The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
35
|
sequence length |
93
|
structure length |
93
|
Chain Sequence |
VSQSQRLEHNWNKFFASFVPNLIKKNPQSKQFDHENIKQCAKDIVKILTTKELKKDSSRAPPDDLTKGKRHKVKEFINSYMDKIILKKKQKKA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription.
pubmed doi rcsb |
| molecule tags |
Transcription
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
SET DOMAIN PROTEIN 2
|
| total genus |
35
|
| structure length |
93
|
| sequence length |
93
|
| ec nomenclature |
ec
2.1.1.43: Histone-lysine N-methyltransferase. |
| pdb deposition date | 2005-11-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08236 | SRI | SRI (Set2 Rpb1 interacting) domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Rna Polymerase Sigma Factor; Chain: A | Rna Polymerase Sigma Factor; Chain: A |
#chains in the Genus database with same CATH superfamily 2A7O A; 2C5Z A; #chains in the Genus database with same CATH topology 3T0Y A; 2XQ0 A; 2JCX A; 2PL5 A; 3ANN A; 4MS6 A; 2R72 A; 4FLQ A; 4XN7 A; 1H3L A; 4XMW A; 5DYF A; 1JGI A; 4ZX5 A; 2A7O A; 4XMX A; 4PVB A; 4FCA A; 2FFL A; 3CHS A; 4AR9 A; 3B7R L; 2PGG A; 4K5P A; 3QJX A; 4ZQF A; 5JMW A; 2VLA A; 3FUF A; 4ZW8 A; 2HPT A; 4A03 A; 5JBI A; 4R5X A; 5HNH A; 4Q4E A; 3FTZ A; 3B2P A; 2WPG A; 4X2U A; 2QJ1 A; 3UEQ A; 5JNL A; 2XPZ A; 5FWQ A; 3FTS A; 4ZX6 A; 2ZXG A; 3FTY A; 5DLL A; 1Q0H A; 2JCV A; 2HPO A; 2R59 A; 4QIR A; 2QVW A; 2WZG A; 2B61 A; 1SG7 A; 4GAE A; 4QME A; 1R0L A; 1MW0 A; 3B7T A; 3CZK A; 4Y67 A; 1MW1 A; 1ZS2 A; 2DQM A; 4FLO A; 3T8V A; 1ONN A; 4ZW7 A; 5JAZ A; 2VJ8 A; 3FUJ A; 5EV7 A; 2JD0 A; 4XMT A; 3CXB A; 3FUL A; 1G5A A; 4XO4 A; 3WQR A; 4QHP A; 4ZW6 A; 4XNB A; 4J3B A; 4FLS A; 4RVB A; 1R0K A; 3FHE A; 2C82 A; 4FLR A; 4L2L A; 1SC5 A; 3CHR A; 3AU8 A; 3B34 A; 2WZF A; 1X3Z A; 3FUN A; 3FTX A; 3FUD A; 4OOF A; 3ANM A; 4XNA A; 4AR1 A; 5BPP A; 2EGH A; 3CZE A; 4LUP A; 1OR7 A; 3VVL A; 3HW2 A; 1ONP A; 4RSY A; 3A06 A; 2GTQ A; 3Q43 A; 3JT1 A; 3EBG A; 3B7U X; 3FU6 A; 3FUM A; 4RCV A; 3AU9 A; 1JVS A; 4AR8 A; 4MKT A; 2Y1G A; 3B2X A; 3FTV A; 1MW3 A; 4XN4 A; 4KP7 A; 5DUL A; 3WQQ A; 2Y1E A; 1K5H A; 3FH5 A; 4XO3 A; 4XN1 A; 3CZL A; 3FUI A; 3ANL A; 3RC3 A; 3ZI0 A; 4R7L A; 4ZQG A; 3ZHX A; 4ZQE A; 3ZHZ A; 4ZX4 A; 1H19 A; 5HNF A; 3CIA A; 1S46 A; 3RAS A; 4DPR A; 2DQ6 A; 3FU5 A; 1T1R A; 2JD1 A; 3B3B A; 3JSZ A; 4Q4I A; 4QUO A; 3EBH A; 4K5O A; 2JV7 A; 3A14 A; 5JMP A; 2MAP A; 4K5N A; 4ARF A; 4ZQT A; 3Q44 A; 4CXF A; 2PUS A; 1Q0L A; 4NQW A; 3RC8 A; 4K5L A; 4GAA A; 3CHQ A; 3ZHY A; 3CHO A; 3B37 A; 4XMZ A; 3FUE A; 4R5T A; 2O7G A; 1RP3 A; 4Y6S A; 4AYS A; 3EBI A; 3CHP A; 3FTW A; 4Y6P A; 3WQS B; 3FUH A; 4R5V A; 3UER A; 3B7S A; 4XN8 A; 4XMU A; 3FU0 A; 3R0I A; 4XN9 A; 4XMV A; 2RJI A; 2MAO