2C5ZA

Structure and ctd binding of the set2 sri domain
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
93
structure length
93
Chain Sequence
VSQSQRLEHNWNKFFASFVPNLIKKNPQSKQFDHENIKQCAKDIVKILTTKELKKDSSRAPPDDLTKGKRHKVKEFINSYMDKIILKKKQKKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.
pubmed doi rcsb
molecule keywords SET DOMAIN PROTEIN 2
total genus 35
structure length 93
sequence length 93
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2005-11-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08236 SRI SRI (Set2 Rpb1 interacting) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.100 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2c5zA00
2C5ZA 2A7OA
chains in the Genus database with same CATH superfamily
2JCYA 3KEDA 3AU8A 5EV7A 2FFLA 4RSYA 1K5HA 1MW3A 4ZX4A 2EGHA 3CXBA 4GAAA 2Y1EA 1Q0QA 1ONPA 4GAEA 4JNDA 3U9WA 3EBGA 1H19A 4ZX5A 3ANMA 4ZQGA 2RJIA 3FUJA 4XO5A 2JV7A 4A03A 3JSZA 5FWQA 4OOEA 3FUEA 3FUKA 4RVBA 3FUNA 4K5LA 4XO3A 1S46A 3CHPA 2ZXGA 4XNBA 1MW2A 3FU3A 4K5PA 2VJ8A 3B7SA 3UEQA 1T1RA 3ZHYA 3FUMA 3UERA 3FTZA 4QUOA 2PGGA 3UCQA 4XO4A 3RASA 4XN1A 4ZW5A 3JT1A 1ZS2A 3FU5A 2HPTA 4CXFA 4R5XA 3B3BA 4OOFA 2HPOA 1H3LA 2DQ6A 2JCVA 3AUAA 4R7LA 5JMWA 2QVWA 3QJXA 5JBIA 1MW1A 4RCVA 3FH7A 4R5VA 3RC3A 3FTVA 3ANNA 3B34A 4XNDA 2JD0A 2O7GA 3CHSA 3IIEA 3T0YA 1OR7A 3FULA 4ZX3A 4X2UA 3T8VA 4XN4A 1X3WA 4MKTA 3Q43A 1JVSA 4XN8A 4FLRA 3FUDA 1RP3A 4XN7A 1R0LA 4FCAA 2A7OA 2GTQA 1MVYA 4PW4A 2WZGA 4QHPA 4XMWA 2XPZA 4XN9A 3ZHXA 4AYSA 5BPPA 3R0IA 4K5OA 3ANLA 1Q0LA 3AU9A 4DPRA 4XMZA 3FUHA 4AR9A 4QMEA 5JAZA 3PUUA 3FHEA 2QJ1A 3B2XA 3B37A 3RC8A 1HS6A 3Q44A 4QIRA 3WQSB 4PVBA 4XMUA 2Y1CA 5HNHA 2Y1DA 2B61A 4ZW3A 1X3ZA 3B7TA 3CZLA 4ZQFA 1G5AA 2WZFA 4ZW6A 4ZX6A 2MAPA 3B2PA 1Q0HA 4MS6A 5DLLA 2XQ0A 4AICA 5HLTA 4AR1A 4KP7A 1ONOA 1SQMA 3EBIA 4L2LA 4QPEA 4Y67A 3A14A 4NQWA 3ZI0A 4ZQTA 3FTYA 4R5TA 5AENA 3CIAA 3FH8A 4LUPA 4ARFA 2R72A 2MAOA 4XN2A 5JC1A 1GW6A 2JCXA 4FLSA 5JNLA 3FTXA 4FLOA 4J3BA 2PL5A 1SG7A 4Y6SA 3FTWA 5JMPA 4AR8A 4XMTA 1JG9A 4ZQHA 3EBHA 3CHRA 3FU6A 4XN5A 4XMXA 1MW0A 3A06A 3WQRA 3FUIA 2PUSA 1ONNA 1SC5A 2C82A 2XPYA 4ZW7A 3FTUA 2R70A 2JD1A 2R59A 2Y1FA 3WQQA 5DYFA 3ZHZA 3FUFA 5HNFA 4ZW8A 4XNAA 2WPGA 3FTSA 4BKXA 3CZGA 4PU2A 1T1SA 3CHQA 5JO0A 4Y6PA 2VLAA 3VVMA 2C5ZA 2JD2A 3CHOA 3B7UX 3FU0A 4K5MA 4ZQEA 4FLQA 3VVLA 3FH5A 4Q4IA 2Y1GA 3B7RL 4XMVA 4ZN6A 4K5NA 1R0KA 4Q4EA 3CZEA 4Y6RA 5DULA 3HW2A 3CZKA 2DQMA 1JGIA
