5JN5A

Crystal structure of the d263y missense variant of human pgm1
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
563
structure length
558
Chain Sequence
NMVKIVTVKTQAYQDQKPGTSGLRKRVKVFQSSANYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIARIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAVCPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRSIFDFSALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPYPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVASATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKYGRNFFTRYDYEEVEAEGANKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGGATIRLYIDSYEKDVAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Homo sapiens
publication title Asp263 missense variants perturb the active site of human phosphoglucomutase 1.
pubmed doi rcsb
molecule keywords Phosphoglucomutase-1
total genus 187
structure length 558
sequence length 563
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2016-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 5jn5A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5jn5A02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5jn5A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5jn5A01
2EHPA 3I3WA 4BJUA 3PMGA 4QG5A 1K2YX 1TUOA 4MRQA 5HSHA 1PCMX 1PCJX 1KFIA 1WQAA 2FKFA 5JN5A 3ENOC 1C4GA 3RSMA 4WX8A 3ENCA 3NA5A 1P5DX 2FKMX 4WXAA 5EPCA 5BMNA 1K35A 4IL8A 2H4LX 1WJWA 1JDYA 2DKCA 5KL0A 2DKAA 1P5GX 2EIUA 2JPIA 2Z0FA 3OLPA 2F7LA 2FUVA 2H5AX 5F9CA 3UW2A 1C47A 1KFQA 3BKQX 2DKDA 3C04A 5BMPA 5JMVD 1VKLA 1LXTA 3PDKA 4HJHA
chains in the Genus database with same CATH superfamily
2YH5A 2YA3A 4BJUA 5IYCP 3CWUA 3PMGA 4I8OA 1VTOA 1K2YX 1TUOA 3OSTA 1PCJX 1KFIA 1Q9UA 1WQAA 1W80A 2FKFA 2IV8A 3DPUA 1QN9A 3CW7A 3ENOC 3H1ZA 3I0WA 2NOHA 1VOLB 1C4GA 2QRCA 1M3QA 3OH9A 3F10A 3NA5A 4EAGA 1M3HA 3ULXA 2FKMX 4WXAA 1QTPA 1KYUA 2HZSA 1TGHA 1K35A 1XSZA 1MPGA 1B9KA 2QR1A 3IH7A 2NOZA 2D0CA 2JHNA 1P5GX 3OC3C 1D3UA 2JPIA 2PWWA 3OLPA 1QNAA 2G30A 1M5Q1 1QNBA 3C04A 5BMPA 4EJZA 1EUVA 1KY7A 1TBPA 1YQLA 2EHBD 1PCZA 1NGMA 3I3WA 1YQMA 4QG5A 3EAYA 3KRMA 5IYDP 4MRQA 5HSHA 1NVPA 1KYDA 1UL7A 3EIKA 1R4XA 2OOYA 3T4NA 1QN7A 2HL8A 1QN5A 1PVSA 2NVMA 4DULA 2D0AA 3RSMA 4WX8A 1QN4A 4WZSD 1LWVA 4EAKA 2NLVA 2NWVA 2QREA 1YTBA 4IL8A 1QTSA 1WJWA 3D4VA 3CVTA 1UT4A 1KO9A 2DKCA 2V92A 2DKAA 1UT7A 2D0BA 1LWYA 2JOIA 