1VKLA

Rabbit muscle phosphoglucomutase
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PHOSPHOGLUCOMUTASE
publication title Structural changes at the metal ion binding site during the phosphoglucomutase reaction.
pubmed doi rcsb
molecule tags Phosphotransferase
total genus 192
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1996-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1vklA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA01
2H5AX 1LXTA 1K35A 4HJHA 4WX8A 5EPCA 2F7LA 4BJUA 1KFIA 5F9CA 3PMGA 2EHPA 3ENCA 2DKDA 3I3WA 1PCJX 5HSHA 1KFQA 5BMPA 2EIUA 2Z0FA 1WJWA 2DKAA 2FUVA 1K2YX 4IL8A 1TUOA 1JDYA 3PDKA 3UW2A 3OLPA 5KL0A 4WXAA 1P5DX 3C04A 1C4GA 4QG5A 2FKMX 2H4LX 1VKLA 2FKFA 1PCMX 1WQAA 5JN5A 3ENOC 5JMVD 1P5GX 2DKCA 3RSMA 3BKQX 3NA5A 4MRQA 2JPIA 5BMNA 1C47A
chains in the Genus database with same CATH superfamily
2EHBD 3OH9A 1LXTA 3D7QA 2JHJA 4HJHA 5EPCA 1QN3A 3KRMA 2NOLA 4WZSD 1VOLB 3ENCA 1VOKA 1UT7A 1M5Q1 2DKDA 1KO9A 3OSEA 5BMPA 5HSHA 3ASMA 3TE5A 1M3QA 1AISA 2QRDA 4IL8A 1D3UA 2IV8A 1QN6A 4B0AA 1J3MA 2Z8UA 3OCIA 3SNSA 2D0BA 4WXAA 1P5DX 1QTSA 3C04A 4Q11A 2Y8QA 3DPUA 1C4GA 3H1ZA 4EJYA 4D7QA 1PZDA 1NH2A 2YA3A 1VKLA 2FKFA 5IYBP 2NOBA 3CWSA 4EJZA 1FN7A 1T6AA 2G30A 2IV9A 3ENOC 2NOHA 2OOYA 3RSMA 2YH5A 3OC3C 4DULA 4MRQA 2JPIA 4CFFA 1C47A 1YQMA 5IYDP 1Q9UA 2H5AX 3T4NA 3EIKA 2HKPA 1K35A 1QNEA 1RM1A 5F9CA 1KFIA 1LWYA 1KYUA 4TPSA 1YQRA 3HS8A 2Y8LA 2EIUA 1KFQA 2NWVA 1LWVA 1QN9A 1R4XA 1MPGA 1WJWA 2DKAA 2FUVA 3I0XA 1CDWA 1QNAA 1K2YX 2NVMA 1EBMA 1TUOA 1NVPA 2MJ7A 2V92A 3PDKA 1V5SA 2MZ8A 5KL0A 2D0AA 2QLVA 1YTBA 2NOIA 1QN5A 1XSZA 3IH7A 2HZMA 2V9JA 2H4LX 2V8QA 1PCZA 1WQAA 1QNCA 5JMVD 1YQLA 3EAYA 3BKQX 4EALA 2HZSA 3NA5A 2FGTA 4EAIA 2F7LA 2VJ0A 1KY6A 3OSMA 3CVSA 4EAKA 1QNBA 1TBAB 4BJUA 1VTOA 3TDHA 1VTLE 2EHPA 1YQKA 2I5WA 1JFIC 1QTPA 3HS9A 1PCJX 1DIZA 3RPJA 1C9BB 2HL9A 2QR1A 1W80A 1QN4A 1KYFA 1JDYA 2QRCA 2LAEA 3UW2A 3OGDA 1N3AA 1N3CA 3OLPA 2JOIA 1QN7A 2QREA 2HL8A 1E42A 1UT4A 1MP9A 4EAJA 3I0WA 2R5XA 4QG5A 5AN4A 2FKMX 1PCMX 4ROCB 2D0CA 5JN5A 2NOEA 3CWTA 1KYDA 4PY5A 2OOXA 3F0ZA 5IYCP 3OH6A 2O3OA 5BMNA 1TGHA 2JHNA 3D4VA 1HU0A 3CVTA 4WX8A 1M3HA 1B9KA 3KTUA 3PMGA 2NLVA 3F10A 3ULXA 2NOZA 3I3WA 3CW7A 2Z0FA 3N89A 4EAGA 1PVSA 1YTFA 2ZFDB 2XHIA 2NOFA 1LWWA 3OSTA 1UL7A 4D7RA 1N39A 1NGMA 3CWAA 1TBPA 1P5GX 4RODB 2DKCA 1KY7A 4C7PA 3CWUA 1QN8A 4I8OA 3DPTA 4ROEB 2PWWA 3VN5A 1EUVA
