2A7OA

Solution structure of the hset2/hypb sri domain
Total Genus 38
1020304050607080900510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
100
structure length
100
Chain Sequence
TSSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVYKPKEDT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-34)AH2 (50-71)AH3 (82-97)TI1 (39-42)TIV1 (43-46)TI2 (97-100)3H1 (35-37)TVIII1 (42-45)EMPTY3H2 (75-77)Updating...
connected with : NaN
molecule tags Transcription
source organism Homo sapiens
publication title Solution structure of the Set2 Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1
pubmed doi rcsb
molecule keywords Huntingtin interacting protein B
total genus 38
structure length 100
sequence length 100
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2005-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08236 SRI SRI (Set2 Rpb1 interacting) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.100 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2a7oA00
2A7OA 2C5ZA
chains in the Genus database with same CATH superfamily
2QJ1A 4ZX5A 4Q4IA 2Y1EA 3CHPA 3CHRA 4XMUA 1X3ZA 4QPEA 3VVLA 4BKXA 4XNDA 4QMEA 2C5ZA 3FTWA 3FU0A 3ZHXA 3FUKA 1MW2A 4ZQHA 4MKTA 3CIAA 3T8VA 2VJ8A 5HLTA 4GAAA 4MS6A 3RC3A 3CZLA 1GW6A 1K5HA 1SC5A 4ZX6A 3FH8A 3B7RL 3FH7A 4ZW5A 3HW2A 1SQMA 1T1SA 4KP7A 2WPGA 3FUMA 3FU3A 4PVBA 2JV7A 3EBIA 3EBHA 3CZKA 3FUNA 3VVMA 2HPTA 1ZS2A 2DQMA 3QJXA 5JMPA 2XQ0A 2Y1CA 4JNDA 4OOEA 4XMTA 4L2LA 1Q0HA 3ANNA 1G5AA 2DQ6A 4DPRA 4XMVA 3B34A 5EV7A 5JO0A 3RC8A 3WQRA 1JVSA 1ONNA 5DLLA 4ZW3A 3CHOA 3B7UX 3FUIA 4ZQTA 1RP3A 4FCAA 1MW0A 4ZQEA 2C82A 3B7SA 2MAOA 3KEDA 3FTZA 2JD2A 4K5PA 4K5MA 4QIRA 2Y1GA 3B7TA 1H3LA 4XMWA 2R59A 3FUEA 3IIEA 3Q44A 4NQWA 4PU2A 4ZQFA 3RASA 3UCQA 1X3WA 2A7OA 1ONOA 1JG9A 5JNLA 1ONPA 5DULA 4QHPA 4R5XA 1R0LA 3FUFA 3FU5A 3UEQA 3Q43A 3A14A 1OR7A 4FLQA 4Q4EA 2JCYA 3PUUA 4ZX3A 4RCVA 4GAEA 4Y6PA 4R5TA 2EGHA 4XN4A 5AENA 5HNFA 4FLOA 2Y1FA 4XN1A 3B37A 3CZGA 4XN5A 4K5NA 3A06A 4K5LA 3CZEA 3FHEA 4XN2A 2WZGA 1H19A 4ZX4A 5HNHA 1MVYA 3FTUA 4K5OA 4XN7A 4XMZA 2PL5A 3FTVA 3U9WA 1S46A 4ZQGA 2RJIA 3JT1A 1MW1A 2QVWA 1T1RA 2B61A 2GTQA 3AU8A 3B2XA 4AR9A 5JBIA 5JMWA 4LUPA 2WZFA 4RSYA 4AR1A 5JAZA 3AU9A 4PW4A 4ZW7A 3JSZA 1SG7A 1Q0QA 4CXFA 3CHSA 4ARFA 3FULA 4RVBA 2XPYA 1R0KA 2Y1DA 5DYFA 3UERA 5JC1A 4Y6RA 2MAPA 4AICA 2JCXA 3FUJA 4XNAA 4OOFA 4QUOA 4XO4A 4ZW8A 3WQSB 3ANLA 4XN8A 3ZHYA 2R70A 3ZI0A 2JD1A 2PGGA 2R72A 1HS6A 2ZXGA 3B2PA 3EBGA 3AUAA 3FTSA 3FU6A 4XMXA 2HPOA 4ZN6A 1MW3A 2FFLA 2XPZA 3B3BA 4X2UA 3FTXA 5BPPA 1JGIA 4J3BA 4Y6SA 4XN9A 3CHQA 3T0YA 4FLRA 5FWQA 2O7GA 2JCVA 4R7LA 4R5VA 3ANMA 3FUHA 4XO5A 4A03A 2PUSA 1Q0LA 3FH5A 3CXBA 3FUDA 2JD0A 3R0IA 4XNBA 4Y67A 3WQQA 3ZHZA 4AR8A 2VLAA 4FLSA 3FTYA 4XO3A 4ZW6A 4AYSA
