1VKLA

Rabbit muscle phosphoglucomutase
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Phosphotransferase
molecule keywords PHOSPHOGLUCOMUTASE
publication title Structural changes at the metal ion binding site during the phosphoglucomutase reaction.
pubmed doi rcsb
total genus 192
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1996-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1vklA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA01
5JN5A 3OLPA 2Z0FA 2F7LA 2DKCA 5KL0A 3BKQX 4QG5A 1PCMX 1K2YX 4IL8A 3UW2A 1P5GX 5BMNA 2JPIA 2EHPA 1LXTA 3ENOC 4MRQA 5BMPA 1K35A 4HJHA 2DKDA 5EPCA 2H5AX 3NA5A 1P5DX 5F9CA 2H4LX 3RSMA 1VKLA 2FKMX 2DKAA 3I3WA 3PDKA 1PCJX 2FUVA 3ENCA 4WX8A 3PMGA 4WXAA 1KFQA 1C4GA 1JDYA 4BJUA 1KFIA 5JMVD 2EIUA 1C47A 1WQAA 2FKFA 5HSHA 3C04A 1TUOA 1WJWA
chains in the Genus database with same CATH superfamily
2VJ0A 4ROCB 5JN5A 2D0BA 3DPUA 1E42A 1C9BB 4QG5A 3KTUA 3CVSA 2HL9A 3UW2A 1P5GX 1TBAB 2NOZA 2JPIA 1LXTA 4MRQA 5BMPA 1QNEA 1N3CA 3DPTA 1LWWA 1QTSA 2H5AX 1P5DX 2PWWA 1LWVA 1UT7A 1MP9A 3RSMA 1VKLA 1PCZA 2EHBD 2FKMX 3TE5A 3CVTA 3CWSA 1PVSA 2DKAA 3I3WA 3ENCA 4EJYA 4EAIA 1KYDA 4WX8A 1AISA 4WXAA 3I0WA 1QNAA 3OH6A 4EAJA 4EALA 2G30A 2YA3A 3ULXA 1QN5A 5IYDP 1TUOA 3N89A 4EAKA 3OSMA 4I8OA 2R5XA 2F7LA 2O3OA 2QRCA 1N39A 2Y8QA 4B0AA 4CFFA 2QRDA 1K2YX 2HL8A 4IL8A 3T4NA 1DIZA 2IV9A 5BMNA 1VOLB 1QNBA 2EHPA 1J3MA 1VOKA 1K35A 1QN7A 1YTFA 1QTPA 4C7PA 4HJHA 1UT4A 5AN4A 2V9JA 1VTLE 3CWUA 1M3QA 4EAGA 1W80A 3D4VA 2I5WA 2HZMA 2NWVA 2QR1A 3I0XA 2FUVA 1KY7A 2D0AA 2Y8LA 1XSZA 2D0CA 1D3UA 1TGHA 4Q11A 1C4GA 2MJ7A 3H1ZA 3ASMA 1C47A 3OH9A 1M3HA 2NOBA 3F10A 5HSHA 2NOIA 2NOLA 1R4XA 3KRMA 1CDWA 3OLPA 2Z0FA 1YTBA 3F0ZA 1UL7A 2DKCA 2XHIA 1FN7A 3BKQX 1QN4A 2V8QA 1HU0A 1NVPA 1B9KA 1Q9UA 2NVMA 3OC3C 4WZSD 1YQKA 3ENOC 1PZDA 3VN5A 1KYUA 1M5Q1 2DKDA 1KO9A 2MZ8A 1LWYA 3NA5A 3EAYA 1VTOA 5F9CA 2QLVA 4ROEB 3RPJA 2NOHA 3PDKA 1PCJX 2V92A 1RM1A 4DULA 3EIKA 2JHNA 1EUVA 2Z8UA 3PMGA 1KFQA 1KY6A 4EJZA 4BJUA 1KFIA 2NLVA 5JMVD 4PY5A 1T6AA 1WQAA 2FKFA 3OSEA 3OGDA 3C04A 2HKPA 1WJWA 4D7QA 2HZSA 3OCIA 1QNCA 2OOYA 3CW7A 1EBMA 2ZFDB 5KL0A 5IYCP 1YQMA 3TDHA 1PCMX 3SNSA 1YQRA 2NOEA 1TBPA 2FGTA 1YQLA 2IV8A 1QN8A 2YH5A 1KYFA 3HS8A 2JHJA 5EPCA 1NGMA 1MPGA 2NOFA 4TPSA 1QN9A 1QN6A 2H4LX 3D7QA 2LAEA 1JFIC 4D7RA 3CWTA 1N3AA 3HS9A 4RODB 3CWAA 5IYBP 1QN3A 1V5SA 1JDYA 3IH7A 2EIUA 2JOIA 2OOXA 2QREA 1NH2A 3OSTA