chains in the Genus database with same CATH topology
2H5AX 1LXTA 1K35A 4HJHA 4WX8A 5EPCA 2F7LA 4BJUA 1KFIA 5F9CA 3PMGA 2EHPA 3ENCA 2DKDA 3I3WA 1PCJX 5HSHA 1KFQA 5BMPA 2EIUA 2Z0FA 1WJWA 2DKAA 2FUVA 1K2YX 4IL8A 1TUOA 1JDYA 3PDKA 3UW2A 3OLPA 5KL0A 4WXAA 1P5DX 3C04A 1C4GA 4QG5A 2FKMX 2H4LX 1VKLA 2FKFA 1PCMX 1WQAA 5JN5A 3ENOC 5JMVD 1P5GX 2DKCA 3RSMA 3BKQX 3NA5A 4MRQA 2JPIA 5BMNA 1C47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H5A X;  1LXT A;  1K35 A;  4HJH A;  4WX8 A;  5EPC A;  2F7L A;  4BJU A;  1KFI A;  5F9C A;  3PMG A;  2EHP A;  3ENC A;  2DKD A;  3I3W A;  1PCJ X;  5HSH A;  1KFQ A;  5BMP A;  2EIU A;  2Z0F A;  1WJW A;  2DKA A;  2FUV A;  1K2Y X;  4IL8 A;  1TUO A;  1JDY A;  3PDK A;  3UW2 A;  3OLP A;  5KL0 A;  4WXA A;  1P5D X;  3C04 A;  1C4G A;  4QG5 A;  2FKM X;  2H4L X;  1VKL A;  2FKF A;  1PCM X;  1WQA A;  5JN5 A;  3ENO C;  5JMV D;  1P5G X;  2DKC A;  3RSM A;  3BKQ X;  3NA5 A;  4MRQ A;  2JPI A;  5BMN A;  1C47 A; 
#chains in the Genus database with same CATH topology
 2EHB D;  3OH9 A;  1LXT A;  3D7Q A;  2JHJ A;  4HJH A;  5EPC A;  1QN3 A;  3KRM A;  2NOL A;  4WZS D;  1VOL B;  3ENC A;  1VOK A;  1UT7 A;  1M5Q 1;  2DKD A;  1KO9 A;  3OSE A;  5BMP A;  5HSH A;  3ASM A;  3TE5 A;  1M3Q A;  1AIS A;  2QRD A;  4IL8 A;  1D3U A;  2IV8 A;  1QN6 A;  4B0A A;  1J3M A;  2Z8U A;  3OCI A;  3SNS A;  2D0B A;  4WXA A;  1P5D X;  1QTS A;  3C04 A;  4Q11 A;  2Y8Q A;  3DPU A;  1C4G A;  3H1Z A;  4EJY A;  4D7Q A;  1PZD A;  1NH2 A;  2YA3 A;  1VKL A;  2FKF A;  5IYB P;  2NOB A;  3CWS A;  4EJZ A;  1FN7 A;  1T6A A;  2G30 A;  2IV9 A;  3ENO C;  2NOH A;  2OOY A;  3RSM A;  2YH5 A;  3OC3 C;  4DUL A;  4MRQ A;  2JPI A;  4CFF A;  1C47 A;  1YQM A;  5IYD P;  1Q9U A;  2H5A X;  3T4N A;  3EIK A;  2HKP A;  1K35 A;  1QNE A;  1RM1 A;  5F9C A;  1KFI A;  1LWY A;  1KYU A;  4TPS A;  1YQR A;  3HS8 A;  2Y8L