chains in the Genus database with same CATH topology
2JCYA 3KEDA 3AU8A 5EV7A 2FFLA 4RSYA 1K5HA 1MW3A 4ZX4A 2EGHA 4GAAA 2Y1EA 1Q0QA 1ONPA 4GAEA 4JNDA 3U9WA 3EBGA 1H19A 4ZX5A 3ANMA 4ZQGA 2RJIA 3FUJA 4XO5A 2JV7A 4A03A 3JSZA 5FWQA 4OOEA 3FUEA 3FUKA 4RVBA 3FUNA 4K5LA 4XO3A 1S46A 3CHPA 2ZXGA 4XNBA 1MW2A 3FU3A 4K5PA 2VJ8A 3B7SA 3UEQA 1T1RA 3ZHYA 3FUMA 3UERA 3FTZA 4QUOA 2PGGA 3UCQA 4XO4A 3RASA 4XN1A 4ZW5A 3JT1A 1ZS2A 3FU5A 2HPTA 4CXFA 4R5XA 3B3BA 4OOFA 2HPOA 1H3LA 2DQ6A 2JCVA 3AUAA 4R7LA 5JMWA 2QVWA 3QJXA 5JBIA 1MW1A 4RCVA 3FH7A 4R5VA 3RC3A 3FTVA 3ANNA 3B34A 4XNDA 2JD0A 2O7GA 3CHSA 3IIEA 3T0YA 1OR7A 3FULA 4ZX3A 4X2UA 3T8VA 4XN4A 1X3WA 4MKTA 3Q43A 1JVSA 4XN8A 4FLRA 3FUDA 1RP3A 4XN7A 1R0LA 4FCAA 2A7OA 2GTQA 1MVYA 4PW4A 2WZGA 4QHPA 4XMWA 2XPZA 4XN9A 3ZHXA 4AYSA 5BPPA 3R0IA 4K5OA 3ANLA 1Q0LA 3AU9A 4DPRA 4XMZA 3FUHA 4AR9A 4QMEA 5JAZA 3PUUA 3FHEA 2QJ1A 3B2XA 3B37A 3RC8A 1HS6A 3Q44A 4QIRA 3WQSB 4PVBA 4XMUA 2Y1CA 5HNHA 2Y1DA 2B61A 4ZW3A 1X3ZA 3B7TA 3CZLA 4ZQFA 1G5AA 2WZFA 4ZW6A 4ZX6A 2MAPA 3B2PA 1Q0HA 4MS6A 5DLLA 2XQ0A 4AICA 5HLTA 4AR1A 4KP7A 1ONOA 1SQMA 3EBIA 4L2LA 4QPEA 4Y67A 3A14A 4NQWA 3ZI0A 4ZQTA 3FTYA 4R5TA 5AENA 3CIAA 3FH8A 4LUPA 4ARFA 2R72A 2MAOA 4XN2A 5JC1A 1GW6A 2JCXA 4FLSA 5JNLA 3FTXA 4FLOA 4J3BA 2PL5A 1SG7A 4Y6SA 3FTWA 5JMPA 4AR8A 4XMTA 1JG9A 4ZQHA 3EBHA 3CHRA 3FU6A 4XN5A 4XMXA 1MW0A 3A06A 3WQRA 3FUIA 2PUSA 1ONNA 1SC5A 2C82A 2XPYA 4ZW7A 3FTUA 2R70A 2JD1A 2R59A 2Y1FA 3WQQA 5DYFA 3ZHZA 3FUFA 5HNFA 4ZW8A 4XNAA 2WPGA 3FTSA 4BKXA 3CZGA 4PU2A 1T1SA 3CHQA 5JO0A 4Y6PA 2VLAA 3VVMA 2C5ZA 2JD2A 3CHOA 3B7UX 3FU0A 4K5MA 4ZQEA 4FLQA 3VVLA 3FH5A 4Q4IA 2Y1GA 3B7RL 4XMVA 4ZN6A 4K5NA 1R0KA 4Q4EA 3CZEA 4Y6RA 5DULA 3CZKA 2DQMA 1JGIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C5Z A;  2A7O A; 
#chains in the Genus database with same CATH topology
 2JCY A;  3KED A;  3AU8 A;  5EV7 A;  2FFL A;  4RSY A;  1K5H A;  1MW3 A;  4ZX4 A;  2EGH A;  3CXB A;  4GAA A;  2Y1E A;  1Q0Q A;  1ONP A;  4GAE A;  4JND A;  3U9W A;  3EBG A;  1H19 A;  4ZX5 A;  3ANM A;  4ZQG A;  2RJI A;  3FUJ A;  4XO5 A;  2JV7 A;  4A03 A;  3JSZ A;  5FWQ A;  4OOE A;  3FUE A;  3FUK A;  4RVB A;  3FUN A;  4K5L A;  4XO3 A;  1S46 A;  3CHP A;  2ZXG A;  4XNB A;  1MW2 A;  3FU3 A;  4K5P A;  2VJ8 A;  3B7S A;  