2MZ8A 4D7RA 2FUVA 3OCIA 3TE5A 2I5WA 1JFIC 1C47A 2ZFDB 4EJYA 3KTUA 1QNEA 2HKPA 4ROCB 2V8QA 4EAJA 4HJHA 3D7QA 3HS8A 3CWAA 4CFFA 1T6AA 2QLVA 1RM1A 1QN6A 3DPTA 3N89A 1KYFA 1MP9A 1J3MA 1QN3A 5AN4A 1NH2A 1YQKA 4D7QA 4PY5A 2R5XA 2V9JA 1N3CA 2NOIA 1P5DX 4RODB 3HS9A 2QRDA 1N39A 2H4LX 2LAEA 1N3AA 3I0XA 1V5SA 5KL0A 1CDWA 1QN8A 2EIUA 2Z0FA 4EAIA 1YQRA 5F9CA 1EBMA 2JHJA 3BKQX 2HL9A 3OGDA 4EALA 1FN7A 5IYBP 1VKLA 2IV9A 1PZDA 1LXTA 3PDKA 4ROEB 2OOXA 5JN5A 2EHPA 3VN5A 1YTFA 1C9BB 2FGTA 3CWSA 2O3OA 2Y8QA 3SNSA 4C7PA 2HZMA 3OH6A 1PCMX 3OSEA 1E42A 4TPSA 2NOLA 1VOKA 1AISA 2MJ7A 2Z8UA 1HU0A 1VTLE 3CWTA 2NOFA 3ENCA 4B0AA 2NOBA 3RPJA 1QNCA 5EPCA 5BMNA 3OSMA 3TDHA 2NOEA 1KY6A 1JDYA 1DIZA 3F0ZA 3CVSA 2F7LA 2XHIA 2H5AX 2Y8LA 3UW2A 1KFQA 2DKDA 3ASMA 5JMVD 2VJ0A 1LWWA 1TBAB 4Q11A
chains in the Genus database with same CATH topology
2EHPA 3I3WA 4BJUA 3PMGA 4QG5A 1K2YX 1TUOA 4MRQA 5HSHA 1PCMX 1PCJX 1KFIA 1WQAA 2FKFA 5JN5A 3ENOC 1C4GA 3RSMA 4WX8A 3ENCA 3NA5A 1P5DX 2FKMX 4WXAA 5EPCA 5BMNA 1K35A 4IL8A 2H4LX 1WJWA 1JDYA 2DKCA 5KL0A 2DKAA 1P5GX 2EIUA 2JPIA 2Z0FA 3OLPA 2F7LA 2FUVA 2H5AX 5F9CA 3UW2A 1C47A 1KFQA 3BKQX 2DKDA 3C04A 5BMPA 5JMVD 1VKLA 1LXTA 3PDKA 4HJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EHP A;  3I3W A;  4BJU A;  3PMG A;  4QG5 A;  1K2Y X;  1TUO A;  4MRQ A;  5HSH A;  1PCM X;  1PCJ X;  1KFI A;  1WQA A;  2FKF A;  5JN5 A;  3ENO C;  1C4G A;  3RSM A;  4WX8 A;  3ENC A;  3NA5 A;  1P5D X;  2FKM X;  4WXA A;  5EPC A;  5BMN A;  1K35 A;  4IL8 A;  2H4L X;  1WJW A;  1JDY A;  2DKC A;  5KL0 A;  2DKA A;  1P5G X;  2EIU A;  2JPI A;  2Z0F A;  3OLP A;  2F7L A;  2FUV A;  2H5A X;  5F9C A;  3UW2 A;  1C47 A;  1KFQ A;  3BKQ X;  2DKD A;  3C04 A;  5BMP A;  5JMV D;  1VKL A;  1LXT A;  3PDK A;  4HJH A; 
#chains in the Genus database with same CATH topology
 2YH5 A;  2YA3 A;  4BJU A;  5IYC P;  3CWU A;  3PMG A;  4I8O A;  1VTO A;  1K2Y X;  1TUO A;  3OST A;  1PCJ X;  1KFI A;  1Q9U A;  1WQA A;  1W80 A;  2FKF A;  2IV8 A;  3DPU A;  1QN9 A;  3CW7 A;  3ENO C;  3H1Z A;  3I0W A;  2NOH A;  1VOL B;  1C4G A;  2QRC A;  1M3Q A;  3OH9 A;  3F10 A;  3NA5 A;  4EAG A;  1M3H A;  3ULX A;  2FKM X;  4WXA A;  1QTP A;  1KYU A;  2HZS A;  1TGH A;  1K35 A;  1XSZ A;  1MPG A;  1B9K A;  2QR1 A;  3IH7 A;  2NOZ A;  2D0C A;  2JHN A;  1P5G X;  3OC3 C;  1D3U A;  2JPI A;  2PWW A;  3OLP A;  1QNA A;  2G30 A;  1M5Q 1;  1QNB A;  3C04 A;  