1TUOA

Crystal structure of putative phosphomannomutase from thermus thermophilus hb8
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
457
structure length
437
Chain Sequence
MSAPIRFGTEGFRGVIAREFTFATLHRLAEAYGRHLLERGGGLVVVGHDTRFLADAFARALSGHLAGMGLKVVLLKGPVPTPLLSFAVRHLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQEEAKAIEALVPEEARALEGAYETLDLREAYFEALKAHLDLKALSGFSGVLYHDSMGGAGAGFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLGPETPPSFAVATDGDADRVGVVLPGGVFFNPHQVLTTLALYRFRKGHRGRAVKNFAVTWLLDRLGERLGFGVTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKDLAEQFKEVEALTGLTHAYDRLDRPLAGLTPKGVDTLDGVKWLYEEAWVLFRASVRIYVEAQSPELVRALLEEARKLVEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords Putative phosphomannomutase
publication title Crystal structure of putative phosphomannomutase from Thermus Thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 145
structure length 437
sequence length 457
ec nomenclature
pdb deposition date 2004-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1tuoA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1tuoA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1tuoA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1tuoA02
1KFQA 2F7LA 5BMPA 1TUOA 2EHPA 4QG5A 4WX8A 3C04A 4IL8A 5JN5A 2DKCA 1C47A 1PCJX 2FKMX 2JPIA 3UW2A 3PDKA 1JDYA 2DKAA 2Z0FA 3OLPA 1P5DX 3NA5A 1VKLA 5JMVD 1KFIA 4WXAA 1K35A 5F9CA 1WQAA 3I3WA 2EIUA 5HSHA 3BKQX 1LXTA 5BMNA 3PMGA 2FKFA 2H4LX 2H5AX 1C4GA 2DKDA 2FUVA 3ENOC 1PCMX 1P5GX 4BJUA 3RSMA 3ENCA 1K2YX 1WJWA 5EPCA 5KL0A 4MRQA 4HJHA
chains in the Genus database with same CATH superfamily
1KFQA 2NVMA 3DPTA 4TPSA 5BMPA 1TUOA 2V9JA 1KO9A 1EUVA 3OSEA 4ROEB 3C04A 1Q9UA 2G30A 1QN3A 1PCJX 2IV8A 3UW2A 1M3QA 1RM1A 1J3MA 2DKAA 2LAEA 4C7PA 2JOIA 1P5DX 2FGTA 1QN8A 4DULA 1MPGA 1VOLB 3OC3C 2I5WA 1R4XA 3N89A 3I0WA 3I3WA 5AN4A 4EALA 1QN9A 3TE5A 1B9KA 1KYFA 2XHIA 3F10A 3EIKA 5HSHA 1QNCA 3F0ZA 2H5AX 2DKDA 2FUVA 2HKPA 1QN6A 1P5GX 2Z8UA 3IH7A 2NOIA 5KL0A 2QR1A 4B0AA 3TDHA 3CWSA 1KY7A 1N39A 1QNEA 1LWYA 2EHPA 1TGHA 4D7QA 1PCZA 1HU0A 2EHBD 4IL8A 3ULXA 3OCIA 2D0AA 2HZSA 5IYBP 4Q11A 3KTUA 3HS8A 1YQMA 1JFIC 1QNAA 2NOBA 4EJYA 1DIZA 2NOFA 2Z0FA 2OOYA 1EBMA 1XSZA 1TBPA 3NA5A 3SNSA 2Y8QA 5JMVD 1E42A 1KFIA 2O3OA 3KRMA 4ROCB 1K35A 1NH2A 1WQAA 3VN5A 3OSMA 2QRCA 1N3AA 1N3CA 3I0XA 1YTBA 1UT4A 2EIUA 3ASMA 1YTFA 1LXTA 