2F7LA

Crystal structure of sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
455
structure length
455
Chain Sequence
MGKLFGTDGVRGIVNKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRREKENEIEDLFFTERFNTIEWSSLTTEVKREDRVISTYVNGILSHVDIEKIKKKNYKVLIDPANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENVSSAELFDRLPKYYLVKTKVDLKPGLMVEEIYKKILEVYSTSSVKAITIDGVKIIGKDFWFLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVEGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 455aa long hypothetical phospho-sugar mutase
publication title Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
rcsb
source organism Sulfolobus tokodaii
total genus 156
structure length 455
sequence length 455
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2005-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2f7lA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA03
2FUVA 4IL8A 5F9CA 2DKCA 1PCJX 3ENOC 5HSHA 4HJHA 5BMPA 1P5DX 5EPCA 1C4GA 1KFQA 3C04A 1C47A 2Z0FA 5JN5A 2EHPA 3UW2A 1PCMX 2JPIA 2EIUA 5JMVD 2FKFA 4QG5A 1KFIA 1WJWA 1P5GX 3OLPA 4WX8A 3RSMA 4WXAA 2H4LX 3BKQX 2H5AX 2FKMX 3PMGA 4BJUA 3PDKA 3NA5A 3ENCA 4MRQA 1LXTA 1TUOA 1JDYA 5KL0A 2F7LA 1K35A 5BMNA 2DKDA 2DKAA 1VKLA 1K2YX 3I3WA 1WQAA
chains in the Genus database with same CATH superfamily
1EBMA 2IV9A 1PCJX 3ENOC 1M5Q1 5BMPA 1YQRA 4DULA 3H1ZA 1MP9A 2V8QA 1YTFA 1KFQA 3D7QA 3DPTA 1FN7A 2MZ8A 2QREA 3DPUA 5JN5A 3OH9A 3F0ZA 2HZSA 5AN4A 3UW2A 1JFIC 1QN5A 1QNAA 2PWWA 4CFFA 2QRDA 1RM1A 2EIUA 3OSEA 4QG5A 3KRMA 2G30A 2NOFA 3BKQX 1QNEA 1CDWA 1LWYA 2YH5A 1XSZA 1LXTA 2JHJA 2EHBD 1JDYA 3OSTA 2NOLA 1N39A 3TDHA 3TE5A 1N3AA 2DKDA 1VKLA 1KYFA 1KO9A 4EAKA 3I3WA 1YQKA 1M3QA 2DKCA 1NVPA 4Q11A 1UT7A 1QN3A 2I5WA 3CW7A 1Q9UA 2Y8QA 1PZDA 5EPCA 1C4GA 3CWTA 3KTUA 1QN6A 2NOIA 1KY7A 3OH6A 1LWVA 2JPIA 2NOBA 2D0AA 1UT4A 2HKPA 2QLVA 5JMVD 3CVTA 3CWSA 1TBPA 2FKFA 1J3MA 1KFIA 1P5GX 1QTPA 1WJWA 2NLVA 3OLPA 1QNCA 1DIZA 1QN8A 3ULXA 4EAIA 2H4LX 1AISA 2HZMA 1QN7A 2H5AX 4EJYA 1KY6A 4BJUA 1PVSA 4I8OA 2O3OA 2HL8A 1E42A 4MRQA 4B0AA 1TUOA 2MJ7A 1KYDA 1VOLB 3N89A 5KL0A 1T6AA 3OC3C 4ROEB 4WZSD 1VTLE 1D3UA 2FKMX 1YQMA 1K2YX 3EIKA 1C47A 2JHNA 2FUVA 5F9CA 2V9JA 1HU0A 5HSHA 2D0BA 4HJHA 1P5DX 5IYBP 1TGHA 4EAJA 2QRCA 3D4VA 1NH2A 2D0CA 3C04A 