A;  2EIU A;  1KFQ A;  2NWV A;  1LWV A;  1QN9 A;  1R4X A;  1MPG A;  1WJW A;  2DKA A;  2FUV A;  3I0X A;  1CDW A;  1QNA A;  1K2Y X;  2NVM A;  1EBM A;  1TUO A;  1NVP A;  2MJ7 A;  2V92 A;  3PDK A;  1V5S A;  2MZ8 A;  5KL0 A;  2D0A A;  2QLV A;  1YTB A;  2NOI A;  1QN5 A;  1XSZ A;  3IH7 A;  2HZM A;  2V9J A;  2H4L X;  2V8Q A;  1PCZ A;  1WQA A;  1QNC A;  5JMV D;  1YQL A;  3EAY A;  3BKQ X;  4EAL A;  2HZS A;  3NA5 A;  2FGT A;  4EAI A;  2F7L A;  2VJ0 A;  1KY6 A;  3OSM A;  3CVS A;  4EAK A;  1QNB A;  1TBA B;  4BJU A;  1VTO A;  3TDH A;  1VTL E;  2EHP A;  1YQK A;  2I5W A;  1JFI C;  1QTP A;  3HS9 A;  1PCJ X;  1DIZ A;  3RPJ A;  1C9B B;  2HL9 A;  2QR1 A;  1W80 A;  1QN4 A;  1KYF A;  1JDY A;  2QRC A;  2LAE A;  3UW2 A;  3OGD A;  1N3A A;  1N3C A;  3OLP A;  2JOI A;  1QN7 A;  2QRE A;  2HL8 A;  1E42 A;  1UT4 A;  1MP9 A;  4EAJ A;  3I0W A;  2R5X A;  4QG5 A;  5AN4 A;  2FKM X;  1PCM X;  4ROC B;  2D0C A;  5JN5 A;  2NOE A;  3CWT A;  1KYD A;  4PY5 A;  2OOX A;  3F0Z A;  5IYC P;  3OH6 A;  2O3O A;  5BMN A;  1TGH A;  2JHN A;  3D4V A;  1HU0 A;  3CVT A;  4WX8 A;  1M3H A;  1B9K A;  3KTU A;  3PMG A;  2NLV A;  3F10 A;  3ULX A;  2NOZ A;  3I3W A;  3CW7 A;  2Z0F A;  3N89 A;  4EAG A;  1PVS A;  1YTF A;  2ZFD B;  2XHI A;  2NOF A;  1LWW A;  3OST A;  1UL7 A;  4D7R A;  1N39 A;  1NGM A;  3CWA A;  1TBP A;  1P5G X;  4ROD B;  2DKC A;  1KY7 A;  4C7P A;  3CWU A;  1QN8 A;  4I8O A;  3DPT A;  4ROE B;  2PWW A;  3VN5 A;  1EUV A; 
#chains in the Genus database with same CATH homology
 2H5A X;  1LXT A;  1K35 A;  4HJH A;  4WX8 A;  5EPC A;  2F7L A;  4BJU A;  1KFI A;  5F9C A;  3PMG A;  2EHP A;  3ENC A;  2DKD A;  3I3W A;  1PCJ X;  5HSH A;  1KFQ A;  5BMP A;  2EIU A;  2Z0F A;  1WJW A;  2DKA A;  2FUV A;  1K2Y X;  4IL8 A;  1TUO A;  1JDY A;  3PDK A;  3UW2 A;  3OLP A;  5KL0 A;  4WXA A;  1P5D X;  3C04 A;  1C4G A;  4QG5 A;  2FKM X;  2H4L X;  1VKL A;  2FKF A;  1PCM X;  1WQA A;  5JN5 A;  3ENO C;  5JMV D;  1P5G X;  2DKC A;  3RSM A;  3BKQ X;  3NA5 A;  4MRQ A;  2JPI A;  5BMN A;  1C47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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