2NUNA

The structure of the type iii effector avrb complexed with adp
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
304
structure length
301
Chain Sequence
TSFNEASRTSFRALPGPSQRQLEVYDQCLIGAARWPDDSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLDSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction.
pubmed doi rcsb
source organism Pseudomonas syringae pv. glycinea
molecule tags Toxin/protein binding
molecule keywords Avirulence B protein
total genus 99
structure length 301
sequence length 304
ec nomenclature
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05394 AvrB_AvrC Avirulence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.20 Mainly Alpha Orthogonal Bundle Fic-like fold Fic-like fold 2nunA01
2NUDA 2NUNA 1NH1A
chains in the Genus database with same CATH superfamily
3N3UA 4X2CA 2F6SA 3ZCBA 4PY3A 4NPSA 4X2DA 3SE5A 3SHGA 3ZC7A 5JFZA 4U04A 2NUDA 3SN9A 4LU4A 5JFFA 4U0ZA 2G03A 3ZLMA 4X2EA 4XI8A 5JJ7A 1NH1A 4U0SA 3S6AA 4U07A 5CKLA 3CUCA 2VY3A 2VZAA 5CGLA 4U0UA 4WGJA 3LETA 4M16A 2JK8A 2NUNA 4ITRA 4N67A 5CMTA 5JJ6A 5EU0A
chains in the Genus database with same CATH topology
2NUDA 2NUNA 1NH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NUD A;  2NUN A;  1NH1 A; 
#chains in the Genus database with same CATH topology
 3N3U A;  4X2C A;  2F6S A;  3ZCB A;  4PY3 A;  4NPS A;  4X2D A;  3SE5 A;  3SHG A;  3ZC7 A;  5JFZ A;  4U04 A;  2NUD A;  3SN9 A;  4LU4 A;  5JFF A;  4U0Z A;  2G03 A;  3ZLM A;  4X2E A;  4XI8 A;  5JJ7 A;  1NH1 A;  4U0S A;  3S6A A;  4U07 A;  5CKL A;  3CUC A;  2VY3 A;  2VZA A;  5CGL A;  4U0U A;  4WGJ A;  3LET A;  4M16 A;  2JK8 A;  2NUN A;  4ITR A;  4N67 A;  5CMT A;  5JJ6 A;  5EU0 A; 
#chains in the Genus database with same CATH homology
 2NUD A;  2NUN A;  1NH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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