2F7LA

Crystal structure of sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
455
structure length
455
Chain Sequence
MGKLFGTDGVRGIVNKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRREKENEIEDLFFTERFNTIEWSSLTTEVKREDRVISTYVNGILSHVDIEKIKKKNYKVLIDPANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENVSSAELFDRLPKYYLVKTKVDLKPGLMVEEIYKKILEVYSTSSVKAITIDGVKIIGKDFWFLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVEGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 455aa long hypothetical phospho-sugar mutase
publication title Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
rcsb
source organism Sulfolobus tokodaii
molecule tags Isomerase
total genus 156
structure length 455
sequence length 455
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2005-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2f7lA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA03
1K2YX 1KFQA 5BMPA 3PDKA 5F9CA 1WQAA 4HJHA 3UW2A 2FUVA 1PCMX 4IL8A 1PCJX 2H5AX 3PMGA 2Z0FA 5EPCA 1WJWA 4QG5A 1JDYA 5JN5A 2DKAA 3ENOC 1P5GX 2FKFA 3NA5A 1C4GA 2FKMX 5JMVD 1C47A 1LXTA 3BKQX 5KL0A 4BJUA 4MRQA 5HSHA 1VKLA 2DKDA 4WXAA 3I3WA 3ENCA 3RSMA 2DKCA 2H4LX 2JPIA 1P5DX 2EHPA 5BMNA 2F7LA 4WX8A 3OLPA 1KFIA 3C04A 1K35A 2EIUA 1TUOA
chains in the Genus database with same CATH superfamily
1K2YX 1KFQA 2G30A 2V8QA 1UT7A 1UT4A 1DIZA 4EJYA 3I0XA 5AN4A 1KY6A 5EPCA 2Z8UA 1QNEA 2NOBA 1NGMA 1KY7A 1AISA 4ROEB 3I0WA 4PY5A 1M5Q1 4BJUA 1VTOA 1HU0A 3I3WA 1E42A 1VOKA 3CWAA 3OH6A 5BMNA 2F7LA 1QN7A 2V92A 4EJZA 2V9JA 3EIKA 1N3AA 2NOZA 1KYDA 3HS8A 3OGDA 4D7RA 1N39A 2D0BA 3H1ZA 3VN5A 2QRCA 3F10A 3OSEA 2LAEA 3PDKA 4HJHA 3UW2A 2FUVA 3DPTA 3KRMA 1LWWA 4EAGA 2QRDA 3D4VA 1QN3A 4WZSD 2OOYA 2D0AA 1WJWA 4TPSA 1JDYA 3DPUA 4Q11A 3SNSA 3ENOC 1P5GX 2FKFA 1KYFA 3D7QA 1C4GA 3CWUA 2YH5A 2MJ7A 3OC3C 5JMVD 1C47A 1LXTA 1MPGA 1TBPA 5KL0A 4MRQA 2IV8A 3CVTA 1VKLA 1EUVA 1M3QA 1YQRA 1KYUA 3ENCA 2DKCA 2JOIA 2XHIA 2JPIA 3OH9A 3CVSA 2QLVA 1QN5A 4EAIA 1QNAA 1VOLB 2I5WA 2EHPA 1CDWA 1KFIA 1K35A 2EIUA 1B9KA 4IL8A 2D0CA 4EAJA 1M3HA 3RPJA 2JHNA 2NOFA 1W80A 1WQAA 2O3OA 1N3CA 1PCMX 3F0ZA 2FGTA 4EAKA 2H5AX 3PMGA 2NOHA 5IYBP 1MP9A 2Z0FA 1QTSA 4B0AA 5JN5A 2DKAA 2YA3A 1LWVA 1EBMA 1T6AA 2FKMX 1XSZA 4ROCB 1PVSA 1YQMA 1YTFA 3CWTA 2PWWA 