chains in the Genus database with same CATH topology
5JN5A 3OLPA 2Z0FA 2F7LA 2DKCA 5KL0A 3BKQX 4QG5A 1PCMX 1K2YX 4IL8A 3UW2A 1P5GX 5BMNA 2JPIA 2EHPA 1LXTA 3ENOC 4MRQA 5BMPA 1K35A 4HJHA 2DKDA 5EPCA 2H5AX 3NA5A 1P5DX 5F9CA 2H4LX 3RSMA 1VKLA 2FKMX 2DKAA 3I3WA 3PDKA 1PCJX 2FUVA 3ENCA 4WX8A 3PMGA 4WXAA 1KFQA 1C4GA 1JDYA 4BJUA 1KFIA 5JMVD 2EIUA 1C47A 1WQAA 2FKFA 5HSHA 3C04A 1TUOA 1WJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JN5 A;  3OLP A;  2Z0F A;  2F7L A;  2DKC A;  5KL0 A;  3BKQ X;  4QG5 A;  1PCM X;  1K2Y X;  4IL8 A;  3UW2 A;  1P5G X;  5BMN A;  2JPI A;  2EHP A;  1LXT A;  3ENO C;  4MRQ A;  5BMP A;  1K35 A;  4HJH A;  2DKD A;  5EPC A;  2H5A X;  3NA5 A;  1P5D X;  5F9C A;  2H4L X;  3RSM A;  1VKL A;  2FKM X;  2DKA A;  3I3W A;  3PDK A;  1PCJ X;  2FUV A;  3ENC A;  4WX8 A;  3PMG A;  4WXA A;  1KFQ A;  1C4G A;  1JDY A;  4BJU A;  1KFI A;  5JMV D;  2EIU A;  1C47 A;  1WQA A;  2FKF A;  5HSH A;  3C04 A;  1TUO A;  1WJW A; 
#chains in the Genus database with same CATH topology
 2VJ0 A;  4ROC B;  5JN5 A;  2D0B A;  3DPU A;  1E42 A;  1C9B B;  4QG5 A;  3KTU A;  3CVS A;  2HL9 A;  3UW2 A;  1P5G X;  1TBA B;  2NOZ A;  2JPI A;  1LXT A;  4MRQ A;  5BMP A;  1QNE A;  1N3C A;  3DPT A;  1LWW A;  1QTS A;  2H5A X;  1P5D X;  2PWW A;  1LWV A;  1UT7 A;  1MP9 A;  3RSM A;  1VKL A;  1PCZ A;  2EHB D;  2FKM X;  3TE5 A;  3CVT A;  3CWS A;  1PVS A;  2DKA A;  3I3W A;  3ENC A;  4EJY A;  4EAI A;  1KYD A;  4WX8 A;  1AIS A;  4WXA A;  3I0W A;  1QNA A;  3OH6 A;  4EAJ A;  4EAL A;  2G30 A;  2YA3 A;  3ULX A;  1QN5 A;  5IYD P;  1TUO A;  3N89 A;  4EAK A;  3OSM A;  4I8O A;  2R5X A;  2F7L A;  2O3O A;  2QRC A;  1N39 A;  2Y8Q A;  4B0A A;  4CFF A;  2QRD A;  1K2Y X;  2HL8 A;  4IL8 A;  3T4N A;  1DIZ A;  2IV9 A;  5BMN A;  1VOL B;  1QNB A;  2EHP A;  1J3M A;  1VOK A;  1K35 A;  1QN7 A;  1YTF A;  1QTP A;  4C7P A;  4HJH A;  1UT4 A;  5AN4 A;  2V9J A;  1VTL