chains in the Genus database with same CATH topology
2QJ1A 4ZX5A 4Q4IA 2Y1EA 3CHPA 3CHRA 4XMUA 1X3ZA 4QPEA 3VVLA 4BKXA 4XNDA 4QMEA 2C5ZA 3FTWA 3FU0A 3ZHXA 3FUKA 1MW2A 4ZQHA 4MKTA 3CIAA 3T8VA 2VJ8A 5HLTA 4GAAA 4MS6A 3RC3A 3CZLA 1GW6A 1K5HA 1SC5A 4ZX6A 3FH8A 3B7RL 3FH7A 4ZW5A 1SQMA 1T1SA 4KP7A 2WPGA 3FUMA 3FU3A 4PVBA 2JV7A 3EBIA 3EBHA 3CZKA 3FUNA 3VVMA 2HPTA 1ZS2A 2DQMA 3QJXA 5JMPA 2XQ0A 2Y1CA 4JNDA 4OOEA 4XMTA 4L2LA 1Q0HA 3ANNA 1G5AA 2DQ6A 4DPRA 4XMVA 3B34A 5EV7A 5JO0A 3RC8A 3WQRA 1JVSA 1ONNA 5DLLA 4ZW3A 3CHOA 3B7UX 3FUIA 4ZQTA 1RP3A 4FCAA 1MW0A 4ZQEA 2C82A 3B7SA 2MAOA 3KEDA 3FTZA 2JD2A 4K5PA 4K5MA 4QIRA 2Y1GA 3B7TA 1H3LA 4XMWA 2R59A 3FUEA 3IIEA 3Q44A 4NQWA 4PU2A 4ZQFA 3RASA 3UCQA 1X3WA 2A7OA 1ONOA 1JG9A 5JNLA 1ONPA 5DULA 4QHPA 4R5XA 1R0LA 3FUFA 3FU5A 3UEQA 3Q43A 3A14A 1OR7A 4FLQA 4Q4EA 2JCYA 3PUUA 4ZX3A 4RCVA 4GAEA 4Y6PA 4R5TA 2EGHA 4XN4A 5AENA 5HNFA 4FLOA 2Y1FA 4XN1A 3B37A 3CZGA 4XN5A 4K5NA 3A06A 4K5LA 3CZEA 3FHEA 4XN2A 2WZGA 1H19A 4ZX4A 5HNHA 1MVYA 3FTUA 4K5OA 4XN7A 4XMZA 2PL5A 3FTVA 3U9WA 1S46A 4ZQGA 2RJIA 3JT1A 1MW1A 2QVWA 1T1RA 2B61A 2GTQA 3AU8A 3B2XA 5JMWA 5JBIA 4LUPA 2WZFA 4RSYA 4AR1A 5JAZA 3AU9A 4PW4A 4ZW7A 3JSZA 1SG7A 1Q0QA 4CXFA 3CHSA 4ARFA 3FULA 4RVBA 2XPYA 1R0KA 2Y1DA 5DYFA 3UERA 5JC1A 4Y6RA 2MAPA 4AICA 2JCXA 3FUJA 4XNAA 4OOFA 4QUOA 4XO4A 4ZW8A 3WQSB 3ANLA 4XN8A 3ZHYA 2R70A 3ZI0A 2JD1A 2PGGA 2R72A 1HS6A 2ZXGA 3B2PA 3EBGA 3AUAA 3FTSA 3FU6A 4XMXA 2HPOA 4ZN6A 1MW3A 2FFLA 2XPZA 3B3BA 4X2UA 3FTXA 5BPPA 1JGIA 4J3BA 4Y6SA 4XN9A 3CHQA 3T0YA 4FLRA 5FWQA 2O7GA 2JCVA 4R7LA 4R5VA 3ANMA 3FUHA 4XO5A 4A03A 2PUSA 1Q0LA 3FH5A 4XNBA 3FUDA 2JD0A 3R0IA 3WQQA 4Y67A 3ZHZA 4AR9A 4AR8A 2VLAA 4FLSA 3FTYA 4XO3A 4ZW6A 4AYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A7O A;  2C5Z A; 
#chains in the Genus database with same CATH topology
