2F7LA

Crystal structure of sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
455
structure length
455
Chain Sequence
MGKLFGTDGVRGIVNKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRREKENEIEDLFFTERFNTIEWSSLTTEVKREDRVISTYVNGILSHVDIEKIKKKNYKVLIDPANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENVSSAELFDRLPKYYLVKTKVDLKPGLMVEEIYKKILEVYSTSSVKAITIDGVKIIGKDFWFLVRKSGTEPIIRIMAEAKDENVANNLVNELKKIVEGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
source organism Sulfolobus tokodaii
publication title Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase
rcsb
molecule keywords 455aa long hypothetical phospho-sugar mutase
total genus 156
structure length 455
sequence length 455
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2005-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2f7lA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2f7lA03
2JPIA 2EHPA 3I3WA 1K2YX 1KFIA 3PMGA 1JDYA 5JN5A 1WJWA 3ENCA 2F7LA 5EPCA 4QG5A 3PDKA 5BMNA 5HSHA 1PCJX 1P5DX 2Z0FA 2EIUA 4MRQA 3UW2A 3C04A 1K35A 2H4LX 1LXTA 3BKQX 5KL0A 3NA5A 4WX8A 1C47A 1VKLA 4WXAA 4BJUA 3RSMA 1WQAA 1P5GX 1PCMX 5JMVD 2FKFA 2DKDA 5BMPA 2DKCA 5F9CA 3OLPA 4IL8A 3ENOC 2H5AX 1TUOA 2FKMX 1C4GA 2FUVA 1KFQA 2DKAA 4HJHA
chains in the Genus database with same CATH superfamily
3EAYA 1NGMA 1K2YX 1YQRA 1LWVA 2Z8UA 2QRCA 5JN5A 2R5XA 3N89A 3EIKA 2F7LA 1JFIC 5HSHA 1UT4A 4MRQA 3C04A 1QN8A 3CW7A 5IYBP 1TGHA 1N3CA 3SNSA 2ZFDB 3RSMA 1CDWA 1QN4A 1J3MA 2DKDA 2DKCA 1TBAB 2YA3A 1PZDA 1PVSA 3I0WA 3KRMA 1QN9A 3ASMA 3OCIA 4RODB 2FKMX 4EAKA 3VN5A 1B9KA 3CWTA 1KFQA 2DKAA 4EAGA 5F9CA 2JPIA 1M5Q1 4ROCB 3PMGA 3DPUA 1Q9UA 3OSEA 3OH6A 1NH2A 1KYUA 3PDKA 1EUVA 3OSMA 3D4VA 2Z0FA 1N39A 2EIUA 2NOLA 2NLVA 2JHNA 4C7PA 1LXTA 3NA5A 1C47A 1T6AA 1EBMA 4EJYA 4WZSD 3KTUA 5JMVD 4ROEB 3CVSA 1LWWA 4D7QA 1HU0A 2NVMA 3T4NA 1QNBA 1QNCA 5BMPA 2HZSA 1M3QA 3OLPA 3ENOC 1YQLA 2H5AX 1QN7A 2NOEA 2O3OA 1YTFA 3DPTA 3IH7A 1AISA 3BKQX 2NOBA 3F0ZA 1MP9A 4EALA 3I3WA 2D0CA 2HL8A 2IV9A 2VJ0A 1KFIA 1R4XA 1JDYA 2V9JA 3CWSA 2Y8LA 4TPSA 2IV8A 5EPCA 1QNAA 4QG5A 1QN6A 5BMNA 2QREA 4CFFA 3OH9A 1D3UA 1UL7A 1PCJX 1P5DX 4Q11A 1DIZA 3UW2A 1FN7A 3CVTA 1LWYA 1PCZA 2QLVA 1YQKA 1KO9A 2D0BA 1VKLA 2PWWA 4BJUA 2EHBD 2JOIA 5IYDP 1P5GX 2QRDA 3RPJA 1UT7A 