3CVSA 4RODB 1N3CA 1VOKA 2JOIA 1M3HA 3I0XA 2IV8A 4EAGA 1R4XA 3EAYA 1YQLA 3HS8A 4WX8A 3RSMA 4WXAA 3RPJA 3PMGA 2FGTA 3ENCA 3SNSA 3I0WA 4C7PA 2XHIA 2LAEA 1NGMA 1B9KA 3CWUA 5IYDP 2HL9A 3CWAA 1K35A 4D7RA 5BMNA 5IYCP 2ZFDB 2NWVA 1QN4A 1V5SA 1KYUA 2OOXA 4IL8A 4PY5A 1LWWA 2YA3A 1PCZA 2QR1A 2Y8LA 4TPSA 2VJ0A 4ROCB 2Z0FA 2EHPA 2R5XA 3T4NA 1PCMX 3HS9A 3VN5A 2V92A 2NOZA 2NVMA 1TBAB 1QTSA 4EJZA 3ASMA 2Z8UA 1C9BB 3OCIA 1QN9A 1YTBA 3F10A 2OOYA 3OSMA 3PDKA 1EUVA 3NA5A 1VTOA 1QNBA 1MPGA 4EALA 2NOHA 3OGDA 2F7LA 1UL7A 4D7QA 1W80A 3IH7A 2NOEA 2DKAA 1WQAA
chains in the Genus database with same CATH topology
2FUVA 4IL8A 5F9CA 2DKCA 1PCJX 3ENOC 5HSHA 4HJHA 5BMPA 1P5DX 5EPCA 1C4GA 1KFQA 3C04A 1C47A 2Z0FA 5JN5A 2EHPA 3UW2A 1PCMX 2JPIA 2EIUA 5JMVD 2FKFA 4QG5A 1KFIA 1WJWA 1P5GX 3OLPA 4WX8A 3RSMA 4WXAA 2H4LX 3BKQX 2H5AX 2FKMX 3PMGA 4BJUA 3PDKA 3NA5A 3ENCA 4MRQA 1LXTA 1TUOA 1JDYA 5KL0A 2F7LA 1K35A 5BMNA 2DKDA 2DKAA 1VKLA 1K2YX 3I3WA 1WQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUV A;  4IL8 A;  5F9C A;  2DKC A;  1PCJ X;  3ENO C;  5HSH A;  4HJH A;  5BMP A;  1P5D X;  5EPC A;  1C4G A;  1KFQ A;  3C04 A;  1C47 A;  2Z0F A;  5JN5 A;  2EHP A;  3UW2 A;  1PCM X;  2JPI A;  2EIU A;  5JMV D;  2FKF A;  4QG5 A;  1KFI A;  1WJW A;  1P5G X;  3OLP A;  4WX8 A;  3RSM A;  4WXA A;  2H4L X;  3BKQ X;  2H5A X;  2FKM X;  3PMG A;  4BJU A;  3PDK A;  3NA5 A;  3ENC A;  4MRQ A;  1LXT A;  1TUO A;  1JDY A;  5KL0 A;  2F7L A;  1K35 A;  5BMN A;  2DKD A;  2DKA A;  1VKL A;  1K2Y X;  3I3W A;  1WQA A; 
#chains in the Genus database with same CATH topology
 1EBM A;  2IV9 A;  1PCJ X;  3ENO C;  1M5Q 1;  5BMP A;  1YQR A;  4DUL A;  3H1Z A;  1MP9 A;  2V8Q A;  1YTF A;  1KFQ A;  3D7Q A;  3DPT A;  1FN7 A;  2MZ8 A;  2QRE A;  3DPU A;  5JN5 A;  3OH9 A;  3F0Z A;  2HZS A;  5AN4 A;  3UW2 A;  1JFI C;  1QN5 A;  1QNA A;  2PWW A;  4CFF A;  2QRD A;  1RM1 A;  2EIU A;  3OSE A;  4QG5 A;  3KRM A;  2G30 A;  2NOF A;  3BKQ X;  1QNE A;  1CDW A;  1LWY A;  2YH5 A;  1XSZ A;  1LXT A;  2JHJ A;  2EHB D;  1JDY A;  3OST A;  2NOL A;  1N39 A;  3TDH A;  3TE5 A;  1N3A A;  2DKD A;  1VKL A;  1KYF A;  1KO9 A;  4EAK A;  3I3W A;  1YQK A;  1M3Q A;  2DKC A;  1NVP A;  4Q11 A;  1UT7 A;  1QN3 A;  2I5W A;  3CW7 A;  1Q9U A;  2Y8Q A;  1PZD A;  5EPC A;  1C4G A;  3CWT A;  3KTU A;  1QN6 A;  2NOI A;  1KY7 A;  3OH6 A;  1LWV A;  2JPI A;  2NOB A;  2D0A A;  1UT4 A;  2HKP A;  2QLV A;  5JMV D;  3CVT A;  3CWS A;  1TBP A;  2FKF A;  1J3M A;  1KFI A;  1P5G X;  1QTP A;  1WJW A;  2NLV A;  3OLP A;  1QNC A;  1DIZ A;  1QN8 A;  3ULX A;  4EAI A;  2H4L X;  1AIS A;  2HZM A;  1QN7 A;  2H5A X;  4EJY A;  1KY6 A;  4BJU A;  1PVS A;  4I8O A;  2O3O A;  2HL8 A;  1E42 A;  4MRQ A;  4B0A A;  1TUO A;  2MJ7 A;  1KYD A;  1VOL B;  3N89 A;  5KL0 A;  1T6A A;  3OC3 C;  4ROE B;  4WZS D;  1VTL E;  1D3U A;  2FKM X;  1YQM A;  1K2Y X;  3EIK A;  1C47 A;  2JHN A;  2FUV A;  5F9C A;  2V9J A;  1HU0 A;  5HSH A;  2D0B A;  4HJH A;  1P5D X;  5IYB P;  1TGH A;  4EAJ A;  2QRC A;  3D4V A;  1NH2 A;  2D0C A;  3C04 A;  3CVS A;  4ROD B;  1N3C A;  1VOK A;  2JOI A;  1M3H A;  3I0X A;  2IV8 A;  4EAG A;  1R4X A;  3EAY A;  1YQL A;  3HS8 A;  4WX8 A;  3RSM A;  4WXA A;  3RPJ A;  3PMG A;  2FGT A;  3ENC A;  3SNS A;  3I0W A;  4C7P A;  2XHI A;  2LAE A;  1NGM A;  1B9K A;  3CWU A;  5IYD P;  2HL9 A;  3CWA A;  1K35 A;  4D7R A;  5BMN A;  5IYC P;  2ZFD B;  2NWV A;  1QN4 A;  1V5S A;  1KYU A;  2OOX A;  4IL8 A;  4PY5 A;  1LWW A;  2YA3 A;  1PCZ A;  2QR1 A;  2Y8L A;  4TPS A;  2VJ0 A;  4ROC B;  2Z0F A;  2EHP A;  2R5X A;  3T4N A;  1PCM X;  3HS9 A;  3VN5 A;  2V92 A;  2NOZ A;  2NVM A;  1TBA B;  1QTS A;  4EJZ A;  3ASM A;  2Z8U A;  1C9B B;  3OCI A;  1QN9 A;  1YTB A;  3F10 A;  2OOY A;  3OSM A;  3PDK A;  1EUV A;  3NA5 A;  1VTO A;  1QNB A;  1MPG A;  4EAL A;  2NOH A;  3OGD A;  2F7L A;  1UL7 A;  4D7Q A;  1W80 A;  3IH7 A;  2NOE A;  2DKA A;  1WQA A; 
#chains in the Genus database with same CATH homology
 2FUV A;  4IL8 A;  5F9C A;  2DKC A;  1PCJ X;  3ENO C;  5HSH A;  4HJH A;  5BMP A;  1P5D X;  5EPC A;  1C4G A;  1KFQ A;  3C04 A;  1C47 A;  2Z0F A;  5JN5 A;  2EHP A;  3UW2 A;  1PCM X;  2JPI A;  2EIU A;  5JMV D;  2FKF A;  4QG5 A;  1KFI A;  1WJW A;  1P5G X;  3OLP A;  4WX8 A;  3RSM A;  4WXA A;  2H4L X;  3BKQ X;  2H5A X;  2FKM X;  3PMG A;  4BJU A;  3PDK A;  3NA5 A;  3ENC A;  4MRQ A;  1LXT A;  1TUO A;  1JDY A;  5KL0 A;  2F7L A;  1K35 A;  5BMN A;  2DKD A;  2DKA A;  1VKL A;  1K2Y X;  3I3W A;  1WQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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