3C04A

Structure of the p368g mutant of pmm/pgm from p. aeruginosa
Total Genus 169
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
169
sequence length
458
structure length
457
Chain Sequence
APTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFGSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphomannomutase/phosphoglucomutase
publication title Backbone flexibility, conformational change, and catalysis in a phosphohexomutase from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 169
structure length 457
sequence length 458
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2008-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3c04A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3c04A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3c04A01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3c04A02
5JN5A 2FUVA 5JMVD 5KL0A 2FKFA 4IL8A 3BKQX 5F9CA 2EHPA 4WXAA 5HSHA 5BMNA 1LXTA 1VKLA 3PMGA 3C04A 2Z0FA 1WJWA 1C4GA 4WX8A 5EPCA 4HJHA 2F7LA 2DKDA 1JDYA 2EIUA 2DKCA 4QG5A 3ENOC 1K2YX 3RSMA 4BJUA 5BMPA 2H5AX 2JPIA 3OLPA 1TUOA 1K35A 1PCMX 1C47A 1PCJX 3ENCA 3I3WA 1KFQA 2FKMX 3NA5A 3PDKA 4MRQA 2DKAA 2H4LX 1P5GX 1P5DX 3UW2A 1WQAA 1KFIA
chains in the Genus database with same CATH superfamily
2IV9A 2FKFA 4IL8A 4D7RA 5F9CA 5IYCP 4WXAA 2MJ7A 1LXTA 1VKLA 1QNBA 2Y8QA 1RM1A 2NOHA 1MPGA 4WX8A 3TE5A 1T6AA 4HJHA 1HU0A 4EJYA 2NOFA 4B0AA 1QTPA 2DKCA 4QG5A 3ENOC 4TPSA 4BJUA 3ULXA 5BMPA 1KYFA 4WZSD 2VJ0A 1YTFA 2OOYA 4PY5A 4I8OA 3KRMA 2D0BA 3OLPA 3I0XA 3KTUA 3CVSA 1KFQA 3N89A 3HS8A 3SNSA 1M3QA 2D0AA 1P5GX 1TGHA 2IV8A 2Z8UA 1WQAA 5IYDP 1YTBA 2D0CA 1KFIA 2V8QA 1XSZA 2G30A 1C9BB 3OGDA 2QLVA 1E42A 2YH5A 2QREA 3BKQX 3OSMA 1YQKA 2FGTA 2NWVA 4EALA 5BMNA 5HSHA 1N39A 1M5Q1 2ZFDB 1PCZA 1Q9UA 2NOEA 1QN7A 1TBAB 2NVMA 5EPCA 1YQMA 1QN4A 2F7LA 4C7PA 1JDYA 5AN4A 3RSMA 2H5AX 1J3MA 1QNAA 2HL9A 1NGMA 4EAIA 1TUOA 1K35A 1UT4A 2R5XA 1C47A 2OOXA 3I3WA 1QN9A 1M3HA 1NH2A 1N3CA 3CWUA 1W80A 2HL8A 3CWTA 2H4LX 1QN3A 3T4NA 4EAJA 3OCIA 2V92A 2QRDA 2NOIA 2LAEA 2HZSA 5JN5A 2FUVA 1EBMA 5JMVD 1KYDA 5KL0A 2I5WA 2EHBD 3RPJA 1PVSA 4EAKA 2EHPA 1R4XA 3OH6A 1KO9A 2NOBA 2NOLA 3C04A 1VTLE 1NVPA 1UL7A 3CVTA 1WJWA 1KY7A 2HZMA 1YQRA 1QN5A 1MP9A 4ROCB 1B9KA 4Q11A 2QR1A 3TDHA 