3UEQ A;  1T1R A;  3ZHY A;  3FUM A;  3UER A;  3FTZ A;  4QUO A;  2PGG A;  3UCQ A;  4XO4 A;  3RAS A;  4XN1 A;  4ZW5 A;  3JT1 A;  1ZS2 A;  3FU5 A;  2HPT A;  4CXF A;  4R5X A;  3B3B A;  4OOF A;  2HPO A;  1H3L A;  2DQ6 A;  2JCV A;  3AUA A;  4R7L A;  5JMW A;  2QVW A;  3QJX A;  5JBI A;  1MW1 A;  4RCV A;  3FH7 A;  4R5V A;  3RC3 A;  3FTV A;  3ANN A;  3B34 A;  4XND A;  2JD0 A;  2O7G A;  3CHS A;  3IIE A;  3T0Y A;  1OR7 A;  3FUL A;  4ZX3 A;  4X2U A;  3T8V A;  4XN4 A;  1X3W A;  4MKT A;  3Q43 A;  1JVS A;  4XN8 A;  4FLR A;  3FUD A;  1RP3 A;  4XN7 A;  1R0L A;  4FCA A;  2A7O A;  2GTQ A;  1MVY A;  4PW4 A;  2WZG A;  4QHP A;  4XMW A;  2XPZ A;  4XN9 A;  3ZHX A;  4AYS A;  5BPP A;  3R0I A;  4K5O A;  3ANL A;  1Q0L A;  3AU9 A;  4DPR A;  4XMZ A;  3FUH A;  4AR9 A;  4QME A;  5JAZ A;  3PUU A;  3FHE A;  2QJ1 A;  3B2X A;  3B37 A;  3RC8 A;  1HS6 A;  3Q44 A;  4QIR A;  3WQS B;  4PVB A;  4XMU A;  2Y1C A;  5HNH A;  2Y1D A;  2B61 A;  4ZW3 A;  1X3Z A;  3B7T A;  3CZL A;  4ZQF A;  1G5A A;  2WZF A;  4ZW6 A;  4ZX6 A;  2MAP A;  3B2P A;  1Q0H A;  4MS6 A;  5DLL A;  2XQ0 A;  4AIC A;  5HLT A;  4AR1 A;  4KP7 A;  1ONO A;  1SQM A;  3EBI A;  4L2L A;  4QPE A;  4Y67 A;  3A14 A;  4NQW A;  3ZI0 A;  4ZQT A;  3FTY A;  4R5T A;  5AEN A;  3CIA A;  3FH8 A;  4LUP A;  4ARF A;  2R72 A;  2MAO A;  4XN2 A;  5JC1 A;  1GW6 A;  2JCX A;  4FLS A;  5JNL A;  3FTX A;  4FLO A;  4J3B A;  2PL5 A;  1SG7 A;  4Y6S A;  3FTW A;  5JMP A;  4AR8 A;  4XMT A;  1JG9 A;  4ZQH A;  3EBH A;  3CHR A;  3FU6 A;  4XN5 A;  4XMX A;  1MW0 A;  3A06 A;  3WQR A;  3FUI A;  2PUS A;  1ONN A;  1SC5 A;  2C82 A;  2XPY A;  4ZW7 A;  3FTU A;  2R70 A;  2JD1 A;  2R59 A;  2Y1F A;  3WQQ A;  5DYF A;  3ZHZ A;  3FUF A;  5HNF A;  4ZW8 A;  4XNA A;  2WPG A;  3FTS A;  4BKX A;  3CZG A;  4PU2 A;  1T1S A;  3CHQ A;  5JO0 A;  4Y6P A;  2VLA A;  3VVM A;  2C5Z A;  2JD2 A;  3CHO A;  3B7U X;  3FU0 A;  4K5M A;  4ZQE A;  4FLQ A;  3VVL A;  3FH5 A;  4Q4I A;  2Y1G A;  3B7R L;  4XMV A;  4ZN6 A;  4K5N A;  1R0K A;  4Q4E A;  3CZE A;  4Y6R A;  5DUL A;  3HW2 A;  3CZK A;  2DQM A;  1JGI A; 
#chains in the Genus database with same CATH homology
