2EHP | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	124
structure length	124
Chain Sequence	AIFTHEGKVEGVPGNYPLTAENLFRIGLALCTLWILDKEIEEPTLSIPETNFVTLALSVGFMNAGGSVNVGKGGDIKLFLQKGEIYVLEFQPLSETDIKKLESILFGRAPIPKKTGEDIGSFKC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 124 atoms

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Aquifex aeolicus
publication title	Crystal Structure of a Putative protein (AQ1627) from Aquifex aeolicus rcsb
molecule keywords	aq_1627 protein
total genus	36
structure length	124
sequence length	124
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-03-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	2ehpA00

1PCMX 4IL8A 2H4LX 3NA5A 3I3WA 1VKLA 2H5AX 3UW2A 2EIUA 3OLPA 3PDKA 3RSMA 1KFQA 3C04A 1K2YX 1K35A 1P5GX 4QG5A 1WQAA 3BKQX 1P5DX 4MRQA 2EHPA 1JDYA 5BMPA 2FKFA 5KL0A 5F9CA 2FUVA 5BMNA 2F7LA 5JN5A 1KFIA 3PMGA 1TUOA 4HJHA 1C47A 1LXTA 2Z0FA 5HSHA 1PCJX 1C4GA 5EPCA 2FKMX
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1PCM X;  4IL8 A;  2H4L X;  3NA5 A;  3I3W A;  1VKL A;  2H5A X;  3UW2 A;  2EIU A;  3OLP A;  3PDK A;  3RSM A;  1KFQ A;  3C04 A;  1K2Y X;  1K35 A;  1P5G X;  4QG5 A;  1WQA A;  3BKQ X;  1P5D X;  4MRQ A;  2EHP A;  1JDY A;  5BMP A;  2FKF A;  5KL0 A;  5F9C A;  2FUV A;  5BMN A;  2F7L A;  5JN5 A;  1KFI A;  3PMG A;  1TUO A;  4HJH A;  1C47 A;  1LXT A;  2Z0F A;  5HSH A;  1PCJ X;  1C4G A;  5EPC A;  2FKM X; 
#chains in the Genus database with same CATH topology
 1PCM X;  4IL8 A;  2H4L X;  3NA5 A;  3I3W A;  1VKL A;  2H5A X;  3UW2 A;  2EIU A;  3OLP A;  3PDK A;  3RSM A;  1KFQ A;  3C04 A;  1K2Y X;  1K35 A;  1P5G X;  4QG5 A;  1WQA A;  3BKQ X;  1P5D X;  4MRQ A;  2EHP A;  1JDY A;  5BMP A;  2FKF A;  5KL0 A;  5F9C A;  2FUV A;  5BMN A;  2F7L A;  5JN5 A;  1KFI A;  3PMG A;  1TUO A;  4HJH A;  1C47 A;  1LXT A;  2Z0F A;  5HSH A;  1PCJ X;  1C4G A;  5EPC A;  2FKM X; 
#chains in the Genus database with same CATH homology
 1PCM X;  4IL8 A;  2H4L X;  3NA5 A;  3I3W A;  1VKL A;  2H5A X;  3UW2 A;  2EIU A;  3OLP A;  3PDK A;  3RSM A;  1KFQ A;  3C04 A;  1K2Y X;  1K35 A;  1P5G X;  4QG5 A;  1WQA A;  3BKQ X;  1P5D X;  4MRQ A;  2EHP A;  1JDY A;  5BMP A;  2FKF A;  5KL0 A;  5F9C A;  2FUV A;  5BMN A;  2F7L A;  5JN5 A;  1KFI A;  3PMG A;  1TUO A;  4HJH A;  1C47 A;  1LXT A;  2Z0F A;  5HSH A;  1PCJ X;  1C4G A;  5EPC A;  2FKM X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2EHPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN