1VKLA

Rabbit muscle phosphoglucomutase
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PHOSPHOGLUCOMUTASE
publication title Structural changes at the metal ion binding site during the phosphoglucomutase reaction.
pubmed doi rcsb
molecule tags Phosphotransferase
total genus 192
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1996-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1vklA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1vklA01
2EIUA 1TUOA 3BKQX 5HSHA 1JDYA 3OLPA 1PCJX 2F7LA 4HJHA 3ENCA 4IL8A 1PCMX 2JPIA 5JMVD 5EPCA 1P5GX 3UW2A 2Z0FA 2FKFA 5F9CA 3ENOC 2DKCA 5BMPA 1K35A 5JN5A 1WJWA 4WXAA 4WX8A 2FUVA 2H5AX 1C47A 1KFIA 2DKAA 2FKMX 1P5DX 3C04A 3RSMA 4BJUA 5KL0A 4MRQA 3PMGA 1C4GA 2DKDA 3NA5A 1K2YX 3I3WA 1LXTA 4QG5A 1VKLA 3PDKA 5BMNA 2EHPA 1WQAA 1KFQA 2H4LX
chains in the Genus database with same CATH superfamily
2EIUA 1TUOA 1MP9A 2VJ0A 2NVMA 4D7RA 3CVSA 3OH6A 1DIZA 1PCZA 1QN9A 1NVPA 2JPIA 2PWWA 3CWUA 2HZSA 3ASMA 5AN4A 5EPCA 2Z0FA 1KY7A 2FKFA 2YA3A 1VTLE 2D0CA 2DKCA 4PY5A 2EHBD 3ULXA 4CFFA 1QNBA 1KY6A 5JN5A 3CWTA 2QRDA 3EIKA 1KFIA 1R4XA 1B9KA 1J3MA 1KO9A 1P5DX 2G30A 4BJUA 1QN3A 1LWVA 4MRQA 3HS8A 2Z8UA 3CVTA 2IV9A 1KYDA 3H1ZA 3PMGA 1Q9UA 2JOIA 1C4GA 1W80A 3OSEA 1K2YX 2NWVA 3F10A 3I3WA 2MJ7A 4RODB 1YQLA 1E42A 2EHPA 3DPTA 3OC3C 2IV8A 3OLPA 1HU0A 2JHJA 1KYFA 5HSHA 1QTSA 1YTBA 1JDYA 2QRCA 1PCJX 2F7LA 2ZFDB 1PCMX 5JMVD 2V92A 1D3UA 3T4NA 1M3QA 1K35A 1WJWA 3OCIA 1N3AA 1C47A 3I0XA 2DKAA 2NOIA 1YTFA 1N3CA 2HL9A 1QN8A 4B0AA 3OSMA 1YQRA 2V9JA 2NOHA 3DPUA 3D7QA 1CDWA 3D4VA 2DKDA 3NA5A 2QLVA 1EBMA 1LXTA 2QR1A 3PDKA 3KTUA 4TPSA 1TBAB 4Q11A 4EJYA 3OSTA 3BKQX 2HL8A 4WZSD 2NOLA 4EAIA 4HJHA 1QN5A 5IYBP 4I8OA 4IL8A 1VTOA 1QN4A 2XHIA 1LWWA 1MPGA 1C9BB 1P5GX 3UW2A 4EAKA 3HS9A 2FGTA 2YH5A 1T6AA 2I5WA 1UT4A 3CWAA 1PZDA 1QNEA 2FUVA 2H5AX 3N89A 1NH2A 1FN7A 2FKMX 2OOXA 1QN7A 3RSMA 3KRMA 1KYUA 2MZ8A 4D7QA 5KL0A 5IYCP 3OH9A 4ROCB 2NOZA 1RM1A 3TDHA 2NLVA 4QG5A 2NOEA 1VKLA 4C7PA 1TBPA 5BMNA 1YQMA 3I0WA 1LWYA 3CW7A 4EAJA 1UT7A 2HKPA 2LAEA 2H4LX 1EUVA 2V8QA 2Y8QA 2JHNA 3F0ZA 3IH7A 1JFIC 3OGDA 1QNCA 2O3OA 1N39A 4EAGA 3ENCA 3TE5A 3VN5A 1QTPA 5F9CA 3ENOC 2HZMA 1AISA 2D0BA 5BMPA 3SNSA 2NOBA 4WXAA 1M3HA 4WX8A 1QN6A 5IYDP 1VOKA 4DULA 1V5SA 4EJZA 1NGMA 3C04A 4EALA 2Y8LA 1VOLB 2NOFA 3RPJA 1M5Q1 1TGHA 2R5XA 2OOYA 1UL7A 2QREA 1PVSA 4ROEB 1XSZA 1QNAA 3CWSA 3EAYA 2D0AA 1WQAA 1KFQA 1YQKA
chains in the Genus database with same CATH topology
2EIUA 1TUOA 3BKQX 5HSHA 1JDYA 3OLPA 1PCJX 2F7LA 4HJHA 3ENCA 4IL8A 1PCMX 2JPIA 5JMVD 5EPCA 1P5GX 3UW2A 2Z0FA 2FKFA 5F9CA 3ENOC 2DKCA 5BMPA 1K35A 5JN5A 1WJWA 4WXAA 4WX8A 2FUVA 2H5AX 1C47A 1KFIA 2DKAA 2FKMX 1P5DX 3C04A 3RSMA 4BJUA 5KL0A 4MRQA 3PMGA 1C4GA 2DKDA 3NA5A 1K2YX 3I3WA 1LXTA 4QG5A 1VKLA 3PDKA 5BMNA 2EHPA 1WQAA 1KFQA 2H4LX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EIU A;  1TUO A;  3BKQ X;  5HSH A;  1JDY A;  3OLP A;  1PCJ X;  2F7L A;  4HJH A;  3ENC A;  4IL8 A;  1PCM X;  2JPI A;  5JMV D;  5EPC A;  1P5G X;  3UW2 A;  2Z0F A;  2FKF A;  5F9C A;  3ENO C;  2DKC A;  5BMP A;  1K35 A;  5JN5 A;  1WJW A;  4WXA A;  4WX8 A;  2FUV A;  2H5A X;  1C47 A;  1KFI A;  2DKA A;  2FKM X;  1P5D X;  3C04 A;  3RSM A;  4BJU A;  5KL0 A;  4MRQ A;  3PMG A;  1C4G A;  2DKD A;  3NA5 A;  1K2Y X;  3I3W A;  1LXT A;  4QG5 A;  1VKL A;  3PDK A;  5BMN A;  2EHP A;  1WQA A;  1KFQ A;  2H4L X; 
#chains in the Genus database with same CATH topology
 2EIU A;  1TUO A;  1MP9 A;  2VJ0 A;  2NVM A;  4D7R A;  3CVS A;  3OH6 A;  1DIZ A;  1PCZ A;  1QN9 A;  1NVP A;  2JPI A;  2PWW A;  3CWU A;  2HZS A;  3ASM A;  5AN4 A;  5EPC A;  2Z0F A;  1KY7 A;  2FKF A;  2YA3 A;  1VTL E;  2D0C A;  2DKC A;  4PY5 A;  2EHB D;  3ULX A;  4CFF A;  1QNB A;  1KY6 A;  5JN5 A;  3CWT A;  2QRD A;  3EIK A;  1KFI A;  1R4X A;  1B9K A;  1J3M A;  1KO9 A;  1P5D X;  2G30 A;  4BJU A;  1QN3 A;  1LWV A;  4MRQ A;  3HS8 A;  2Z8U A;  3CVT A;  2IV9 A;  1KYD A;  3H1Z A;  3PMG A;  1Q9U A;  2JOI A;  1C4G A;  1W80 A;  3OSE A;  1K2Y X;  2NWV A;  3F10 A;  3I3W A;  2MJ7 A;  4ROD B;  1YQL A;  1E42 A;  2EHP A;  3DPT A;  3OC3 C;  2IV8 A;  3OLP A;  1HU0 A;  2JHJ A;  1KYF A;  5HSH A;  1QTS A;  1YTB A;  1JDY A;  2QRC A;  1PCJ X;  2F7L A;  2ZFD B;  1PCM X;  5JMV D;  2V92 A;  1D3U A;  3T4N A;  1M3Q A;  1K35 A;  1WJW A;  3OCI A;  1N3A A;  1C47 