5BMP A;  4EJZ A;  1EUV A;  1KY7 A;  1TBP A;  1YQL A;  2EHB D;  1PCZ A;  1NGM A;  3I3W A;  1YQM A;  4QG5 A;  3EAY A;  3KRM A;  5IYD P;  4MRQ A;  5HSH A;  1NVP A;  1KYD A;  1UL7 A;  3EIK A;  1R4X A;  2OOY A;  3T4N A;  1QN7 A;  2HL8 A;  1QN5 A;  1PVS A;  2NVM A;  4DUL A;  2D0A A;  3RSM A;  4WX8 A;  1QN4 A;  4WZS D;  1LWV A;  4EAK A;  2NLV A;  2NWV A;  2QRE A;  1YTB A;  4IL8 A;  1QTS A;  1WJW A;  3D4V A;  3CVT A;  1UT4 A;  1KO9 A;  2DKC A;  2V92 A;  2DKA A;  1UT7 A;  2D0B A;  1LWY A;  2JOI A;  2MZ8 A;  4D7R A;  2FUV A;  3OCI A;  3TE5 A;  2I5W A;  1JFI C;  1C47 A;  2ZFD B;  4EJY A;  3KTU A;  1QNE A;  2HKP A;  4ROC B;  2V8Q A;  4EAJ A;  4HJH A;  3D7Q A;  3HS8 A;  3CWA A;  4CFF A;  1T6A A;  2QLV A;  1RM1 A;  1QN6 A;  3DPT A;  3N89 A;  1KYF A;  1MP9 A;  1J3M A;  1QN3 A;  5AN4 A;  1NH2 A;  1YQK A;  4D7Q A;  4PY5 A;  2R5X A;  2V9J A;  1N3C A;  2NOI A;  1P5D X;  4ROD B;  3HS9 A;  2QRD A;  1N39 A;  2H4L X;  2LAE A;  1N3A A;  3I0X A;  1V5S A;  5KL0 A;  1CDW A;  1QN8 A;  2EIU A;  2Z0F A;  4EAI A;  1YQR A;  5F9C A;  1EBM A;  2JHJ A;  3BKQ X;  2HL9 A;  3OGD A;  4EAL A;  1FN7 A;  5IYB P;  1VKL A;  2IV9 A;  1PZD A;  1LXT A;  3PDK A;  4ROE B;  2OOX A;  5JN5 A;  2EHP A;  3VN5 A;  1YTF A;  1C9B B;  2FGT A;  3CWS A;  2O3O A;  2Y8Q A;  3SNS A;  4C7P A;  2HZM A;  3OH6 A;  1PCM X;  3OSE A;  1E42 A;  4TPS A;  2NOL A;  1VOK A;  1AIS A;  2MJ7 A;  2Z8U A;  1HU0 A;  1VTL E;  3CWT A;  2NOF A;  3ENC A;  4B0A A;  2NOB A;  3RPJ A;  1QNC A;  5EPC A;  5BMN A;  3OSM A;  3TDH A;  2NOE A;  1KY6 A;  1JDY A;  1DIZ A;  3F0Z A;  3CVS A;  2F7L A;  2XHI A;  2H5A X;  2Y8L A;  3UW2 A;  1KFQ A;  2DKD A;  3ASM A;  5JMV D;  2VJ0 A;  1LWW A;  1TBA B;  4Q11 A; 
#chains in the Genus database with same CATH homology
 2EHP A;  3I3W A;  4BJU A;  3PMG A;  4QG5 A;  1K2Y X;  1TUO A;  4MRQ A;  5HSH A;  1PCM X;  1PCJ X;  1KFI A;  1WQA A;  2FKF A;  5JN5 A;  3ENO C;  1C4G A;  3RSM A;  4WX8 A;  3ENC A;  3NA5 A;  1P5D X;  2FKM X;  4WXA A;  5EPC A;  5BMN A;  1K35 A;  4IL8 A;  2H4L X;  1WJW A;  1JDY A;  2DKC A;  5KL0 A;  2DKA A;  1P5G X;  2EIU A;  2JPI A;  2Z0F A;  3OLP A;  2F7L A;  2FUV A;  2H5A X;  5F9C A;  3UW2 A;  1C47 A;  1KFQ A;  3BKQ X;  2DKD A;  3C04 A;  5BMP A;  5JMV D;  1VKL A;  1LXT A;  3PDK A;  4HJH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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