E;  3CWU A;  1M3Q A;  4EAG A;  1W80 A;  3D4V A;  2I5W A;  2HZM A;  2NWV A;  2QR1 A;  3I0X A;  2FUV A;  1KY7 A;  2D0A A;  2Y8L A;  1XSZ A;  2D0C A;  1D3U A;  1TGH A;  4Q11 A;  1C4G A;  2MJ7 A;  3H1Z A;  3ASM A;  1C47 A;  3OH9 A;  1M3H A;  2NOB A;  3F10 A;  5HSH A;  2NOI A;  2NOL A;  1R4X A;  3KRM A;  1CDW A;  3OLP A;  2Z0F A;  1YTB A;  3F0Z A;  1UL7 A;  2DKC A;  2XHI A;  1FN7 A;  3BKQ X;  1QN4 A;  2V8Q A;  1HU0 A;  1NVP A;  1B9K A;  1Q9U A;  2NVM A;  3OC3 C;  4WZS D;  1YQK A;  3ENO C;  1PZD A;  3VN5 A;  1KYU A;  1M5Q 1;  2DKD A;  1KO9 A;  2MZ8 A;  1LWY A;  3NA5 A;  3EAY A;  1VTO A;  5F9C A;  2QLV A;  4ROE B;  3RPJ A;  2NOH A;  3PDK A;  1PCJ X;  2V92 A;  1RM1 A;  4DUL A;  3EIK A;  2JHN A;  1EUV A;  2Z8U A;  3PMG A;  1KFQ A;  1KY6 A;  4EJZ A;  4BJU A;  1KFI A;  2NLV A;  5JMV D;  4PY5 A;  1T6A A;  1WQA A;  2FKF A;  3OSE A;  3OGD A;  3C04 A;  2HKP A;  1WJW A;  4D7Q A;  2HZS A;  3OCI A;  1QNC A;  2OOY A;  3CW7 A;  1EBM A;  2ZFD B;  5KL0 A;  5IYC P;  1YQM A;  3TDH A;  1PCM X;  3SNS A;  1YQR A;  2NOE A;  1TBP A;  2FGT A;  1YQL A;  2IV8 A;  1QN8 A;  2YH5 A;  1KYF A;  3HS8 A;  2JHJ A;  5EPC A;  1NGM A;  1MPG A;  2NOF A;  4TPS A;  1QN9 A;  1QN6 A;  2H4L X;  3D7Q A;  2LAE A;  1JFI C;  4D7R A;  3CWT A;  1N3A A;  3HS9 A;  4ROD B;  3CWA A;  5IYB P;  1QN3 A;  1V5S A;  1JDY A;  3IH7 A;  2EIU A;  2JOI A;  2OOX A;  2QRE A;  1NH2 A;  3OST A; 
#chains in the Genus database with same CATH homology
 5JN5 A;  3OLP A;  2Z0F A;  2F7L A;  2DKC A;  5KL0 A;  3BKQ X;  4QG5 A;  1PCM X;  1K2Y X;  4IL8 A;  3UW2 A;  1P5G X;  5BMN A;  2JPI A;  2EHP A;  1LXT A;  3ENO C;  4MRQ A;  5BMP A;  1K35 A;  4HJH A;  2DKD A;  5EPC A;  2H5A X;  3NA5 A;  1P5D X;  5F9C A;  2H4L X;  3RSM A;  1VKL A;  2FKM X;  2DKA A;  3I3W A;  3PDK A;  1PCJ X;  2FUV A;  3ENC A;  4WX8 A;  3PMG A;  4WXA A;  1KFQ A;  1C4G A;  1JDY A;  4BJU A;  1KFI A;  5JMV D;  2EIU A;  1C47 A;  1WQA A;  2FKF A;  5HSH A;  3C04 A;  1TUO A;  1WJW A; 
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similar chains in the pdb database (?% sequence similarity)

 
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