1KY7A 2FKFA 2MJ7A 1RM1A 1N3AA 2HKPA 4DULA 1KY6A 2V8QA 1QN5A 2NOIA 3OC3C 4I8OA 3CWAA 2NOZA 1YQMA 2FUVA 4EJZA 2LAEA 2HZMA 1VOKA 1QN3A 3TE5A 2JHJA 2I5WA 4PY5A 2YH5A 2QR1A 1WJWA 3HS8A 1YTBA 3ENCA 4EAIA 2HL9A 2MZ8A 1V5SA 1C9BB 2NOHA 2G30A 4D7RA 1QTSA 2FGTA 3D7QA 1VOLB 3F10A 1QTPA 1TBPA 1VTLE 2D0AA 1K35A 1KYFA 2H4LX 2NOFA 3I0XA 5KL0A 3CWUA 3H1ZA 4WX8A 2OOYA 3ULXA 1XSZA 4WXAA 4B0AA 1WQAA 1PCMX 5AN4A 1NVPA 2V92A 2Y8QA 4EAJA 3TDHA 2NWVA 5IYCP 1M3HA 4IL8A 2XHIA 1VTOA 1W80A 2OOXA 1MPGA 3OSTA 1TUOA 3HS9A 3OGDA 1C4GA 1KYDA 1E42A 1QNEA 2EHPA 4HJHA
chains in the Genus database with same CATH topology
2JPIA 2EHPA 3I3WA 1K2YX 1KFIA 3PMGA 1JDYA 5JN5A 1WJWA 3ENCA 2F7LA 5EPCA 4QG5A 3PDKA 5BMNA 5HSHA 1PCJX 1P5DX 2Z0FA 2EIUA 4MRQA 3UW2A 3C04A 1K35A 2H4LX 1LXTA 3BKQX 5KL0A 3NA5A 4WX8A 1C47A 1VKLA 4WXAA 4BJUA 3RSMA 1WQAA 1P5GX 1PCMX 5JMVD 2FKFA 2DKDA 5BMPA 2DKCA 5F9CA 3OLPA 4IL8A 3ENOC 2H5AX 1TUOA 2FKMX 1C4GA 2FUVA 1KFQA 2DKAA 4HJHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JPI A;  2EHP A;  3I3W A;  1K2Y X;  1KFI A;  3PMG A;  1JDY A;  5JN5 A;  1WJW A;  3ENC A;  2F7L A;  5EPC A;  4QG5 A;  3PDK A;  5BMN A;  5HSH A;  1PCJ X;  1P5D X;  2Z0F A;  2EIU A;  4MRQ A;  3UW2 A;  3C04 A;  1K35 A;  2H4L X;  1LXT A;  3BKQ X;  5KL0 A;  3NA5 A;  4WX8 A;  1C47 A;  1VKL A;  4WXA A;  4BJU A;  3RSM A;  1WQA A;  1P5G X;  1PCM X;  5JMV D;  2FKF A;  2DKD A;  5BMP A;  2DKC A;  5F9C A;  3OLP A;  4IL8 A;  3ENO C;  2H5A X;  1TUO A;  2FKM X;  1C4G A;  2FUV A;  1KFQ A;  2DKA A;  4HJH A; 
#chains in the Genus database with same CATH topology
 3EAY A;  1NGM A;  1K2Y X;  1YQR A;  1LWV A;  2Z8U A;  2QRC A;  5JN5 A;  2R5X A;  3N89 A;  3EIK A;  2F7L A;  1JFI C;  5HSH A;  1UT4 A;  4MRQ A;  3C04 A;  1QN8 A;  3CW7 A;  5IYB P;  1TGH A;  1N3C A;  3SNS A;  2ZFD B;  3RSM A;  1CDW A;  1QN4 A;  1J3M A;  2DKD A;  2DKC A;  1TBA B;  2YA3 A;  1PZD A;  1PVS A;  3I0W A;  3KRM A;  1QN9 A;  3ASM A;  3OCI A;  4ROD B;  2FKM X;  4EAK A;  3VN5 A;  1B9K A;  3CWT A;  1KFQ A;  2DKA A;  4EAG A;  5F9C A;  2JPI A;  1M5Q 1;  4ROC B;  3PMG A;  3DPU A;  1Q9U A;  3OSE A;  3OH6 A;  1NH2 A;  1KYU A;  3PDK A;  1EUV A;  3OSM A;  3D4V A;  2Z0F A;  1N39 A;  2EIU A;  2NOL A;  2NLV A;  2JHN A;  4C7P A;  1LXT A;  3NA5 A;  1C47 A;  