5CKLA

Fic protein from neisseria meningitidis (nmfic) mutant e156r in dimeric form
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
181
structure length
181
Chain Sequence
HMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLRLRFLLKDNLTDDVDNREIIFKGIEQSYYYEGYEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Intrinsic regulation of FIC-domain AMP-transferases by oligomerization and automodification.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup b (strain mc58)
molecule tags Transferase
molecule keywords Adenosine monophosphate-protein transferase NmFic
total genus 74
structure length 181
sequence length 181
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2015-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 5cklA00
5EU0A 4PY3A 3ZLMA 3N3UA 3CUCA 3ZCBA 4U0UA 3SE5A 4NPSA 4WGJA 5JFZA 2VZAA 4X2CA 4X2DA 5JFFA 4XI8A 2G03A 5JJ7A 3S6AA 5JJ6A 4U07A 4ITRA 2JK8A 3LETA 4U0ZA 4U04A 3SHGA 4X2EA 3SN9A 2F6SA 4U0SA 4M16A 5CKLA 2VY3A 4LU4A 3ZC7A 5CGLA 4N67A 5CMTA
chains in the Genus database with same CATH superfamily
5EU0A 4PY3A 3ZLMA 3N3UA 3CUCA 3ZCBA 4U0UA 3SE5A 4NPSA 4WGJA 5JFZA 2VZAA 4X2CA 4X2DA 5JFFA 4XI8A 2G03A 5JJ7A 3S6AA 5JJ6A 4U07A 4ITRA 2JK8A 3LETA 4U0ZA 4U04A 3SHGA 4X2EA 3SN9A 2F6SA 4U0SA 4M16A 5CKLA 2VY3A 4LU4A 1NH1A 3ZC7A 5CGLA 2NUNA 4N67A 2NUDA 5CMTA
chains in the Genus database with same CATH topology
5EU0A 4PY3A 3ZLMA 3N3UA 3CUCA 3ZCBA 4U0UA 3SE5A 4NPSA 4WGJA 5JFZA 2VZAA 4X2CA 4X2DA 5JFFA 4XI8A 2G03A 5JJ7A 3S6AA 5JJ6A 4U07A 4ITRA 2JK8A 3LETA 4U0ZA 4U04A 3SHGA 4X2EA 3SN9A 2F6SA 4U0SA 4M16A 5CKLA 2VY3A 4LU4A 3ZC7A 5CGLA 4N67A 5CMTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EU0 A;  4PY3 A;  3ZLM A;  3N3U A;  3CUC A;  3ZCB A;  4U0U A;  3SE5 A;  4NPS A;  4WGJ A;  5JFZ A;  2VZA A;  4X2C A;  4X2D A;  5JFF A;  4XI8 A;  2G03 A;  5JJ7 A;  3S6A A;  5JJ6 A;  4U07 A;  4ITR A;  2JK8 A;  3LET A;  4U0Z A;  4U04 A;  3SHG A;  4X2E A;  3SN9 A;  2F6S A;  4U0S A;  4M16 A;  5CKL A;  2VY3 A;  4LU4 A;  3ZC7 A;  5CGL A;  4N67 A;  5CMT A; 
#chains in the Genus database with same CATH topology
 5EU0 A;  4PY3 A;  3ZLM A;  3N3U A;  3CUC A;  3ZCB A;  4U0U A;  3SE5 A;  4NPS A;  4WGJ A;  5JFZ A;  2VZA A;  4X2C A;  4X2D A;  5JFF A;  4XI8 A;  2G03 A;  5JJ7 A;  3S6A A;  5JJ6 A;  4U07 A;  4ITR A;  2JK8 A;  3LET A;  4U0Z A;  4U04 A;  3SHG A;  4X2E A;  3SN9 A;  2F6S A;  4U0S A;  4M16 A;  5CKL A;  2VY3 A;  4LU4 A;  1NH1 A;  3ZC7 A;  5CGL A;  2NUN A;  4N67 A;  2NUD A;  5CMT A; 
#chains in the Genus database with same CATH homology
 5EU0 A;  4PY3 A;  3ZLM A;  3N3U A;  3CUC A;  3ZCB A;  4U0U A;  3SE5 A;  4NPS A;  4WGJ A;  5JFZ A;  2VZA A;  4X2C A;  4X2D A;  5JFF A;  4XI8 A;  2G03 A;  5JJ7 A;  3S6A A;  5JJ6 A;  4U07 A;  4ITR A;  2JK8 A;  3LET A;  4U0Z A;  4U04 A;  3SHG A;  4X2E A;  3SN9 A;  2F6S A;  4U0S A;  4M16 A;  5CKL A;  2VY3 A;  4LU4 A;  3ZC7 A;  5CGL A;  4N67 A;  5CMT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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