2Z0FA

Crystal structure of putative phosphoglucomutase from thermus thermophilus hb8
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
524
structure length
491
Chain Sequence
MEITRLLTLYYEATPDPQNPLEGVRFGTSGHRGSSLKATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPNPPEDGGFKYNPPTGGPANARITRAIEERANALLQEGLKGVKRLPLREALARAKPFDYAGLYVEKVAEAVDLEAIRASGLRIGVDPLGGASLRVWERLAESHGLPLEVVLLALKDRFDLAIGNDPDADRHGIVTPRGLMNPNHYLAAALHHLYTTRSWPGAKVGKTAVTSALLDRVAQALGREVYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQAPDALYEALAEKLGRPYYARKDLPVSPEAKARLARLSAKEVHPSTLAGEPVLQVLDRATGNGEPLGGIKVVAANAWFAVRPSGTEDVAKVYAESFLGEAHLERVLEEATALLHKALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords Putative phosphoglucomutase
publication title Crystal structure of putative phosphoglucomutase from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 163
structure length 491
sequence length 524
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2z0fA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2z0fA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2z0fA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2z0fA02
1JDYA 2H4LX 2EHPA 3PMGA 3RSMA 2DKCA 3PDKA 4BJUA 4MRQA 2FKFA 2DKAA 2FKMX 1LXTA 5KL0A 5BMPA 2H5AX 1P5GX 1WJWA 1PCMX 3ENOC 5HSHA 1KFIA 1C4GA 2DKDA 3C04A 1K2YX 3NA5A 1WQAA 1C47A 2JPIA 4WXAA 5BMNA 5JN5A 2EIUA 4HJHA 1P5DX 3UW2A 1KFQA 4QG5A 1VKLA 5JMVD 4WX8A 5F9CA 2F7LA 2FUVA 3BKQX 3ENCA 1PCJX 1TUOA 5EPCA 3OLPA 4IL8A 1K35A 2Z0FA 3I3WA
chains in the Genus database with same CATH superfamily
2OOXA 2Y8LA 3IH7A 2XHIA 3RPJA 2DKCA 1VTOA 4WZSD 1EBMA 2HL8A 1LXTA 1UT7A 2NOEA 1N39A 2H5AX 1QNAA 2QRCA 1J3MA 1PCMX 1T6AA 2V92A 1QN7A 3HS8A 5IYBP 2NOLA 3CVTA 2QR1A 2NOHA 1TBPA 2YA3A 3OSMA 4D7RA 1W80A 3TE5A 2JPIA 2NOIA 2JHNA 3OSEA 3UW2A 1YTFA 4DULA 4EAKA 3EAYA 2Z8UA 2NLVA 1VTLE 3VN5A 5JMVD 2D0AA 3OCIA 2FUVA 3ENCA 3OH6A 1NGMA 2IV9A 2LAEA 1E42A 1YQKA 3I3WA 3SNSA 1JDYA 2H4LX 2V8QA 2EHPA 3PMGA 3RSMA 1M3QA 3CWSA 3I0XA 4ROCB 3PDKA 2MZ8A 5KL0A 1KY6A 1UT4A 2DKAA 1YTBA 1C9BB 4EJYA 1WJWA 2O3OA 2EHBD 5HSHA 1R4XA 1DIZA 2DKDA 1QNEA 1Q9UA 1K2YX 1WQAA 3CWTA 3F0ZA 2QRDA 2G30A 3T4NA 1N3AA 2PWWA 5IYDP 4HJHA 1P5DX 2EIUA 2ZFDB 1KYFA 1KFQA 1AISA 3CW7A 1NH2A 4EJZA 2F7LA 2D0BA 3BKQX 1NVPA 1QN5A 3D7QA 1HU0A 2IV8A 3CWUA 1QN4A 1QN3A 3DPTA 2YH5A 1QTSA 5AN4A 2FGTA 1KO9A 2NOBA 