1VTLE 3PMGA 2FKFA 4BJUA 2NOHA 3ENOC 1PCMX 1QTSA 2NWVA 3RSMA 1NGMA 2NOEA 1LWWA 1VOKA 5EPCA 2MZ8A 4EAJA 1UL7A 2F7LA 3H1ZA 1YQKA 4QG5A 1YQRA 2VJ0A 5JN5A 3OGDA 2DKCA 1C47A 2JPIA 2YH5A 1FN7A 3OH9A 2OOXA 3OLPA 1AISA 1YQLA 2IV9A 1VKLA 4EAGA 1M3HA 1KYDA 2ZFDB 4WXAA 5F9CA 5IYCP 4PY5A 2D0BA 2HL9A 3RPJA 1M5Q1 4EAKA 3CWTA 1QNBA 1VTOA 1UT7A 1PZDA 2H4LX 3T4NA 2QREA 1C4GA 4I8OA 2R5XA 3D7QA 1PVSA 4EJZA 3DPUA 1D3UA 3CW7A 2YA3A 2HL8A 4HJHA 4MRQA 1QN4A 4CFFA 1T6AA 2NOZA 1W80A 2V8QA 1C9BB 1KY6A 3CVSA 2NOLA 2FKMX 2JHNA 3HS9A 2Y8LA 1QN7A 4WZSD 3PDKA 1JDYA 2PWWA 3EAYA 3D4VA 2QRDA 3CVTA 1NVPA 2HZMA 1QN5A 1KYUA 2NLVA 2D0CA 1TBAB 2JHJA 1CDWA 2V92A 4RODB 4D7RA 3BKQX 2QLVA 5BMNA 5IYDP 1V5SA 3OSTA 3CWAA 1MP9A 4EAIA 1LWVA 3ENCA 1QTPA 1K2YX 1WJWA 3OH6A 3CWUA 2MJ7A 4WX8A
chains in the Genus database with same CATH topology
1KFQA 2F7LA 5BMPA 1TUOA 2EHPA 4QG5A 4WX8A 3C04A 4IL8A 5JN5A 2DKCA 1C47A 1PCJX 2FKMX 2JPIA 3UW2A 3PDKA 1JDYA 2DKAA 2Z0FA 3OLPA 1P5DX 3NA5A 1VKLA 5JMVD 1KFIA 4WXAA 1K35A 5F9CA 1WQAA 3I3WA 2EIUA 5HSHA 3BKQX 1LXTA 5BMNA 3PMGA 2FKFA 2H4LX 2H5AX 1C4GA 2DKDA 2FUVA 3ENOC 1PCMX 1P5GX 4BJUA 3RSMA 3ENCA 1K2YX 1WJWA 5EPCA 5KL0A 4MRQA 4HJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KFQ A;  2F7L A;  5BMP A;  1TUO A;  2EHP A;  4QG5 A;  4WX8 A;  3C04 A;  4IL8 A;  5JN5 A;  2DKC A;  1C47 A;  1PCJ X;  2FKM X;  2JPI A;  3UW2 A;  3PDK A;  1JDY A;  2DKA A;  2Z0F A;  3OLP A;  1P5D X;  3NA5 A;  1VKL A;  5JMV D;  1KFI A;  4WXA A;  1K35 A;  5F9C A;  1WQA A;  3I3W A;  2EIU A;  5HSH A;  3BKQ X;  1LXT A;  5BMN A;  3PMG A;  2FKF A;  2H4L X;  2H5A X;  1C4G A;  2DKD A;  2FUV A;  3ENO C;  1PCM X;  1P5G X;  4BJU A;  3RSM A;  3ENC A;  1K2Y X;  1WJW A;  5EPC A;  5KL0 A;  4MRQ A;  4HJH A; 
#chains in the Genus database with same CATH topology
 1KFQ A;  2NVM A;  3DPT A;  4TPS A;  5BMP A;  1TUO A;  2V9J A;  1KO9 A;  1EUV A;  3OSE A;  4ROE B;  3C04 A;  1Q9U A;  2G30 A;  1QN3 A;  1PCJ X;  2IV8 A;  3UW2 A;  1M3Q A;  1RM1 A;  1J3M A;  2DKA A;  2LAE A;  4C7P A;  2JOI A;  1P5D X;  2FGT A;  1QN8 A;  4DUL A;  1MPG A;  1VOL B;  3OC3 C;  2I5W A;  1R4X A;  3N89 A;  3I0W A;  3I3W A;  5AN4 A;  4EAL A;  1QN9 A;  3TE5 A;  1B9K A;  1KYF A;  2XHI A;  3F10 A;  3EIK A;  5HSH A;  1QNC A;  3F0Z A;  2H5A X;  2DKD A;  2FUV A;  2HKP A;  1QN6 A;  1P5G X;  2Z8U A;  3IH7 A;  2NOI A;  5KL0 A;  2QR1 A;  4B0A A;  3TDH