1NH1A

Crystal structure of the type iii effector avrb from pseudomonas syringae.
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
290
structure length
290
Chain Sequence
ALPGPSQRQLEVYDQCLIGAARWPDDSSKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae.
pubmed doi rcsb
source organism Pseudomonas syringae
molecule tags Avirulence protein
molecule keywords Avirulence B protein
total genus 96
structure length 290
sequence length 290
ec nomenclature
pdb deposition date 2002-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05394 AvrB_AvrC Avirulence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.20 Mainly Alpha Orthogonal Bundle Fic-like fold Fic-like fold 1nh1A01
2NUNA 1NH1A 2NUDA
chains in the Genus database with same CATH superfamily
3SE5A 3ZCBA 4U04A 4U07A 3ZLMA 5CGLA 2G03A 3N3UA 4M16A 3ZC7A 2F6SA 4X2CA 5JJ7A 4U0ZA 4N67A 5JFFA 3SHGA 2NUNA 4X2DA 4XI8A 3LETA 2VZAA 4U0UA 4WGJA 4ITRA 4U0SA 3CUCA 4PY3A 4NPSA 3S6AA 5EU0A 5CMTA 1NH1A 4LU4A 2VY3A 3SN9A 2JK8A 5JFZA 5JJ6A 5CKLA 2NUDA 4X2EA
chains in the Genus database with same CATH topology
2NUNA 1NH1A 2NUDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NUN A;  1NH1 A;  2NUD A; 
#chains in the Genus database with same CATH topology
 3SE5 A;  3ZCB A;  4U04 A;  4U07 A;  3ZLM A;  5CGL A;  2G03 A;  3N3U A;  4M16 A;  3ZC7 A;  2F6S A;  4X2C A;  5JJ7 A;  4U0Z A;  4N67 A;  5JFF A;  3SHG A;  2NUN A;  4X2D A;  4XI8 A;  3LET A;  2VZA A;  4U0U A;  4WGJ A;  4ITR A;  4U0S A;  3CUC A;  4PY3 A;  4NPS A;  3S6A A;  5EU0 A;  5CMT A;  1NH1 A;  4LU4 A;  2VY3 A;  3SN9 A;  2JK8 A;  5JFZ A;  5JJ6 A;  5CKL A;  2NUD A;  4X2E A; 
#chains in the Genus database with same CATH homology
 2NUN A;  1NH1 A;  2NUD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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