1T6A A;  1EBM A;  4EJY A;  4WZS D;  3KTU A;  5JMV D;  4ROE B;  3CVS A;  1LWW A;  4D7Q A;  1HU0 A;  2NVM A;  3T4N A;  1QNB A;  1QNC A;  5BMP A;  2HZS A;  1M3Q A;  3OLP A;  3ENO C;  1YQL A;  2H5A X;  1QN7 A;  2NOE A;  2O3O A;  1YTF A;  3DPT A;  3IH7 A;  1AIS A;  3BKQ X;  2NOB A;  3F0Z A;  1MP9 A;  4EAL A;  3I3W A;  2D0C A;  2HL8 A;  2IV9 A;  2VJ0 A;  1KFI A;  1R4X A;  1JDY A;  2V9J A;  3CWS A;  2Y8L A;  4TPS A;  2IV8 A;  5EPC A;  1QNA A;  4QG5 A;  1QN6 A;  5BMN A;  2QRE A;  4CFF A;  3OH9 A;  1D3U A;  1UL7 A;  1PCJ X;  1P5D X;  4Q11 A;  1DIZ A;  3UW2 A;  1FN7 A;  3CVT A;  1LWY A;  1PCZ A;  2QLV A;  1YQK A;  1KO9 A;  2D0B A;  1VKL A;  2PWW A;  4BJU A;  2EHB D;  2JOI A;  5IYD P;  1P5G X;  2QRD A;  3RPJ A;  1UT7 A;  1KY7 A;  2FKF A;  2MJ7 A;  1RM1 A;  1N3A A;  2HKP A;  4DUL A;  1KY6 A;  2V8Q A;  1QN5 A;  2NOI A;  3OC3 C;  4I8O A;  3CWA A;  2NOZ A;  1YQM A;  2FUV A;  4EJZ A;  2LAE A;  2HZM A;  1VOK A;  1QN3 A;  3TE5 A;  2JHJ A;  2I5W A;  4PY5 A;  2YH5 A;  2QR1 A;  1WJW A;  3HS8 A;  1YTB A;  3ENC A;  4EAI A;  2HL9 A;  2MZ8 A;  1V5S A;  1C9B B;  2NOH A;  2G30 A;  4D7R A;  1QTS A;  2FGT A;  3D7Q A;  1VOL B;  3F10 A;  1QTP A;  1TBP A;  1VTL E;  2D0A A;  1K35 A;  1KYF A;  2H4L X;  2NOF A;  3I0X A;  5KL0 A;  3CWU A;  3H1Z A;  4WX8 A;  2OOY A;  3ULX A;  1XSZ A;  4WXA A;  4B0A A;  1WQA A;  1PCM X;  5AN4 A;  1NVP A;  2V92 A;  2Y8Q A;  4EAJ A;  3TDH A;  2NWV A;  5IYC P;  1M3H A;  4IL8 A;  2XHI A;  1VTO A;  1W80 A;  2OOX A;  1MPG A;  3OST A;  1TUO A;  3HS9 A;  3OGD A;  1C4G A;  1KYD A;  1E42 A;  1QNE A;  2EHP A;  4HJH A; 
#chains in the Genus database with same CATH homology
 2JPI A;  2EHP A;  3I3W A;  1K2Y X;  1KFI A;  3PMG A;  1JDY A;  5JN5 A;  1WJW A;  3ENC A;  2F7L A;  5EPC A;  4QG5 A;  3PDK A;  5BMN A;  5HSH A;  1PCJ X;  1P5D X;  2Z0F A;  2EIU A;  4MRQ A;  3UW2 A;  3C04 A;  1K35 A;  2H4L X;  1LXT A;  3BKQ X;  5KL0 A;  3NA5 A;  4WX8 A;  1C47 A;  1VKL A;  4WXA A;  4BJU A;  3RSM A;  1WQA A;  1P5G X;  1PCM X;  5JMV D;  2FKF A;  2DKD A;  5BMP A;  2DKC A;  5F9C A;  3OLP A;  4IL8 A;  3ENO C;  2H5A X;  1TUO A;  2FKM X;  1C4G A;  2FUV A;  1KFQ A;  2DKA A;  4HJH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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