A;  3CWS A;  1KY7 A;  1N39 A;  1QNE A;  1LWY A;  2EHP A;  1TGH A;  4D7Q A;  1PCZ A;  1HU0 A;  2EHB D;  4IL8 A;  3ULX A;  3OCI A;  2D0A A;  2HZS A;  5IYB P;  4Q11 A;  3KTU A;  3HS8 A;  1YQM A;  1JFI C;  1QNA A;  2NOB A;  4EJY A;  1DIZ A;  2NOF A;  2Z0F A;  2OOY A;  1EBM A;  1XSZ A;  1TBP A;  3NA5 A;  3SNS A;  2Y8Q A;  5JMV D;  1E42 A;  1KFI A;  2O3O A;  3KRM A;  4ROC B;  1K35 A;  1NH2 A;  1WQA A;  3VN5 A;  3OSM A;  2QRC A;  1N3A A;  1N3C A;  3I0X A;  1YTB A;  1UT4 A;  2EIU A;  3ASM A;  1YTF A;  1LXT A;  1VTL E;  3PMG A;  2FKF A;  4BJU A;  2NOH A;  3ENO C;  1PCM X;  1QTS A;  2NWV A;  3RSM A;  1NGM A;  2NOE A;  1LWW A;  1VOK A;  5EPC A;  2MZ8 A;  4EAJ A;  1UL7 A;  2F7L A;  3H1Z A;  1YQK A;  4QG5 A;  1YQR A;  2VJ0 A;  5JN5 A;  3OGD A;  2DKC A;  1C47 A;  2JPI A;  2YH5 A;  1FN7 A;  3OH9 A;  2OOX A;  3OLP A;  1AIS A;  1YQL A;  2IV9 A;  1VKL A;  4EAG A;  1M3H A;  1KYD A;  2ZFD B;  4WXA A;  5F9C A;  5IYC P;  4PY5 A;  2D0B A;  2HL9 A;  3RPJ A;  1M5Q 1;  4EAK A;  3CWT A;  1QNB A;  1VTO A;  1UT7 A;  1PZD A;  2H4L X;  3T4N A;  2QRE A;  1C4G A;  4I8O A;  2R5X A;  3D7Q A;  1PVS A;  4EJZ A;  3DPU A;  1D3U A;  3CW7 A;  2YA3 A;  2HL8 A;  4HJH A;  4MRQ A;  1QN4 A;  4CFF A;  1T6A A;  2NOZ A;  1W80 A;  2V8Q A;  1C9B B;  1KY6 A;  3CVS A;  2NOL A;  2FKM X;  2JHN A;  3HS9 A;  2Y8L A;  1QN7 A;  4WZS D;  3PDK A;  1JDY A;  2PWW A;  3EAY A;  3D4V A;  2QRD A;  3CVT A;  1NVP A;  2HZM A;  1QN5 A;  1KYU A;  2NLV A;  2D0C A;  1TBA B;  2JHJ A;  1CDW A;  2V92 A;  4ROD B;  4D7R A;  3BKQ X;  2QLV A;  5BMN A;  5IYD P;  1V5S A;  3OST A;  3CWA A;  1MP9 A;  4EAI A;  1LWV A;  3ENC A;  1QTP A;  1K2Y X;  1WJW A;  3OH6 A;  3CWU A;  2MJ7 A;  4WX8 A; 
#chains in the Genus database with same CATH homology
 1KFQ A;  2F7L A;  5BMP A;  1TUO A;  2EHP A;  4QG5 A;  4WX8 A;  3C04 A;  4IL8 A;  5JN5 A;  2DKC A;  1C47 A;  1PCJ X;  2FKM X;  2JPI A;  3UW2 A;  3PDK A;  1JDY A;  2DKA A;  2Z0F A;  3OLP A;  1P5D X;  3NA5 A;  1VKL A;  5JMV D;  1KFI A;  4WXA A;  1K35 A;  5F9C A;  1WQA A;  3I3W A;  2EIU A;  5HSH A;  3BKQ X;  1LXT A;  5BMN A;  3PMG A;  2FKF A;  2H4L X;  2H5A X;  1C4G A;  2DKD A;  2FUV A;  3ENO C;  1PCM X;  1P5G X;  4BJU A;  3RSM A;  3ENC A;  1K2Y X;  1WJW A;  5EPC A;  5KL0 A;  4MRQ A;  4HJH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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