1NH1 | Genus

Total Genus 96

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	290
structure length	290
Chain Sequence	ALPGPSQRQLEVYDQCLIGAARWPDDSSKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Avirulence protein
source organism	Pseudomonas syringae
publication title	Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae. pubmed doi rcsb
molecule keywords	Avirulence B protein
total genus	96
structure length	290
sequence length	290
ec nomenclature
pdb deposition date	2002-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05394	AvrB_AvrC	Avirulence protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.20	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fic-like fold	1nh1A01

2NUDA 1NH1A 2NUNA
chains in the Genus database with same CATH superfamily

2VZAA 3SN9A 5CKLA 4X2EA 2NUDA 4X2CA 4U0UA 5CGLA 4U0SA 3SE5A 2JK8A 2VY3A 3LETA 3N3UA 5EU0A 3ZLMA 5CMTA 3ZCBA 3CUCA 1NH1A 5JFZA 3SHGA 2NUNA 4PY3A 4XI8A 5JFFA 4N67A 4X2DA 4NPSA 4U04A 4U07A 4M16A 3ZC7A 5JJ7A 2G03A 3S6AA 4WGJA 5JJ6A 4ITRA 2F6SA 4LU4A 4U0ZA
chains in the Genus database with same CATH topology

2NUDA 1NH1A 2NUNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2NUD A;  1NH1 A;  2NUN A; 
#chains in the Genus database with same CATH topology
 2VZA A;  3SN9 A;  5CKL A;  4X2E A;  2NUD A;  4X2C A;  4U0U A;  5CGL A;  4U0S A;  3SE5 A;  2JK8 A;  2VY3 A;  3LET A;  3N3U A;  5EU0 A;  3ZLM A;  5CMT A;  3ZCB A;  3CUC A;  1NH1 A;  5JFZ A;  3SHG A;  2NUN A;  4PY3 A;  4XI8 A;  5JFF A;  4N67 A;  4X2D A;  4NPS A;  4U04 A;  4U07 A;  4M16 A;  3ZC7 A;  5JJ7 A;  2G03 A;  3S6A A;  4WGJ A;  5JJ6 A;  4ITR A;  2F6S A;  4LU4 A;  4U0Z A; 
#chains in the Genus database with same CATH homology
 2NUD A;  1NH1 A;  2NUN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NH1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations