4LU4A

Crystal structure of the n-terminal fic domain of a putative cell filamentation protein (virb-translocated bep effector protein) from bartonella quintana
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
220
structure length
220
Chain Sequence
HHMEHNYFYKNSATLKNKHGIKNPRKLYERCAHETAREAVNFRLEPPPGKFDAAYLRTIHWCLFHNTFEWAGVTRDQPFTFEDGSTACMPAMRPKGYKVPFAVGSQIQRELKKLEQRLTAKNNLQGLSRQEFAANAAEVFTALDHAHPFRKGNGRTQRMFMEKLGQAAGYKIDFSLITKERMTYASIEAMQHNNPEPMKDLFEDITHPQKSLLLKEFISQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the N-terminal Fic Domain of a Putative Cell Filamentation protein (VirB-translocated Bep effector protein) from Bartonella quintana
rcsb
source organism Bartonella quintana
molecule tags Transferase
molecule keywords Putative cell filamentation protein
total genus 82
structure length 220
sequence length 220
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4lu4A00
4U07A 4U0SA 5JFFA 4LU4A 3S6AA 2VZAA 4ITRA 3CUCA 5CMTA 4X2EA 3SN9A 3N3UA 2JK8A 4WGJA 4U0ZA 2G03A 4NPSA 3SE5A 5JFZA 2VY3A 5EU0A 3ZLMA 5JJ7A 5CKLA 4X2DA 5CGLA 4PY3A 3ZC7A 4N67A 3ZCBA 4XI8A 4U04A 4M16A 2F6SA 3LETA 5JJ6A 3SHGA 4X2CA 4U0UA
chains in the Genus database with same CATH superfamily
4U07A 4U0SA 5JFFA 1NH1A 4LU4A 3S6AA 2VZAA 2NUDA 4ITRA 2NUNA 3CUCA 5CMTA 4X2EA 3SN9A 3N3UA 2JK8A 4WGJA 4U0ZA 2G03A 4NPSA 3SE5A 5JFZA 2VY3A 5EU0A 3ZLMA 5JJ7A 5CKLA 4X2DA 5CGLA 4PY3A 3ZC7A 4N67A 3ZCBA 4XI8A 4U04A 4M16A 2F6SA 3LETA 5JJ6A 3SHGA 4X2CA 4U0UA
chains in the Genus database with same CATH topology
4U07A 4U0SA 5JFFA 4LU4A 3S6AA 2VZAA 4ITRA 3CUCA 5CMTA 4X2EA 3SN9A 3N3UA 2JK8A 4WGJA 4U0ZA 2G03A 4NPSA 3SE5A 5JFZA 2VY3A 5EU0A 3ZLMA 5JJ7A 5CKLA 4X2DA 5CGLA 4PY3A 3ZC7A 4N67A 3ZCBA 4XI8A 4U04A 4M16A 2F6SA 3LETA 5JJ6A 3SHGA 4X2CA 4U0UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U07 A;  4U0S A;  5JFF A;  4LU4 A;  3S6A A;  2VZA A;  4ITR A;  3CUC A;  5CMT A;  4X2E A;  3SN9 A;  3N3U A;  2JK8 A;  4WGJ A;  4U0Z A;  2G03 A;  4NPS A;  3SE5 A;  5JFZ A;  2VY3 A;  5EU0 A;  3ZLM A;  5JJ7 A;  5CKL A;  4X2D A;  5CGL A;  4PY3 A;  3ZC7 A;  4N67 A;  3ZCB A;  4XI8 A;  4U04 A;  4M16 A;  2F6S A;  3LET A;  5JJ6 A;  3SHG A;  4X2C A;  4U0U A; 
#chains in the Genus database with same CATH topology
 4U07 A;  4U0S A;  5JFF A;  1NH1 A;  4LU4 A;  3S6A A;  2VZA A;  2NUD A;  4ITR A;  2NUN A;  3CUC A;  5CMT A;  4X2E A;  3SN9 A;  3N3U A;  2JK8 A;  4WGJ A;  4U0Z A;  2G03 A;  4NPS A;  3SE5 A;  5JFZ A;  2VY3 A;  5EU0 A;  3ZLM A;  5JJ7 A;  5CKL A;  4X2D A;  5CGL A;  4PY3 A;  3ZC7 A;  4N67 A;  3ZCB A;  4XI8 A;  4U04 A;  4M16 A;  2F6S A;  3LET A;  5JJ6 A;  3SHG A;  4X2C A;  4U0U A; 
#chains in the Genus database with same CATH homology
 4U07 A;  4U0S A;  5JFF A;  4LU4 A;  3S6A A;  2VZA A;  4ITR A;  3CUC A;  5CMT A;  4X2E A;  3SN9 A;  3N3U A;  2JK8 A;  4WGJ A;  4U0Z A;  2G03 A;  4NPS A;  3SE5 A;  5JFZ A;  2VY3 A;  5EU0 A;  3ZLM A;  5JJ7 A;  5CKL A;  4X2D A;  5CGL A;  4PY3 A;  3ZC7 A;  4N67 A;  3ZCB A;  4XI8 A;  4U04 A;  4M16 A;  2F6S A;  3LET A;  5JJ6 A;  3SHG A;  4X2C A;  4U0U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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