 2JCY A;  3KED A;  3AU8 A;  5EV7 A;  2FFL A;  4RSY A;  1K5H A;  1MW3 A;  4ZX4 A;  2EGH A;  4GAA A;  2Y1E A;  1Q0Q A;  1ONP A;  4GAE A;  4JND A;  3U9W A;  3EBG A;  1H19 A;  4ZX5 A;  3ANM A;  4ZQG A;  2RJI A;  3FUJ A;  4XO5 A;  2JV7 A;  4A03 A;  3JSZ A;  5FWQ A;  4OOE A;  3FUE A;  3FUK A;  4RVB A;  3FUN A;  4K5L A;  4XO3 A;  1S46 A;  3CHP A;  2ZXG A;  4XNB A;  1MW2 A;  3FU3 A;  4K5P A;  2VJ8 A;  3B7S A;  3UEQ A;  1T1R A;  3ZHY A;  3FUM A;  3UER A;  3FTZ A;  4QUO A;  2PGG A;  3UCQ A;  4XO4 A;  3RAS A;  4XN1 A;  4ZW5 A;  3JT1 A;  1ZS2 A;  3FU5 A;  2HPT A;  4CXF A;  4R5X A;  3B3B A;  4OOF A;  2HPO A;  1H3L A;  2DQ6 A;  2JCV A;  3AUA A;  4R7L A;  5JMW A;  2QVW A;  3QJX A;  5JBI A;  1MW1 A;  4RCV A;  3FH7 A;  4R5V A;  3RC3 A;  3FTV A;  3ANN A;  3B34 A;  4XND A;  2JD0 A;  2O7G A;  3CHS A;  3IIE A;  3T0Y A;  1OR7 A;  3FUL A;  4ZX3 A;  4X2U A;  3T8V A;  4XN4 A;  1X3W A;  4MKT A;  3Q43 A;  1JVS A;  4XN8 A;  4FLR A;  3FUD A;  1RP3 A;  4XN7 A;  1R0L A;  4FCA A;  2A7O A;  2GTQ A;  1MVY A;  4PW4 A;  2WZG A;  4QHP A;  4XMW A;  2XPZ A;  4XN9 A;  3ZHX A;  4AYS A;  5BPP A;  3R0I A;  4K5O A;  3ANL A;  1Q0L A;  3AU9 A;  4DPR A;  4XMZ A;  3FUH A;  4AR9 A;  4QME A;  5JAZ A;  3PUU A;  3FHE A;  2QJ1 A;  3B2X A;  3B37 A;  3RC8 A;  1HS6 A;  3Q44 A;  4QIR A;  3WQS B;  4PVB A;  4XMU A;  2Y1C A;  5HNH A;  2Y1D A;  2B61 A;  4ZW3 A;  1X3Z A;  3B7T A;  3CZL A;  4ZQF A;  1G5A A;  2WZF A;  4ZW6 A;  4ZX6 A;  2MAP A;  3B2P A;  1Q0H A;  4MS6 A;  5DLL A;  2XQ0 A;  4AIC A;  5HLT A;  4AR1 A;  4KP7 A;  1ONO A;  1SQM A;  3EBI A;  4L2L A;  4QPE A;  4Y67 A;  3A14 A;  4NQW A;  3ZI0 A;  4ZQT A;  3FTY A;  4R5T A;  5AEN A;  3CIA A;  3FH8 A;  4LUP A;  4ARF A;  2R72 A;  2MAO A;  4XN2 A;  5JC1 A;  1GW6 A;  2JCX A;  4FLS A;  5JNL A;  3FTX A;  4FLO A;  4J3B A;  2PL5 A;  1SG7 A;  4Y6S A;  3FTW A;  5JMP A;  4AR8 A;  4XMT A;  1JG9 A;  4ZQH A;  3EBH A;  3CHR A;  3FU6 A;  4XN5 A;  4XMX A;  1MW0 A;  3A06 A;  3WQR A;  3FUI A;  2PUS A;  1ONN A;  1SC5 A;  2C82 A;  2XPY A;  4ZW7 A;  3FTU A;  2R70 A;  2JD1 A;  2R59 A;  2Y1F A;  3WQQ A;  5DYF A;  3ZHZ A;  3FUF A;  5HNF A;  4ZW8 A;  4XNA A;  2WPG A;  3FTS A;  4BKX A;  3CZG A;  4PU2 A;  1T1S A;  3CHQ A;  5JO0 A;  4Y6P A;  2VLA A;  3VVM A;  2C5Z A;  2JD2 A;  3CHO A;  3B7U X;  3FU0 A;  4K5M A;  4ZQE A;  4FLQ A;  3VVL A;  3FH5 A;  4Q4I A;  2Y1G A;  3B7R L;  4XMV A;  4ZN6 A;  4K5N A;  1R0K A;  4Q4E A;  3CZE A;  4Y6R A;  5DUL A;  3CZK A;  2DQM A;  1JGI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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