 2QJ1 A;  4ZX5 A;  4Q4I A;  2Y1E A;  3CHP A;  3CHR A;  4XMU A;  1X3Z A;  4QPE A;  3VVL A;  4BKX A;  4XND A;  4QME A;  2C5Z A;  3FTW A;  3FU0 A;  3ZHX A;  3FUK A;  1MW2 A;  4ZQH A;  4MKT A;  3CIA A;  3T8V A;  2VJ8 A;  5HLT A;  4GAA A;  4MS6 A;  3RC3 A;  3CZL A;  1GW6 A;  1K5H A;  1SC5 A;  4ZX6 A;  3FH8 A;  3B7R L;  3FH7 A;  4ZW5 A;  3HW2 A;  1SQM A;  1T1S A;  4KP7 A;  2WPG A;  3FUM A;  3FU3 A;  4PVB A;  2JV7 A;  3EBI A;  3EBH A;  3CZK A;  3FUN A;  3VVM A;  2HPT A;  1ZS2 A;  2DQM A;  3QJX A;  5JMP A;  2XQ0 A;  2Y1C A;  4JND A;  4OOE A;  4XMT A;  4L2L A;  1Q0H A;  3ANN A;  1G5A A;  2DQ6 A;  4DPR A;  4XMV A;  3B34 A;  5EV7 A;  5JO0 A;  3RC8 A;  3WQR A;  1JVS A;  1ONN A;  5DLL A;  4ZW3 A;  3CHO A;  3B7U X;  3FUI A;  4ZQT A;  1RP3 A;  4FCA A;  1MW0 A;  4ZQE A;  2C82 A;  3B7S A;  2MAO A;  3KED A;  3FTZ A;  2JD2 A;  4K5P A;  4K5M A;  4QIR A;  2Y1G A;  3B7T A;  1H3L A;  4XMW A;  2R59 A;  3FUE A;  3IIE A;  3Q44 A;  4NQW A;  4PU2 A;  4ZQF A;  3RAS A;  3UCQ A;  1X3W A;  2A7O A;  1ONO A;  1JG9 A;  5JNL A;  1ONP A;  5DUL A;  4QHP A;  4R5X A;  1R0L A;  3FUF A;  3FU5 A;  3UEQ A;  3Q43 A;  3A14 A;  1OR7 A;  4FLQ A;  4Q4E A;  2JCY A;  3PUU A;  4ZX3 A;  4RCV A;  4GAE A;  4Y6P A;  4R5T A;  2EGH A;  4XN4 A;  5AEN A;  5HNF A;  4FLO A;  2Y1F A;  4XN1 A;  3B37 A;  3CZG A;  4XN5 A;  4K5N A;  3A06 A;  4K5L A;  3CZE A;  3FHE A;  4XN2 A;  2WZG A;  1H19 A;  4ZX4 A;  5HNH A;  1MVY A;  3FTU A;  4K5O A;  4XN7 A;  4XMZ A;  2PL5 A;  3FTV A;  3U9W A;  1S46 A;  4ZQG A;  2RJI A;  3JT1 A;  1MW1 A;  2QVW A;  1T1R A;  2B61 A;  2GTQ A;  3AU8 A;  3B2X A;  4AR9 A;  5JBI A;  5JMW A;  4LUP A;  2WZF A;  4RSY A;  4AR1 A;  5JAZ A;  3AU9 A;  4PW4 A;  4ZW7 A;  3JSZ A;  1SG7 A;  1Q0Q A;  4CXF A;  3CHS A;  4ARF A;  3FUL A;  4RVB A;  2XPY A;  1R0K A;  2Y1D A;  5DYF A;  3UER A;  5JC1 A;  4Y6R A;  2MAP A;  4AIC A;  2JCX A;  3FUJ A;  4XNA A;  4OOF A;  4QUO A;  4XO4 A;  4ZW8 A;  3WQS B;  3ANL A;  4XN8 A;  3ZHY A;  2R70 A;  3ZI0 A;  2JD1 A;  2PGG A;  2R72 A;  1HS6 A;  2ZXG A;  3B2P A;  3EBG A;  3AUA A;  3FTS A;  3FU6 A;  4XMX A;  2HPO A;  4ZN6 A;  1MW3 A;  2FFL A;  2XPZ A;  3B3B A;  4X2U A;  3FTX A;  5BPP A;  1JGI A;  4J3B A;  4Y6S A;  4XN9 A;  3CHQ A;  3T0Y A;  4FLR A;  5FWQ A;  2O7G A;  2JCV A;  4R7L A;  4R5V A;  3ANM A;  3FUH A;  4XO5 A;  4A03 A;  2PUS A;  1Q0L A;  3FH5 A;  3CXB A;  3FUD A;  2JD0 A;  3R0I A;  4XNB A;  4Y67 A;  3WQQ A;  3ZHZ A;  4AR8 A;  2VLA A;  4FLS A;  3FTY A;  4XO3 A;  4ZW6 A;  4AYS A; 
#chains in the Genus database with same CATH homology