4D7QA 4MRQA 2FKFA 3ULXA 2D0CA 3CWAA 1PCZA 5BMPA 1PZDA 3H1ZA 1P5GX 3KRMA 3DPUA 3I0WA 2V9JA 1C4GA 3C04A 3NA5A 1FN7A 1CDWA 1QN6A 1C47A 4WXAA 5BMNA 5JN5A 1YQMA 2I5WA 2MJ7A 1QN8A 2HKPA 4WX8A 5F9CA 5IYCP 4EAIA 1D3UA 1PCJX 1TUOA 1RM1A 1QN9A 1M5Q1 3OLPA 1XSZA 1UL7A 2JHJA 4I8OA 4IL8A 1K35A 2QREA 4TPSA 1KY7A 2HZMA 3OC3C 2Z0FA 1QTPA 3TDHA 2R5XA 4ROEB 1VOLB 1YQRA 1M3HA 1YQLA 1N3CA 4BJUA 2NOFA 2FKMX 4EAJA 1LWWA 1TBAB 3ASMA 1LWVA 1PVSA 2NWVA 4C7PA 4RODB 4CFFA 4EALA 1MP9A 3KTUA 3ENOC 1JFIC 1QNCA 1KFIA 3N89A 3F10A 4Q11A 2NOZA 1LWYA 1QNBA 2VJ0A 1B9KA 2HZSA 2OOYA 2Y8QA 4B0AA 4QG5A 1VKLA 2NVMA 1KYUA 3OGDA 1MPGA 2HL9A 3EIKA 5EPCA 4EAGA 3OH9A 4PY5A 2QLVA 1V5SA 3D4VA 3HS9A 1EUVA 1TGHA 1KYDA 3OSTA 2JOIA 1VOKA 3CVSA
chains in the Genus database with same CATH topology
1JDYA 2H4LX 2EHPA 3PMGA 3RSMA 2DKCA 3PDKA 4BJUA 4MRQA 2FKFA 2DKAA 2FKMX 1LXTA 5KL0A 5BMPA 2H5AX 1P5GX 1WJWA 1PCMX 3ENOC 5HSHA 1KFIA 1C4GA 2DKDA 3C04A 1K2YX 3NA5A 1WQAA 1C47A 2JPIA 4WXAA 5BMNA 5JN5A 2EIUA 4HJHA 1P5DX 3UW2A 1KFQA 4QG5A 1VKLA 5JMVD 4WX8A 5F9CA 2F7LA 2FUVA 3BKQX 3ENCA 1PCJX 1TUOA 5EPCA 3OLPA 4IL8A 1K35A 2Z0FA 3I3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JDY A;  2H4L X;  2EHP A;  3PMG A;  3RSM A;  2DKC A;  3PDK A;  4BJU A;  4MRQ A;  2FKF A;  2DKA A;  2FKM X;  1LXT A;  5KL0 A;  5BMP A;  2H5A X;  1P5G X;  1WJW A;  1PCM X;  3ENO C;  5HSH A;  1KFI A;  1C4G A;  2DKD A;  3C04 A;  1K2Y X;  3NA5 A;  1WQA A;  1C47 A;  2JPI A;  4WXA A;  5BMN A;  5JN5 A;  2EIU A;  4HJH A;  1P5D X;  3UW2 A;  1KFQ A;  4QG5 A;  1VKL A;  5JMV D;  4WX8 A;  5F9C A;  2F7L A;  2FUV A;  3BKQ X;  3ENC A;  1PCJ X;  1TUO A;  5EPC A;  3OLP A;  4IL8 A;  1K35 A;  2Z0F A;  3I3W A; 
#chains in the Genus database with same CATH topology
 2OOX A;  2Y8L A;  3IH7 A;  2XHI A;  3RPJ A;  2DKC A;  1VTO A;  4WZS D;  1EBM A;  2HL8 A;  1LXT A;  1UT7 A;  2NOE A;  1N39 A;  2H5A X;  1QNA A;  2QRC A;  1J3M A;  1PCM X;  1T6A A;  2V92 A;  1QN7 A;  3HS8 A;  5IYB P;  2NOL A;  3CVT A;  2QR1 A;  2NOH A;  1TBP A;  2YA3 A;  3OSM A;  4D7R A;  1W80 A;  3TE5 A;  2JPI A;  2NOI A;  2JHN A;  3OSE A;  3UW2 A;  1YTF A;  4DUL A;  4EAK A;  3EAY A;  2Z8U A;  2NLV A;  1VTL E;  3VN5 A;  5JMV D;  2D0A A;  3OCI A;  2FUV A;  3ENC A;  3OH6 A;  1NGM A;  2IV9 A;  2LAE A;  1E42 A;  1YQK A;  3I3W A;  3SNS A;  1JDY A;  2H4L X;  2V8Q A;  2EHP A;  