4CFFA 1K2YX 2JHJA 4RODB 1V5SA 1N3AA 1LWWA 2V9JA 3EAYA 1VOKA 4ROEB 3D7QA 3ENCA 1KYUA 3NA5A 2FKMX 1QNEA 3CWAA 1DIZA 3DPUA 2HKPA 2MZ8A 3F10A 3OSEA 3I0WA 1LWYA 1UT7A 3UW2A 3CWSA 1VTOA 3OH9A 4D7QA 3HS9A 1EUVA 3OSTA 2QRCA 3PMGA 3DPTA 1YQLA 2Z0FA 1D3UA 5IYBP 1QNCA 3H1ZA 4EAGA 1CDWA 3CW7A 1C4GA 1QN8A 1VOLB 4EJZA 2JOIA 2XHIA 3OC3C 2DKDA 2EIUA 3D4VA 2NOZA 2O3OA 3ASMA 4DULA 2JPIA 2NLVA 2PWWA 1FN7A 3F0ZA 1TBPA 1PZDA 1LWVA 1PCMX 1PCJX 2Y8LA 3EIKA 3PDKA 4MRQA 3VN5A 2DKAA 3IH7A 1AISA 1JFIC 2YA3A 1QN6A 1KY6A 1P5DX 2JHNA 1QTSA
chains in the Genus database with same CATH topology
5JN5A 2FUVA 5JMVD 5KL0A 2FKFA 4IL8A 3BKQX 5F9CA 2EHPA 4WXAA 5HSHA 5BMNA 1LXTA 1VKLA 3PMGA 3C04A 2Z0FA 1WJWA 1C4GA 4WX8A 5EPCA 4HJHA 2F7LA 2DKDA 1JDYA 2EIUA 2DKCA 4QG5A 3ENOC 1K2YX 3RSMA 4BJUA 5BMPA 2H5AX 2JPIA 3OLPA 1TUOA 1K35A 1PCMX 1C47A 1PCJX 3ENCA 3I3WA 1KFQA 2FKMX 3NA5A 3PDKA 4MRQA 2DKAA 2H4LX 1P5GX 1P5DX 3UW2A 1WQAA 1KFIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JN5 A;  2FUV A;  5JMV D;  5KL0 A;  2FKF A;  4IL8 A;  3BKQ X;  5F9C A;  2EHP A;  4WXA A;  5HSH A;  5BMN A;  1LXT A;  1VKL A;  3PMG A;  3C04 A;  2Z0F A;  1WJW A;  1C4G A;  4WX8 A;  5EPC A;  4HJH A;  2F7L A;  2DKD A;  1JDY A;  2EIU A;  2DKC A;  4QG5 A;  3ENO C;  1K2Y X;  3RSM A;  4BJU A;  5BMP A;  2H5A X;  2JPI A;  3OLP A;  1TUO A;  1K35 A;  1PCM X;  1C47 A;  1PCJ X;  3ENC A;  3I3W A;  1KFQ A;  2FKM X;  3NA5 A;  3PDK A;  4MRQ A;  2DKA A;  2H4L X;  1P5G X;  1P5D X;  3UW2 A;  1WQA A;  1KFI A; 
#chains in the Genus database with same CATH topology
 2IV9 A;  2FKF A;  4IL8 A;  4D7R A;  5F9C A;  5IYC P;  4WXA A;  2MJ7 A;  1LXT A;  1VKL A;  1QNB A;  2Y8Q A;  1RM1 A;  2NOH A;  1MPG A;  4WX8 A;  3TE5 A;  1T6A A;  4HJH A;  1HU0 A;  4EJY A;  2NOF A;  4B0A A;  1QTP A;  2DKC A;  4QG5 A;  3ENO C;  4TPS A;  4BJU A;  3ULX A;  5BMP A;  1KYF A;  4WZS D;  2VJ0 A;  1YTF A;  2OOY A;  4PY5 A;  4I8O A;  3KRM A;  2D0B A;  3OLP A;  3I0X A;  3KTU A;  3CVS A;  1KFQ A;  3N89 A;  3HS8 A;  3SNS A;  1M3Q A;  2D0A A;  1P5G X;  1TGH A;  2IV8 A;  2Z8U A;  1WQA A;  5IYD P;  1YTB A;  2D0C A;  1KFI A;  2V8Q A;  1XSZ A;  2G30 A;  1C9B B;  3OGD A;  2QLV A;  1E42 A;  2YH5 A;  2QRE A;  3BKQ X;  3OSM A;  1YQK A;  2FGT A;  2NWV A;  4EAL A;  5BMN