5JFFA

E. coli ecfict mutant g55r in complex with ecfica
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
189
structure length
188
Chain Sequence
DPYLYPLDIMRNRLNIHQQQRLEQAAYEMTALRAATIELGPLVRRLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin.
pubmed doi rcsb
source organism Escherichia coli (strain k12)
molecule tags Transferase
molecule keywords Probable adenosine monophosphate-protein transferase fic
total genus 71
structure length 188
sequence length 189
chains with identical sequence C
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2016-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 5jffA00
4X2CA 4U0ZA 3LETA 4U04A 3ZC7A 4U07A 4U0SA 4WGJA 2F6SA 2JK8A 2VZAA 5CKLA 4XI8A 4U0UA 3S6AA 3SHGA 5JJ6A 4NPSA 4X2EA 3ZCBA 4ITRA 5EU0A 2G03A 3CUCA 4N67A 5CMTA 3SN9A 5JFZA 5CGLA 4X2DA 4LU4A 5JJ7A 3SE5A 3N3UA 3ZLMA 5JFFA 4PY3A 2VY3A 4M16A
chains in the Genus database with same CATH superfamily
4X2CA 4U0ZA 3LETA 4U04A 3ZC7A 4U07A 4U0SA 4WGJA 2JK8A 2VZAA 5CKLA 1NH1A 4XI8A 4U0UA 3S6AA 3SHGA 5JJ6A 4NPSA 4X2EA 3ZCBA 4ITRA 4PY3A 2NUDA 5EU0A 2G03A 3CUCA 4N67A 5CMTA 2NUNA 3SN9A 5JFZA 5CGLA 4X2DA 4LU4A 5JJ7A 3SE5A 3N3UA 3ZLMA 5JFFA 2F6SA 2VY3A 4M16A
chains in the Genus database with same CATH topology
4X2CA 4U0ZA 3LETA 4U04A 3ZC7A 4U07A 4U0SA 4WGJA 2F6SA 2JK8A 2VZAA 5CKLA 4XI8A 4U0UA 3S6AA 3SHGA 5JJ6A 4NPSA 4X2EA 3ZCBA 4ITRA 5EU0A 2G03A 3CUCA 4N67A 5CMTA 3SN9A 5JFZA 5CGLA 4X2DA 4LU4A 5JJ7A 3SE5A 3N3UA 3ZLMA 5JFFA 4PY3A 2VY3A 4M16A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X2C A;  4U0Z A;  3LET A;  4U04 A;  3ZC7 A;  4U07 A;  4U0S A;  4WGJ A;  2F6S A;  2JK8 A;  2VZA A;  5CKL A;  4XI8 A;  4U0U A;  3S6A A;  3SHG A;  5JJ6 A;  4NPS A;  4X2E A;  3ZCB A;  4ITR A;  5EU0 A;  2G03 A;  3CUC A;  4N67 A;  5CMT A;  3SN9 A;  5JFZ A;  5CGL A;  4X2D A;  4LU4 A;  5JJ7 A;  3SE5 A;  3N3U A;  3ZLM A;  5JFF A;  4PY3 A;  2VY3 A;  4M16 A; 
#chains in the Genus database with same CATH topology
 4X2C A;  4U0Z A;  3LET A;  4U04 A;  3ZC7 A;  4U07 A;  4U0S A;  4WGJ A;  2JK8 A;  2VZA A;  5CKL A;  1NH1 A;  4XI8 A;  4U0U A;  3S6A A;  3SHG A;  5JJ6 A;  4NPS A;  4X2E A;  3ZCB A;  4ITR A;  4PY3 A;  2NUD A;  5EU0 A;  2G03 A;  3CUC A;  4N67 A;  5CMT A;  2NUN A;  3SN9 A;  5JFZ A;  5CGL A;  4X2D A;  4LU4 A;  5JJ7 A;  3SE5 A;  3N3U A;  3ZLM A;  5JFF A;  2F6S A;  2VY3 A;  4M16 A; 
#chains in the Genus database with same CATH homology
 4X2C A;  4U0Z A;  3LET A;  4U04 A;  3ZC7 A;  4U07 A;  4U0S A;  4WGJ A;  2F6S A;  2JK8 A;  2VZA A;  5CKL A;  4XI8 A;  4U0U A;  3S6A A;  3SHG A;  5JJ6 A;  4NPS A;  4X2E A;  3ZCB A;  4ITR A;  5EU0 A;  2G03 A;  3CUC A;  4N67 A;  5CMT A;  3SN9 A;  5JFZ A;  5CGL A;  4X2D A;  4LU4 A;  5JJ7 A;  3SE5 A;  3N3U A;  3ZLM A;  5JFF A;  4PY3 A;  2VY3 A;  4M16 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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