5CMTA

Fic protein from neisseria meningitidis (nmfic) mutant e156r y183f in dimeric form
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
180
structure length
180
Chain Sequence
HMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLRLRFLLKDNLTDDVDNREIIFKGIEQSFYYEGYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Intrinsic regulation of FIC-domain AMP-transferases by oligomerization and automodification.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup b
molecule tags Transferase
molecule keywords Adenosine monophosphate-protein transferase NmFic
total genus 72
structure length 180
sequence length 180
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2015-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 5cmtA00
3S6AA 5JFFA 2F6SA 4PY3A 5EU0A 4N67A 4U0ZA 4U0SA 3LETA 4U04A 3CUCA 4XI8A 5CGLA 2VY3A 4LU4A 4U0UA 4X2CA 3SHGA 3N3UA 2G03A 3SE5A 4X2EA 3SN9A 5CKLA 2VZAA 3ZC7A 4X2DA 5JFZA 4U07A 5JJ7A 2JK8A 5CMTA 4ITRA 4WGJA 3ZCBA 4NPSA 4M16A 5JJ6A 3ZLMA
chains in the Genus database with same CATH superfamily
3S6AA 5JFFA 2F6SA 4PY3A 5EU0A 1NH1A 4N67A 4U0ZA 4U0SA 3LETA 4U04A 2NUDA 3CUCA 4XI8A 5CGLA 2VY3A 4LU4A 4U0UA 4X2CA 3SHGA 3N3UA 2G03A 3SE5A 4X2EA 3SN9A 5CKLA 2VZAA 3ZC7A 4X2DA 5JFZA 4U07A 2NUNA 5JJ7A 2JK8A 5CMTA 4ITRA 4WGJA 3ZCBA 4NPSA 4M16A 5JJ6A 3ZLMA
chains in the Genus database with same CATH topology
3S6AA 5JFFA 2F6SA 4PY3A 5EU0A 4N67A 4U0ZA 4U0SA 3LETA 4U04A 3CUCA 4XI8A 5CGLA 2VY3A 4LU4A 4U0UA 4X2CA 3SHGA 3N3UA 2G03A 3SE5A 4X2EA 3SN9A 5CKLA 2VZAA 3ZC7A 4X2DA 5JFZA 4U07A 5JJ7A 2JK8A 5CMTA 4ITRA 4WGJA 3ZCBA 4NPSA 4M16A 5JJ6A 3ZLMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S6A A;  5JFF A;  2F6S A;  4PY3 A;  5EU0 A;  4N67 A;  4U0Z A;  4U0S A;  3LET A;  4U04 A;  3CUC A;  4XI8 A;  5CGL A;  2VY3 A;  4LU4 A;  4U0U A;  4X2C A;  3SHG A;  3N3U A;  2G03 A;  3SE5 A;  4X2E A;  3SN9 A;  5CKL A;  2VZA A;  3ZC7 A;  4X2D A;  5JFZ A;  4U07 A;  5JJ7 A;  2JK8 A;  5CMT A;  4ITR A;  4WGJ A;  3ZCB A;  4NPS A;  4M16 A;  5JJ6 A;  3ZLM A; 
#chains in the Genus database with same CATH topology
 3S6A A;  5JFF A;  2F6S A;  4PY3 A;  5EU0 A;  1NH1 A;  4N67 A;  4U0Z A;  4U0S A;  3LET A;  4U04 A;  2NUD A;  3CUC A;  4XI8 A;  5CGL A;  2VY3 A;  4LU4 A;  4U0U A;  4X2C A;  3SHG A;  3N3U A;  2G03 A;  3SE5 A;  4X2E A;  3SN9 A;  5CKL A;  2VZA A;  3ZC7 A;  4X2D A;  5JFZ A;  4U07 A;  2NUN A;  5JJ7 A;  2JK8 A;  5CMT A;  4ITR A;  4WGJ A;  3ZCB A;  4NPS A;  4M16 A;  5JJ6 A;  3ZLM A; 
#chains in the Genus database with same CATH homology
 3S6A A;  5JFF A;  2F6S A;  4PY3 A;  5EU0 A;  4N67 A;  4U0Z A;  4U0S A;  3LET A;  4U04 A;  3CUC A;  4XI8 A;  5CGL A;  2VY3 A;  4LU4 A;  4U0U A;  4X2C A;  3SHG A;  3N3U A;  2G03 A;  3SE5 A;  4X2E A;  3SN9 A;  5CKL A;  2VZA A;  3ZC7 A;  4X2D A;  5JFZ A;  4U07 A;  5JJ7 A;  2JK8 A;  5CMT A;  4ITR A;  4WGJ A;  3ZCB A;  4NPS A;  4M16 A;  5JJ6 A;  3ZLM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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