX4A 3B7UX 3EBGA 4FLRA 4GAEA 1Q0QA 2JCYA 2Y1FA 4R5VA 3B7TA 1GW6A 2C82A 5BPPA 4FLSA 4K5PA 4QUOA 3JT1A 3FTWA 4XN4A 3B7SA 4R5TA 3ANNA 2A7OA 4ZW3A 1MW1A 2JD1A 3B3BA 4J3BA 4K5NA 2PL5A 3WQRA 4XMVA 3FH8A 3FHEA 2RJIA 3FU5A 3FUFA 4K5MA 4Q4IA 4XMTA 4ZW5A 4ZX6A 1MW2A 2MAOA 2B61A 2JD2A 2R70A 4GAAA 3ZHZA 4X2UA 1JG9A 1Q0HA 3UEQA 5JO0A 4A03A 1ONNA 4BKXA 2O7GA 4K5OA 3B7RL 3FTSA 3FTYA 4AR1A 4KP7A 1OR7A 2WZGA 3A06A 1H19A 3CZEA 2R72A 4XO4A 4ZW8A 3ZHXA 3RC8A 5FWQA 3KEDA 1H3LA 5DYFA 1SQMA 1JGIA 4XN1A 3IIEA 3UERA 2EGHA 3CHPA 3FTVA 4FLQA 4XN2A 2XPYA 2JCXA 3Q44A 4XMXA 4ZW7A 3U9WA 4AYSA 3CHOA 3FUNA 4ZQFA 5JMWA 3WQQA 4CXFA 3FUDA 2WPGA 1SG7A 4ZW6A 3T8VA 4L2LA 1Q0LA 3FH7A 3PUUA 4MKTA 3FUEA 5JAZA 2PGGA 4PW4A 4PVBA 2QJ1A 4ZN6A 1K5HA 4XN7A 3RASA 4FLOA 3ANLA 1ONPA 2ZXGA 4PU2A 3ANMA 2WZFA 3A14A 4XMUA 2FFLA 3EBIA 4QMEA 4R5XA 2HPTA 3FTXA 5JMPA 1SC5A 3ZHYA 2R59A 2JCVA 3AUAA 4XO5A 4ARFA 2JV7A 2GTQA 4XNBA 5JNLA 3R0IA 3CHQA 4XN9A 3CZGA 4XN8A 4Q4EA 3FU3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZS2 A;  2Y1C A;  1R0L A;  3T0Y A;  2JD0 A;  3WQS B;  1MW3 A;  5DUL A;  3CZL A;  1S46 A;  4OOE A;  4Y6R A;  1T1S A;  3AU9 A;  3CZK A;  4ZQG A;  2MAP A;  1RP3 A;  4ZQE A;  2Y1G A;  4ZQH A;  1R0K A;  1T1R A;  4Y6P A;  1MW0 A;  4OOF A;  3ZI0 A;  1JVS A;  2Y1E A;  4Y67 A;  1MVY A;  5JBI A;  2Y1D A;  1G5A A;  4NQW A;  4RCV A;  3AU8 A;  5JC1 A;  4Y6S A;  4LUP A;  3UCQ A;  1ONO A;  4AIC A;  4FLR A;  4GAE A;  1Q0Q A;  2JCY A;  2Y1F A;  2C82 A;  4FLS A;  3ANN A;  1MW1 A;  2JD1 A;  3WQR A;  1MW2 A;  2MAO A;  3ZHZ A;  2JD2 A;  1JG9 A;  1Q0H A;  3UEQ A;  5JO0 A;  4A03 A;  1ONN A;  2O7G A;  4KP7 A;  1OR7 A;  3A06 A;  3CZE A;  3ZHX A;  1H3L A;  1JGI A;  3IIE A;  3UER A;  2EGH A;  4FLQ A;  2JCX A;  4AYS A;  4ZQF A;  5JMW A;  3WQQ A;  4CXF A;  2WPG A;  1Q0L A;  5JAZ A;  4ZN6 A;  1K5H A;  3RAS A;  4FLO A;  3ANL A;  1ONP A;  3ANM A;  3A14 A;  5JMP A;  1SC5 A;  3ZHY A;  2JCV A;  3AUA A;  5JNL A;  3R0I A;  3CZG A; 
#chains in the Genus database with same CATH topology
 5HNH A;  3B34 A;  1ZS2 A;  2Y1C A;  1R0L A;  2XPZ A;  3T0Y A;  2JD0 A;  4RSY A;  3WQS B;  3EBH A;  2VJ8 A;  3CHR A;  3HW2 A;  1MW3 A;  5DUL A;  3Q43 A;  3CZL A;  1HS6 A;  1S46 A;  3FUK A;  4OOE A;  4QIR A;  4AR8 A;  3AU9 A;  1T1S A;  3JSZ A;  3CZK A;  3B37 A;  4Y6R A;  2PUS A;  3FUM A;  1RP3 A;  4ZQG A;  5EV7 A;  4ZQE A;  3FH5 A;  3FU6 A;  5DLL