5HSHA 4WXAA 1LWYA 1NH2A 1PZDA 3TE5A 3RSMA 3ASMA 1NVPA 1C9BB 1RM1A 1TBAB 2H4LX 1R4XA 3OCIA 3EAYA 1QNCA 2NVMA 2HKPA 4WX8A 3OLPA 2Y8QA 2QR1A 1Q9UA 2EHBD 2OOXA 3N89A 2HL8A 1TUOA 2ZFDB 3HS9A 3OSMA 1QN8A 2NLVA 1UL7A 3OSTA 5IYDP 1FN7A 1QNBA 2JHJA 5BMPA 5F9CA 3CWSA 2NOEA 1J3MA 1PCJX 1YQKA 1QTPA 2HZMA 4I8OA 2MZ8A 4QG5A 4CFFA 1VTLE 1YQLA 3NA5A 1QN6A 2QREA 2Y8LA 2IV9A 5IYCP 2NOIA 3BKQX 4EALA 4D7QA 2NWVA 2R5XA 2DKDA 3ULXA 1V5SA 4RODB 3IH7A 3T4NA 3CW7A 1KO9A 1PCZA 3KTUA 2HZSA 1P5DX 3TDHA 1TGHA 4DULA 2NOLA 1QN4A 2HL9A 3C04A 1QN9A 1YTBA 4C7PA 2VJ0A 1JFIC 1D3UA
chains in the Genus database with same CATH topology
1K2YX 1KFQA 5BMPA 3PDKA 5F9CA 1WQAA 4HJHA 3UW2A 2FUVA 1PCMX 4IL8A 1PCJX 2H5AX 3PMGA 2Z0FA 5EPCA 1WJWA 4QG5A 1JDYA 5JN5A 2DKAA 3ENOC 1P5GX 2FKFA 3NA5A 1C4GA 2FKMX 5JMVD 1C47A 1LXTA 3BKQX 5KL0A 4BJUA 4MRQA 5HSHA 1VKLA 2DKDA 4WXAA 3I3WA 3ENCA 3RSMA 2DKCA 2H4LX 2JPIA 1P5DX 2EHPA 5BMNA 2F7LA 4WX8A 3OLPA 1KFIA 3C04A 1K35A 2EIUA 1TUOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K2Y X;  1KFQ A;  5BMP A;  3PDK A;  5F9C A;  1WQA A;  4HJH A;  3UW2 A;  2FUV A;  1PCM X;  4IL8 A;  1PCJ X;  2H5A X;  3PMG A;  2Z0F A;  5EPC A;  1WJW A;  4QG5 A;  1JDY A;  5JN5 A;  2DKA A;  3ENO C;  1P5G X;  2FKF A;  3NA5 A;  1C4G A;  2FKM X;  5JMV D;  1C47 A;  1LXT A;  3BKQ X;  5KL0 A;  4BJU A;  4MRQ A;  5HSH A;  1VKL A;  2DKD A;  4WXA A;  3I3W A;  3ENC A;  3RSM A;  2DKC A;  2H4L X;  2JPI A;  1P5D X;  2EHP A;  5BMN A;  2F7L A;  4WX8 A;  3OLP A;  1KFI A;  3C04 A;  1K35 A;  2EIU A;  1TUO A; 
#chains in the Genus database with same CATH topology
 1K2Y X;  1KFQ A;  2G30 A;  2V8Q A;  1UT7 A;  1UT4 A;  1DIZ A;  4EJY A;  3I0X A;  5AN4 A;  1KY6 A;  5EPC A;  2Z8U A;  1QNE A;  2NOB A;  1NGM A;  1KY7 A;  1AIS A;  4ROE B;  3I0W A;  4PY5 A;  1M5Q 1;  4BJU A;  1VTO A;  1HU0 A;  3I3W A;  1E42 A;  1VOK A;  3CWA A;  3OH6 A;  5BMN A;  2F7L A;  1QN7 A;  2V92 A;  4EJZ A;  2V9J A;  3EIK A;  1N3A A;  2NOZ A;  1KYD A;  3HS8 A;  3OGD A;  4D7R A;  1N39 A;  2D0B A;  3H1Z A;  3VN5 A;  2QRC A;  3F10 A;  3OSE A;  2LAE A;  3PDK A;  4HJH A;  3UW2 A;  2FUV A;  3DPT A;  3KRM A;  1LWW A;  4EAG A;  2QRD A;  3D4V A;  1QN3 A;  4WZS D;  2OOY A;  2D0A A;  1WJW A;  4TPS A;  1JDY A;  3DPU A;  4Q11 A;  3SNS A;  3ENO C;  1P5G