A; 1T1S A; 2Y1C A; 4PU2 A; 2Y1F A; 4OOE A; 4K5M A; 3VVM A; 1ONO A; 3AUA A; 3KED A; 4AIC A; 2JD2 A; 4ZX3 A; 1MW2 A; 4PW4 A; 5AEN A; 5HLT A; 4Y6R A; 1X3W A; 1HS6 A; 1GW6 A; 2JCY A; 4JND A; 4XND A; 1MVY A; 3CZG A; 3FUK A; 4ZW3 A; 2Y1D A; 4ZW5 A; 3FH8 A; 3IIE A; 2XPY A; 3U9W A; 2C5Z A; 1JG9 A; 4XN5 A; 3FH7 A; 5JC1 A; 4ZQH A; 3FU3 A; 5JO0 A; 3PUU A; 1Q0Q A; 4XO5 A; 4ZN6 A; 2R70 A; 3UCQ A; 4XN2 A; 4BKX A; 3FTU A; 1SQM A; 4QPE A; #chains in the Genus database with same CATH homology 3T0Y A; 2XQ0 A; 2JCX A; 2PL5 A; 3ANN A; 4MS6 A; 2R72 A; 4FLQ A; 4XN7 A; 1H3L A; 4XMW A; 5DYF A; 1JGI A; 4ZX5 A; 2A7O A; 4XMX A; 4PVB A; 4FCA A; 2FFL A; 3CHS A; 4AR9 A; 3B7R L; 2PGG A; 4K5P A; 3QJX A; 4ZQF A; 5JMW A; 2VLA A; 3FUF A; 4ZW8 A; 2HPT A; 4A03 A; 5JBI A; 4R5X A; 5HNH A; 4Q4E A; 3FTZ A; 3B2P A; 2WPG A; 4X2U A; 2QJ1 A; 3UEQ A; 5JNL A; 2XPZ A; 5FWQ A; 3FTS A; 4ZX6 A; 2ZXG A; 3FTY A; 5DLL A; 1Q0H A; 2JCV A; 2HPO A; 2R59 A; 4QIR A; 2QVW A; 2WZG A; 2B61 A; 1SG7 A; 4GAE A; 4QME A; 1R0L A; 1MW0 A; 3B7T A; 3CZK A; 4Y67 A; 1MW1 A; 1ZS2 A; 2DQM A; 4FLO A; 3T8V A; 1ONN A; 4ZW7 A; 5JAZ A; 2VJ8 A; 3FUJ A; 5EV7 A; 2JD0 A; 4XMT A; 3FUL A; 1G5A A; 4XO4 A; 3WQR A; 4QHP A; 4ZW6 A; 4XNB A; 4J3B A; 4FLS A; 4RVB A; 1R0K A; 3FHE A; 2C82 A; 4FLR A; 4L2L A; 1SC5 A; 3CHR A; 3AU8 A; 3B34 A; 2WZF A; 1X3Z A; 3FUN A; 3FTX A; 3FUD A; 4OOF A; 3ANM A; 4XNA A; 4AR1 A; 5BPP A; 2EGH A; 3CZE A; 4LUP A; 1OR7 A; 3VVL A; 1ONP A; 4RSY A; 3A06 A; 2GTQ A; 3Q43 A; 3JT1 A; 3EBG A; 3B7U X; 3FU6 A; 3FUM A; 4RCV A; 3AU9 A; 1JVS A; 4AR8 A; 4MKT A; 2Y1G A; 3B2X A; 3FTV A; 1MW3 A; 4XN4 A; 4KP7 A; 5DUL A; 3WQQ A; 2Y1E A; 1K5H A; 3FH5 A; 4XO3 A; 4XN1 A; 3CZL A; 3FUI A; 3ANL A; 3RC3 A; 3ZI0 A; 4R7L A; 4ZQG A; 3ZHX A; 4ZQE A; 3ZHZ A; 4ZX4 A; 1H19 A; 5HNF A; 3CIA A; 1S46 A; 3RAS A; 4DPR A; 2DQ6 A; 3FU5 A; 1T1R A; 2JD1 A; 3B3B A; 3JSZ A; 4Q4I A; 4QUO A; 3EBH A; 4K5O A; 2JV7 A; 3A14 A; 5JMP A; 2MAP A; 4K5N A; 4ARF A; 4ZQT A; 3Q44 A; 4CXF A; 2PUS A; 1Q0L A; 4NQW A; 3RC8 A; 4K5L A; 4GAA A; 3CHQ A; 3ZHY A; 3CHO A; 3B37 A; 4XMZ A; 3FUE A; 4R5T A; 2O7G A; 1RP3 A; 4Y6S A; 4AYS A; 3EBI A; 3CHP A; 3FTW A; 4Y6P A; 3WQS B; 3FUH A; 4R5V A; 3UER A; 3B7S A; 4XN8 A; 4XMU A; 3FU0 A; 3R0I A; 4XN9 A; 4XMV A; 2RJI A; 2MAO A; 1T1S A; 2Y1C A; 4PU2 A; 2Y1F A; 4OOE A; 4K5M A; 3VVM A; 1ONO A; 3AUA A; 3KED A; 4AIC A; 2JD2 A; 4ZX3 A; 1MW2 A; 4PW4 A; 5AEN A; 5HLT A; 4Y6R A; 1X3W A; 1HS6 A; 1GW6 A; 2JCY A; 4JND A; 4XND A; 1MVY A; 3CZG A; 3FUK A; 4ZW3 A; 2Y1D A; 4ZW5 A; 3FH8 A; 3IIE A; 2XPY A; 3U9W A; 2C5Z A; 1JG9 A; 4XN5 A; 3FH7 A; 5JC1 A; 4ZQH A; 3FU3 A; 5JO0 A; 3PUU A; 1Q0Q A; 4XO5 A; 4ZN6 A; 2R70 A; 3UCQ A; 4XN2 A; 4BKX A; 3FTU A; 1SQM A; 4QPE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