 2QJ1 A;  4ZX5 A;  4Q4I A;  2Y1E A;  3CHP A;  3CHR A;  4XMU A;  1X3Z A;  4QPE A;  3VVL A;  4BKX A;  4XND A;  4QME A;  2C5Z A;  3FTW A;  3FU0 A;  3ZHX A;  3FUK A;  1MW2 A;  4ZQH A;  4MKT A;  3CIA A;  3T8V A;  2VJ8 A;  5HLT A;  4GAA A;  4MS6 A;  3RC3 A;  3CZL A;  1GW6 A;  1K5H A;  1SC5 A;  4ZX6 A;  3FH8 A;  3B7R L;  3FH7 A;  4ZW5 A;  1SQM A;  1T1S A;  4KP7 A;  2WPG A;  3FUM A;  3FU3 A;  4PVB A;  2JV7 A;  3EBI A;  3EBH A;  3CZK A;  3FUN A;  3VVM A;  2HPT A;  1ZS2 A;  2DQM A;  3QJX A;  5JMP A;  2XQ0 A;  2Y1C A;  4JND A;  4OOE A;  4XMT A;  4L2L A;  1Q0H A;  3ANN A;  1G5A A;  2DQ6 A;  4DPR A;  4XMV A;  3B34 A;  5EV7 A;  5JO0 A;  3RC8 A;  3WQR A;  1JVS A;  1ONN A;  5DLL A;  4ZW3 A;  3CHO A;  3B7U X;  3FUI A;  4ZQT A;  1RP3 A;  4FCA A;  1MW0 A;  4ZQE A;  2C82 A;  3B7S A;  2MAO A;  3KED A;  3FTZ A;  2JD2 A;  4K5P A;  4K5M A;  4QIR A;  2Y1G A;  3B7T A;  1H3L A;  4XMW A;  2R59 A;  3FUE A;  3IIE A;  3Q44 A;  4NQW A;  4PU2 A;  4ZQF A;  3RAS A;  3UCQ A;  1X3W A;  2A7O A;  1ONO A;  1JG9 A;  5JNL A;  1ONP A;  5DUL A;  4QHP A;  4R5X A;  1R0L A;  3FUF A;  3FU5 A;  3UEQ A;  3Q43 A;  3A14 A;  1OR7 A;  4FLQ A;  4Q4E A;  2JCY A;  3PUU A;  4ZX3 A;  4RCV A;  4GAE A;  4Y6P A;  4R5T A;  2EGH A;  4XN4 A;  5AEN A;  5HNF A;  4FLO A;  2Y1F A;  4XN1 A;  3B37 A;  3CZG A;  4XN5 A;  4K5N A;  3A06 A;  4K5L A;  3CZE A;  3FHE A;  4XN2 A;  2WZG A;  1H19 A;  4ZX4 A;  5HNH A;  1MVY A;  3FTU A;  4K5O A;  4XN7 A;  4XMZ A;  2PL5 A;  3FTV A;  3U9W A;  1S46 A;  4ZQG A;  2RJI A;  3JT1 A;  1MW1 A;  2QVW A;  1T1R A;  2B61 A;  2GTQ A;  3AU8 A;  3B2X A;  5JMW A;  5JBI A;  4LUP A;  2WZF A;  4RSY A;  4AR1 A;  5JAZ A;  3AU9 A;  4PW4 A;  4ZW7 A;  3JSZ A;  1SG7 A;  1Q0Q A;  4CXF A;  3CHS A;  4ARF A;  3FUL A;  4RVB A;  2XPY A;  1R0K A;  2Y1D A;  5DYF A;  3UER A;  5JC1 A;  4Y6R A;  2MAP A;  4AIC A;  2JCX A;  3FUJ A;  4XNA A;  4OOF A;  4QUO A;  4XO4 A;  4ZW8 A;  3WQS B;  3ANL A;  4XN8 A;  3ZHY A;  2R70 A;  3ZI0 A;  2JD1 A;  2PGG A;  2R72 A;  1HS6 A;  2ZXG A;  3B2P A;  3EBG A;  3AUA A;  3FTS A;  3FU6 A;  4XMX A;  2HPO A;  4ZN6 A;  1MW3 A;  2FFL A;  2XPZ A;  3B3B A;  4X2U A;  3FTX A;  5BPP A;  1JGI A;  4J3B A;  4Y6S A;  4XN9 A;  3CHQ A;  3T0Y A;  4FLR A;  5FWQ A;  2O7G A;  2JCV A;  4R7L A;  4R5V A;  3ANM A;  3FUH A;  4XO5 A;  4A03 A;  2PUS A;  1Q0L A;  3FH5 A;  4XNB A;  3FUD A;  2JD0 A;  3R0I A;  3WQQ A;  4Y67 A;  3ZHZ A;  4AR9 A;  4AR8 A;  2VLA A;  4FLS A;  3FTY A;  4XO3 A;  4ZW6 A;  4AYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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