3PMG A;  3RSM A;  1M3Q A;  3CWS A;  3I0X A;  4ROC B;  3PDK A;  2MZ8 A;  5KL0 A;  1KY6 A;  1UT4 A;  2DKA A;  1YTB A;  1C9B B;  4EJY A;  1WJW A;  2O3O A;  2EHB D;  5HSH A;  1R4X A;  1DIZ A;  2DKD A;  1QNE A;  1Q9U A;  1K2Y X;  1WQA A;  3CWT A;  3F0Z A;  2QRD A;  2G30 A;  3T4N A;  1N3A A;  2PWW A;  5IYD P;  4HJH A;  1P5D X;  2EIU A;  2ZFD B;  1KYF A;  1KFQ A;  1AIS A;  3CW7 A;  1NH2 A;  4EJZ A;  2F7L A;  2D0B A;  3BKQ X;  1NVP A;  1QN5 A;  3D7Q A;  1HU0 A;  2IV8 A;  3CWU A;  1QN4 A;  1QN3 A;  3DPT A;  2YH5 A;  1QTS A;  5AN4 A;  2FGT A;  1KO9 A;  2NOB A;  4D7Q A;  4MRQ A;  2FKF A;  3ULX A;  2D0C A;  3CWA A;  1PCZ A;  5BMP A;  1PZD A;  3H1Z A;  1P5G X;  3KRM A;  3DPU A;  3I0W A;  2V9J A;  1C4G A;  3C04 A;  3NA5 A;  1FN7 A;  1CDW A;  1QN6 A;  1C47 A;  4WXA A;  5BMN A;  5JN5 A;  1YQM A;  2I5W A;  2MJ7 A;  1QN8 A;  2HKP A;  4WX8 A;  5F9C A;  5IYC P;  4EAI A;  1D3U A;  1PCJ X;  1TUO A;  1RM1 A;  1QN9 A;  1M5Q 1;  3OLP A;  1XSZ A;  1UL7 A;  2JHJ A;  4I8O A;  4IL8 A;  1K35 A;  2QRE A;  4TPS A;  1KY7 A;  2HZM A;  3OC3 C;  2Z0F A;  1QTP A;  3TDH A;  2R5X A;  4ROE B;  1VOL B;  1YQR A;  1M3H A;  1YQL A;  1N3C A;  4BJU A;  2NOF A;  2FKM X;  4EAJ A;  1LWW A;  1TBA B;  3ASM A;  1LWV A;  1PVS A;  2NWV A;  4C7P A;  4ROD B;  4CFF A;  4EAL A;  1MP9 A;  3KTU A;  3ENO C;  1JFI C;  1QNC A;  1KFI A;  3N89 A;  3F10 A;  4Q11 A;  2NOZ A;  1LWY A;  1QNB A;  2VJ0 A;  1B9K A;  2HZS A;  2OOY A;  2Y8Q A;  4B0A A;  4QG5 A;  1VKL A;  2NVM A;  1KYU A;  3OGD A;  1MPG A;  2HL9 A;  3EIK A;  5EPC A;  4EAG A;  3OH9 A;  4PY5 A;  2QLV A;  1V5S A;  3D4V A;  3HS9 A;  1EUV A;  1TGH A;  1KYD A;  3OST A;  2JOI A;  1VOK A;  3CVS A; 
#chains in the Genus database with same CATH homology
 1JDY A;  2H4L X;  2EHP A;  3PMG A;  3RSM A;  2DKC A;  3PDK A;  4BJU A;  4MRQ A;  2FKF A;  2DKA A;  2FKM X;  1LXT A;  5KL0 A;  5BMP A;  2H5A X;  1P5G X;  1WJW A;  1PCM X;  3ENO C;  5HSH A;  1KFI A;  1C4G A;  2DKD A;  3C04 A;  1K2Y X;  3NA5 A;  1WQA A;  1C47 A;  2JPI A;  4WXA A;  5BMN A;  5JN5 A;  2EIU A;  4HJH A;  1P5D X;  3UW2 A;  1KFQ A;  4QG5 A;  1VKL A;  5JMV D;  4WX8 A;  5F9C A;  2F7L A;  2FUV A;  3BKQ X;  3ENC A;  1PCJ X;  1TUO A;  5EPC A;  3OLP A;  4IL8 A;  1K35 A;  2Z0F A;  3I3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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