A;  2MAP A;  3B2P A;  3CIA A;  1X3W A;  2Y1G A;  2DQM A;  1R0K A;  1T1R A;  4XNA A;  4RVB A;  4ZQH A;  4ZX3 A;  5HLT A;  4R7L A;  2XQ0 A;  4Y6P A;  4ZX5 A;  4JND A;  3FUH A;  1MW0 A;  4DPR A;  3QJX A;  4XN5 A;  3RC3 A;  4OOF A;  4XMZ A;  1JVS A;  3ZI0 A;  2Y1E A;  3FU0 A;  4QHP A;  2QVW A;  4Y67 A;  2VLA A;  4MS6 A;  1MVY A;  4XMW A;  4XO3 A;  4AR9 A;  2Y1D A;  5JBI A;  1G5A A;  2C5Z A;  3FUJ A;  4NQW A;  3CHS A;  3FUL A;  4RCV A;  4XND A;  3FUI A;  5HNF A;  1X3Z A;  3FTU A;  3B2X A;  5AEN A;  3VVL A;  3AU8 A;  5JC1 A;  4FCA A;  4QPE A;  4ZQT A;  4Y6S A;  2HPO A;  2DQ6 A;  3UCQ A;  4LUP A;  4K5L A;  1ONO A;  3FTZ A;  3VVM A;  4AIC A;  4ZX4 A;  3B7U X;  3EBG A;  4FLR A;  4GAE A;  1Q0Q A;  2JCY A;  2Y1F A;  4R5V A;  3B7T A;  1GW6 A;  2C82 A;  5BPP A;  4FLS A;  4K5P A;  4QUO A;  3JT1 A;  3FTW A;  4XN4 A;  3B7S A;  4R5T A;  3ANN A;  2A7O A;  4ZW3 A;  1MW1 A;  2JD1 A;  3B3B A;  4J3B A;  4K5N A;  2PL5 A;  3WQR A;  4XMV A;  3FH8 A;  3FHE A;  2RJI A;  3FU5 A;  3FUF A;  4K5M A;  4Q4I A;  4XMT A;  3CXB A;  4ZW5 A;  4ZX6 A;  1MW2 A;  2MAO A;  2B61 A;  2JD2 A;  2R70 A;  4GAA A;  3ZHZ A;  4X2U A;  1JG9 A;  1Q0H A;  3UEQ A;  5JO0 A;  4A03 A;  1ONN A;  4BKX A;  2O7G A;  4K5O A;  3B7R L;  3FTS A;  3FTY A;  4AR1 A;  4KP7 A;  1OR7 A;  2WZG A;  3A06 A;  1H19 A;  3CZE A;  2R72 A;  4XO4 A;  4ZW8 A;  3ZHX A;  3RC8 A;  5FWQ A;  3KED A;  1H3L A;  5DYF A;  1SQM A;  1JGI A;  4XN1 A;  3IIE A;  3UER A;  2EGH A;  3CHP A;  3FTV A;  4FLQ A;  4XN2 A;  2XPY A;  2JCX A;  3Q44 A;  4XMX A;  4ZW7 A;  3U9W A;  4AYS A;  3CHO A;  3FUN A;  4ZQF A;  5JMW A;  3WQQ A;  4CXF A;  3FUD A;  2WPG A;  1SG7 A;  4ZW6 A;  3T8V A;  4L2L A;  1Q0L A;  3FH7 A;  3PUU A;  4MKT A;  3FUE A;  5JAZ A;  2PGG A;  4PW4 A;  4PVB A;  2QJ1 A;  4ZN6 A;  1K5H A;  4XN7 A;  3RAS A;  4FLO A;  3ANL A;  1ONP A;  2ZXG A;  4PU2 A;  3ANM A;  2WZF A;  3A14 A;  4XMU A;  2FFL A;  3EBI A;  4QME A;  4R5X A;  2HPT A;  3FTX A;  5JMP A;  1SC5 A;  3ZHY A;  2R59 A;  2JCV A;  3AUA A;  4XO5 A;  4ARF A;  2JV7 A;  2GTQ A;  4XNB A;  5JNL A;  3R0I A;  3CHQ A;  4XN9 A;  3CZG A;  4XN8 A;  4Q4E A;  3FU3 A; 
#chains in the Genus database with same CATH homology
 5HNH A;  3B34 A;  1ZS2 A;  2Y1C A;  1R0L A;  2XPZ A;  3T0Y A;  2JD0 A;  4RSY A;  3WQS B;  3EBH A;  2VJ8 A;  3CHR A;  1MW3 A;  5DUL A;  3Q43 A;  3CZL A;  1HS6 A;  1S46 A;  3FUK A;  4OOE A;  4QIR A;  4AR8 A;  3AU9 A;  1T1S A;  3JSZ A;  3CZK A;  3B37 A;  4Y6R A;  2PUS A;  3FUM A;  1RP3 A;  4ZQG A;  5EV7 A;  4ZQE A;  3FH5 A;  3FU6 A;  5DLL A;  2MAP A;  3B2P A;  3CIA A;  1X3W A;  2Y1G A;  2DQM A;  1R0K A;  1T1R A;  4XNA A;  4RVB A;  4ZQH A;  4ZX3 A;  5HLT A;  4R7L A;  2XQ0 A;  4Y6P A;  4ZX5 A;  4JND A;  3FUH A;  1MW0 A;  4DPR A;  3QJX A;  4XN5 A;  3RC3 A;  4OOF A;  4XMZ A;  1JVS A;  3ZI0 A;  2Y1E A;  3FU0 A;  4QHP A;  2QVW A;  4Y67 A;  2VLA A;  4MS6 A;  1MVY A;  4XMW A;  4XO3 A;  4AR9 A;  2Y1D A;  5JBI A;  1G5A A;  2C5Z A;  3FUJ A;  4NQW A;  3CHS A;  3FUL A;  4RCV A;  4XND A;  3FUI A;  5HNF A;  1X3Z A;  3FTU A;  3B2X A;  5AEN A;  3VVL A;  3AU8 A;  5JC1 A;  4FCA A;  4QPE A;  4ZQT A;  4Y6S A;  2HPO A;  2DQ6 A;  3UCQ A;  4LUP A;  4K5L A;  1ONO A;  3FTZ A;  3VVM A;  4AIC A;  4ZX4 A;  3B7U X;  3EBG A;  4FLR A;  4GAE A;  1Q0Q A;  2JCY A;  2Y1F A;  4R5V A;  3B7T A;  1GW6 A;  2C82 A;  5BPP A;  4FLS A;  4K5P A;  4QUO A;  3JT1 A;  3FTW A;  4XN4 A;  3B7S A;  4R5T A;  3ANN A;  2A7O A;  4ZW3 A;  1MW1 A;  2JD1 A;  3B3B A;  4J3B A;  4K5N A;  2PL5 A;  3WQR A;  4XMV A;  3FH8 A;  3FHE A;  2RJI A;  3FU5 A;  3FUF A;  4K5M A;  4Q4I A;  4XMT A;  4ZW5 A;  4ZX6 A;  1MW2 A;  2MAO A;  2B61 A;  2JD2 A;  2R70 A;  4GAA A;  3ZHZ A;  4X2U A;  1JG9 A;  1Q0H A;  3UEQ A;  5JO0 A;  4A03 A;  1ONN A;  4BKX A;  2O7G A;  4K5O A;  3B7R L;  3FTS A;  3FTY A;  4AR1 A;  4KP7 A;  1OR7 A;  2WZG A;  3A06 A;  1H19 A;  3CZE A;  2R72 A;  4XO4 A;  4ZW8 A;  3ZHX A;  3RC8 A;  5FWQ A;  3KED A;  1H3L A;  5DYF A;  1SQM A;  1JGI A;  4XN1 A;  3IIE A;  3UER A;  2EGH A;  3CHP A;  3FTV A;  4FLQ A;  4XN2 A;  2XPY A;  2JCX A;  3Q44 A;  4XMX A;  4ZW7 A;  3U9W A;  4AYS A;  3CHO A;  3FUN A;  4ZQF A;  5JMW A;  3WQQ A;  4CXF A;  3FUD A;  2WPG A;  1SG7 A;  4ZW6 A;  3T8V A;  4L2L A;  1Q0L A;  3FH7 A;  3PUU A;  4MKT A;  3FUE A;  5JAZ A;  2PGG A;  4PW4 A;  4PVB A;  2QJ1 A;  4ZN6 A;  1K5H A;  4XN7 A;  3RAS A;  4FLO A;  3ANL A;  1ONP A;  2ZXG A;  4PU2 A;  3ANM A;  2WZF A;  3A14 A;  4XMU A;  2FFL A;  3EBI A;  4QME A;  4R5X A;  2HPT A;  3FTX A;  5JMP A;  1SC5 A;  3ZHY A;  2R59 A;  2JCV A;  3AUA A;  4XO5 A;  4ARF A;  2JV7 A;  2GTQ A;  4XNB A;  5JNL A;  3R0I A;  3CHQ A;  4XN9 A;  3CZG A;  4XN8 A;  4Q4E A;  3FU3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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