A;  3I0X A;  2DKA A;  2NOI A;  1YTF A;  1N3C A;  2HL9 A;  1QN8 A;  4B0A A;  3OSM A;  1YQR A;  2V9J A;  2NOH A;  3DPU A;  3D7Q A;  1CDW A;  3D4V A;  2DKD A;  3NA5 A;  2QLV A;  1EBM A;  1LXT A;  2QR1 A;  3PDK A;  3KTU A;  4TPS A;  1TBA B;  4Q11 A;  4EJY A;  3OST A;  3BKQ X;  2HL8 A;  4WZS D;  2NOL A;  4EAI A;  4HJH A;  1QN5 A;  5IYB P;  4I8O A;  4IL8 A;  1VTO A;  1QN4 A;  2XHI A;  1LWW A;  1MPG A;  1C9B B;  1P5G X;  3UW2 A;  4EAK A;  3HS9 A;  2FGT A;  2YH5 A;  1T6A A;  2I5W A;  1UT4 A;  3CWA A;  1PZD A;  1QNE A;  2FUV A;  2H5A X;  3N89 A;  1NH2 A;  1FN7 A;  2FKM X;  2OOX A;  1QN7 A;  3RSM A;  3KRM A;  1KYU A;  2MZ8 A;  4D7Q A;  5KL0 A;  5IYC P;  3OH9 A;  4ROC B;  2NOZ A;  1RM1 A;  3TDH A;  2NLV A;  4QG5 A;  2NOE A;  1VKL A;  4C7P A;  1TBP A;  5BMN A;  1YQM A;  3I0W A;  1LWY A;  3CW7 A;  4EAJ A;  1UT7 A;  2HKP A;  2LAE A;  2H4L X;  1EUV A;  2V8Q A;  2Y8Q A;  2JHN A;  3F0Z A;  3IH7 A;  1JFI C;  3OGD A;  1QNC A;  2O3O A;  1N39 A;  4EAG A;  3ENC A;  3TE5 A;  3VN5 A;  1QTP A;  5F9C A;  3ENO C;  2HZM A;  1AIS A;  2D0B A;  5BMP A;  3SNS A;  2NOB A;  4WXA A;  1M3H A;  4WX8 A;  1QN6 A;  5IYD P;  1VOK A;  4DUL A;  1V5S A;  4EJZ A;  1NGM A;  3C04 A;  4EAL A;  2Y8L A;  1VOL B;  2NOF A;  3RPJ A;  1M5Q 1;  1TGH A;  2R5X A;  2OOY A;  1UL7 A;  2QRE A;  1PVS A;  4ROE B;  1XSZ A;  1QNA A;  3CWS A;  3EAY A;  2D0A A;  1WQA A;  1KFQ A;  1YQK A; 
#chains in the Genus database with same CATH homology
 2EIU A;  1TUO A;  3BKQ X;  5HSH A;  1JDY A;  3OLP A;  1PCJ X;  2F7L A;  4HJH A;  3ENC A;  4IL8 A;  1PCM X;  2JPI A;  5JMV D;  5EPC A;  1P5G X;  3UW2 A;  2Z0F A;  2FKF A;  5F9C A;  3ENO C;  2DKC A;  5BMP A;  1K35 A;  5JN5 A;  1WJW A;  4WXA A;  4WX8 A;  2FUV A;  2H5A X;  1C47 A;  1KFI A;  2DKA A;  2FKM X;  1P5D X;  3C04 A;  3RSM A;  4BJU A;  5KL0 A;  4MRQ A;  3PMG A;  1C4G A;  2DKD A;  3NA5 A;  1K2Y X;  3I3W A;  1LXT A;  4QG5 A;  1VKL A;  3PDK A;  5BMN A;  2EHP A;  1WQA A;  1KFQ A;  2H4L X; 
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similar chains in the pdb database (?% sequence similarity)

 
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