X;  2FKF A;  1KYF A;  3D7Q A;  1C4G A;  3CWU A;  2YH5 A;  2MJ7 A;  3OC3 C;  5JMV D;  1C47 A;  1LXT A;  1MPG A;  1TBP A;  5KL0 A;  4MRQ A;  2IV8 A;  3CVT A;  1VKL A;  1EUV A;  1M3Q A;  1YQR A;  1KYU A;  3ENC A;  2DKC A;  2JOI A;  2XHI A;  2JPI A;  3OH9 A;  3CVS A;  2QLV A;  1QN5 A;  4EAI A;  1QNA A;  1VOL B;  2I5W A;  2EHP A;  1CDW A;  1KFI A;  1K35 A;  2EIU A;  1B9K A;  4IL8 A;  2D0C A;  4EAJ A;  1M3H A;  3RPJ A;  2JHN A;  2NOF A;  1W80 A;  1WQA A;  2O3O A;  1N3C A;  1PCM X;  3F0Z A;  2FGT A;  4EAK A;  2H5A X;  3PMG A;  2NOH A;  5IYB P;  1MP9 A;  2Z0F A;  1QTS A;  4B0A A;  5JN5 A;  2DKA A;  2YA3 A;  1LWV A;  1EBM A;  1T6A A;  2FKM X;  1XSZ A;  4ROC B;  1PVS A;  1YQM A;  1YTF A;  3CWT A;  2PWW A;  5HSH A;  4WXA A;  1LWY A;  1NH2 A;  1PZD A;  3TE5 A;  3RSM A;  3ASM A;  1NVP A;  1C9B B;  1RM1 A;  1TBA B;  2H4L X;  1R4X A;  3OCI A;  3EAY A;  1QNC A;  2NVM A;  2HKP A;  4WX8 A;  3OLP A;  2Y8Q A;  2QR1 A;  1Q9U A;  2EHB D;  2OOX A;  3N89 A;  2HL8 A;  1TUO A;  2ZFD B;  3HS9 A;  3OSM A;  1QN8 A;  2NLV A;  1UL7 A;  3OST A;  5IYD P;  1FN7 A;  1QNB A;  2JHJ A;  5BMP A;  5F9C A;  3CWS A;  2NOE A;  1J3M A;  1PCJ X;  1YQK A;  1QTP A;  2HZM A;  4I8O A;  2MZ8 A;  4QG5 A;  4CFF A;  1VTL E;  1YQL A;  3NA5 A;  1QN6 A;  2QRE A;  2Y8L A;  2IV9 A;  5IYC P;  2NOI A;  3BKQ X;  4EAL A;  4D7Q A;  2NWV A;  2R5X A;  2DKD A;  3ULX A;  1V5S A;  4ROD B;  3IH7 A;  3T4N A;  3CW7 A;  1KO9 A;  1PCZ A;  3KTU A;  2HZS A;  1P5D X;  3TDH A;  1TGH A;  4DUL A;  2NOL A;  1QN4 A;  2HL9 A;  3C04 A;  1QN9 A;  1YTB A;  4C7P A;  2VJ0 A;  1JFI C;  1D3U A; 
#chains in the Genus database with same CATH homology
 1K2Y X;  1KFQ A;  5BMP A;  3PDK A;  5F9C A;  1WQA A;  4HJH A;  3UW2 A;  2FUV A;  1PCM X;  4IL8 A;  1PCJ X;  2H5A X;  3PMG A;  2Z0F A;  5EPC A;  1WJW A;  4QG5 A;  1JDY A;  5JN5 A;  2DKA A;  3ENO C;  1P5G X;  2FKF A;  3NA5 A;  1C4G A;  2FKM X;  5JMV D;  1C47 A;  1LXT A;  3BKQ X;  5KL0 A;  4BJU A;  4MRQ A;  5HSH A;  1VKL A;  2DKD A;  4WXA A;  3I3W A;  3ENC A;  3RSM A;  2DKC A;  2H4L X;  2JPI A;  1P5D X;  2EHP A;  5BMN A;  2F7L A;  4WX8 A;  3OLP A;  1KFI A;  3C04 A;  1K35 A;  2EIU A;  1TUO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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