A;  5HSH A;  1N39 A;  1M5Q 1;  2ZFD B;  1PCZ A;  1Q9U A;  2NOE A;  1QN7 A;  1TBA B;  2NVM A;  5EPC A;  1YQM A;  1QN4 A;  2F7L A;  4C7P A;  1JDY A;  5AN4 A;  3RSM A;  2H5A X;  1J3M A;  1QNA A;  2HL9 A;  1NGM A;  4EAI A;  1TUO A;  1K35 A;  1UT4 A;  2R5X A;  1C47 A;  2OOX A;  3I3W A;  1QN9 A;  1M3H A;  1NH2 A;  1N3C A;  3CWU A;  1W80 A;  2HL8 A;  3CWT A;  2H4L X;  1QN3 A;  3T4N A;  4EAJ A;  3OCI A;  2V92 A;  2QRD A;  2NOI A;  2LAE A;  2HZS A;  5JN5 A;  2FUV A;  1EBM A;  5JMV D;  1KYD A;  5KL0 A;  2I5W A;  2EHB D;  3RPJ A;  1PVS A;  4EAK A;  2EHP A;  1R4X A;  3OH6 A;  1KO9 A;  2NOB A;  2NOL A;  3C04 A;  1VTL E;  1NVP A;  1UL7 A;  3CVT A;  1WJW A;  1KY7 A;  2HZM A;  1YQR A;  1QN5 A;  1MP9 A;  4ROC B;  1B9K A;  4Q11 A;  2QR1 A;  3TDH A;  4CFF A;  1K2Y X;  2JHJ A;  4ROD B;  1V5S A;  1N3A A;  1LWW A;  2V9J A;  3EAY A;  1VOK A;  4ROE B;  3D7Q A;  3ENC A;  1KYU A;  3NA5 A;  2FKM X;  1QNE A;  3CWA A;  1DIZ A;  3DPU A;  2HKP A;  2MZ8 A;  3F10 A;  3OSE A;  3I0W A;  1LWY A;  1UT7 A;  3UW2 A;  3CWS A;  1VTO A;  3OH9 A;  4D7Q A;  3HS9 A;  1EUV A;  3OST A;  2QRC A;  3PMG A;  3DPT A;  1YQL A;  2Z0F A;  1D3U A;  5IYB P;  1QNC A;  3H1Z A;  4EAG A;  1CDW A;  3CW7 A;  1C4G A;  1QN8 A;  1VOL B;  4EJZ A;  2JOI A;  2XHI A;  3OC3 C;  2DKD A;  2EIU A;  3D4V A;  2NOZ A;  2O3O A;  3ASM A;  4DUL A;  2JPI A;  2NLV A;  2PWW A;  1FN7 A;  3F0Z A;  1TBP A;  1PZD A;  1LWV A;  1PCM X;  1PCJ X;  2Y8L A;  3EIK A;  3PDK A;  4MRQ A;  3VN5 A;  2DKA A;  3IH7 A;  1AIS A;  1JFI C;  2YA3 A;  1QN6 A;  1KY6 A;  1P5D X;  2JHN A;  1QTS A; 
#chains in the Genus database with same CATH homology
 5JN5 A;  2FUV A;  5JMV D;  5KL0 A;  2FKF A;  4IL8 A;  3BKQ X;  5F9C A;  2EHP A;  4WXA A;  5HSH A;  5BMN A;  1LXT A;  1VKL A;  3PMG A;  3C04 A;  2Z0F A;  1WJW A;  1C4G A;  4WX8 A;  5EPC A;  4HJH A;  2F7L A;  2DKD A;  1JDY A;  2EIU A;  2DKC A;  4QG5 A;  3ENO C;  1K2Y X;  3RSM A;  4BJU A;  5BMP A;  2H5A X;  2JPI A;  3OLP A;  1TUO A;  1K35 A;  1PCM X;  1C47 A;  1PCJ X;  3ENC A;  3I3W A;  1KFQ A;  2FKM X;  3NA5 A;  3PDK A;  4MRQ A;  2DKA A;  2H4L X;  1P5G X;  1P5D X;  3UW2 A;  1WQA A;  1KFI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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