3ZCBA

Vbht fic protein from bartonella schoenbuchensis in complex with vbha antitoxin mutant e24g and atp
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
189
structure length
185
Chain Sequence
DPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDISKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
pubmed doi rcsb
source organism Bartonella schoenbuchensis
molecule tags Transferase/antitoxin
molecule keywords ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT
total genus 71
structure length 185
sequence length 189
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2012-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 3zcbA00
5CGLA 4X2CA 3ZLMA 5JJ6A 4LU4A 2F6SA 4U0UA 4WGJA 4X2EA 5CMTA 5EU0A 3ZCBA 4N67A 4U04A 3N3UA 4U0ZA 3SHGA 5JFZA 4U0SA 2VY3A 3LETA 4M16A 2VZAA 5JJ7A 5CKLA 4PY3A 4U07A 3ZC7A 4NPSA 3SN9A 4ITRA 4XI8A 3S6AA 2JK8A 3SE5A 5JFFA 3CUCA 2G03A 4X2DA
chains in the Genus database with same CATH superfamily
5CGLA 1NH1A 4X2CA 3ZLMA 5JJ6A 4LU4A 2F6SA 4U0UA 4WGJA 4X2EA 5CMTA 5EU0A 3ZCBA 4N67A 2NUDA 4U04A 3N3UA 4U0ZA 3SHGA 5JFZA 4U0SA 2VY3A 3LETA 4M16A 2VZAA 5JJ7A 5CKLA 4PY3A 4U07A 3ZC7A 4NPSA 3SN9A 4ITRA 4XI8A 3S6AA 2JK8A 3SE5A 5JFFA 2NUNA 3CUCA 2G03A 4X2DA
chains in the Genus database with same CATH topology
5CGLA 4X2CA 3ZLMA 5JJ6A 4LU4A 2F6SA 4U0UA 4WGJA 4X2EA 5CMTA 5EU0A 3ZCBA 4N67A 4U04A 3N3UA 4U0ZA 3SHGA 5JFZA 4U0SA 2VY3A 3LETA 4M16A 2VZAA 5JJ7A 5CKLA 4PY3A 4U07A 3ZC7A 4NPSA 3SN9A 4ITRA 4XI8A 3S6AA 2JK8A 3SE5A 5JFFA 3CUCA 2G03A 4X2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CGL A;  4X2C A;  3ZLM A;  5JJ6 A;  4LU4 A;  2F6S A;  4U0U A;  4WGJ A;  4X2E A;  5CMT A;  5EU0 A;  3ZCB A;  4N67 A;  4U04 A;  3N3U A;  4U0Z A;  3SHG A;  5JFZ A;  4U0S A;  2VY3 A;  3LET A;  4M16 A;  2VZA A;  5JJ7 A;  5CKL A;  4PY3 A;  4U07 A;  3ZC7 A;  4NPS A;  3SN9 A;  4ITR A;  4XI8 A;  3S6A A;  2JK8 A;  3SE5 A;  5JFF A;  3CUC A;  2G03 A;  4X2D A; 
#chains in the Genus database with same CATH topology
 5CGL A;  1NH1 A;  4X2C A;  3ZLM A;  5JJ6 A;  4LU4 A;  2F6S A;  4U0U A;  4WGJ A;  4X2E A;  5CMT A;  5EU0 A;  3ZCB A;  4N67 A;  2NUD A;  4U04 A;  3N3U A;  4U0Z A;  3SHG A;  5JFZ A;  4U0S A;  2VY3 A;  3LET A;  4M16 A;  2VZA A;  5JJ7 A;  5CKL A;  4PY3 A;  4U07 A;  3ZC7 A;  4NPS A;  3SN9 A;  4ITR A;  4XI8 A;  3S6A A;  2JK8 A;  3SE5 A;  5JFF A;  2NUN A;  3CUC A;  2G03 A;  4X2D A; 
#chains in the Genus database with same CATH homology
 5CGL A;  4X2C A;  3ZLM A;  5JJ6 A;  4LU4 A;  2F6S A;  4U0U A;  4WGJ A;  4X2E A;  5CMT A;  5EU0 A;  3ZCB A;  4N67 A;  4U04 A;  3N3U A;  4U0Z A;  3SHG A;  5JFZ A;  4U0S A;  2VY3 A;  3LET A;  4M16 A;  2VZA A;  5JJ7 A;  5CKL A;  4PY3 A;  4U07 A;  3ZC7 A;  4NPS A;  3SN9 A;  4ITR A;  4XI8 A;  3S6A A;  2JK8 A;  3SE5 A;  5JFF A;  3CUC A;  2G03 A;  4X2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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