3PDKA

Crystal structure of phosphoglucosamine mutase from b. anthracis
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
445
structure length
445
Chain Sequence
GKYFGTDGVRGVANKELTPELAFKIGRFGGYVLTKDTDRPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTPGVAYLTKALDAQAGVMISASHNPVQDNGIKFFGSDGFKLTDEQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEGGQKYLQYIKQTVEEDFSGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGSTHPEVLAELVKEKGADIGLAFDGDGDRLIAVDEKGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKMTKKPLSELAGEMTKFPQLLVNVRVTDKKLALENEKIKEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEVG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphoglucosamine mutase
publication title Crystal Structure of Bacillus anthracis Phosphoglucosamine Mutase, an Enzyme in the Peptidoglycan Biosynthetic Pathway.
pubmed doi rcsb
source organism Bacillus anthracis
total genus 152
structure length 445
sequence length 445
chains with identical sequence B
ec nomenclature ec 5.4.2.10: Phosphoglucosamine mutase.
pdb deposition date 2010-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3pdkA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pdkA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pdkA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pdkA03
1KFIA 2DKDA 5KL0A 2JPIA 3NA5A 2EHPA 3C04A 5HSHA 1TUOA 1WJWA 2H5AX 3UW2A 3PMGA 1P5DX 5JMVD 4HJHA 5BMNA 2DKCA 2FUVA 4IL8A 1C4GA 1C47A 1LXTA 1PCMX 2EIUA 1K35A 2Z0FA 4WXAA 1WQAA 2DKAA 3BKQX 1K2YX 4BJUA 1PCJX 2FKMX 3OLPA 4WX8A 1JDYA 5F9CA 2H4LX 2FKFA 3PDKA 5BMPA 5JN5A 3ENOC 1VKLA 1P5GX 5EPCA 3RSMA 4MRQA 1KFQA 3ENCA 2F7LA 4QG5A 3I3WA
chains in the Genus database with same CATH superfamily
2DKDA 2PWWA 3CWAA 4D7QA 2NOLA 3NA5A 1J3MA 5AN4A 1YTBA 4CFFA 1QNEA 1TUOA 3KRMA 1PZDA 1B9KA 4EAGA 1QNAA 3F10A 1LWWA 3TE5A 1CDWA 2NOHA 2HL8A 2HZSA 1UT7A 2YH5A 3EAYA 2MJ7A 1D3UA 2EIUA 1RM1A 2I5WA 4EAIA 3VN5A 3DPUA 1NH2A 1VTLE 1PVSA 4Q11A 3I0WA 1K2YX 4BJUA 1R4XA 2Z8UA 1TBAB 4DULA 2G30A 3HS9A 1TBPA 1HU0A 1LWYA 3OLPA 4WX8A 5IYBP 4ROCB 3RPJA 4EALA 1JDYA 3H1ZA 1EUVA 2NVMA 3PDKA 5JN5A 1P5GX 2FGTA 3N89A 4D7RA 5IYCP 4MRQA 1QN9A 1QN5A 3T4NA 1KYDA 1QN8A 4QG5A 3I3WA 2HKPA 3D4VA 1FN7A 2JPIA 2HZMA 2H5AX 2QLVA 1P5DX 5JMVD 4HJHA 1DIZA 2DKCA 2FUVA 1QTPA 1PCMX 1M5Q1 1K35A 4EAKA 1YQMA 1UL7A 2VJ0A 3HS8A 2Y8QA 5IYDP 3CW7A 1QTSA 3CVTA 4EAJA 3KTUA 1YTFA 1E42A 3CWUA 2V8QA 2JHJA 2LAEA 4TPSA 1EBMA 2NLVA 2QREA 1KYFA 2H4LX 2FKFA 2R5XA 2OOYA 1V5SA 2D0CA 2V9JA 3ENOC 1VKLA 4B0AA 1YQLA 3OSMA 3IH7A 3RSMA 2NOFA 2F7LA 3OSTA 2JOIA 4EJYA 1KFIA 2IV9A 5KL0A 2XHIA 3ASMA 5HSHA 5F9CA 1WJWA 2QRCA 3PMGA 1MPGA 1TGHA 1Q9UA 2V92A 1YQKA 4RODB 1W80A 1C47A 1KY7A 1LXTA 3ULXA 1N3AA 1UT4A 1AISA 2NOIA 1MP9A 1VOLB 1N3CA 1XSZA 3OH6A 2YA3A 2D0BA 1QN4A 3CWSA 3OCIA 1QN3A 1PCJX 1YQRA 3CVSA 2FKMX 3DPTA 1PCZA 4WZSD 2NWVA 2QRDA 4I8OA 2D0AA 1QN7A 1VOKA 5EPCA 3I0XA 3F0ZA 3ENCA 1LWVA 2EHPA 3C04A 3UW2A 1QNCA 1NVPA 5BMNA 2NOEA 1KYUA 2QR1A 1QN6A 1N39A 4IL8A 3TDHA 1VTOA 1C4GA 3OGDA 1KY6A 3OSEA 1M3HA 4PY5A 3OC3C 2Z0FA 2OOXA 4WXAA 3SNSA 1T6AA 4ROEB 1WQAA 2DKAA 1M3QA 3BKQX 2EHBD 3OH9A 2NOZA 2O3OA 1KO9A 2IV8A 2JHNA 2Y8LA 1C9BB 3D7QA 5BMPA 1QNBA 2NOBA 1JFIC 2HL9A 4EJZA 2ZFDB 1NGMA 1KFQA 3EIKA 4C7PA 2MZ8A 3CWTA
chains in the Genus database with same CATH topology
1KFIA 2DKDA 5KL0A 2JPIA 3NA5A 2EHPA 3C04A 5HSHA 1TUOA 1WJWA 2H5AX 3UW2A 3PMGA 1P5DX 5JMVD 4HJHA 5BMNA 2DKCA 2FUVA 4IL8A 1C4GA 1C47A 1LXTA 1PCMX 2EIUA 1K35A 2Z0FA 4WXAA 1WQAA 2DKAA 3BKQX 1K2YX 4BJUA 1PCJX 2FKMX 3OLPA 4WX8A 1JDYA 5F9CA 2H4LX 2FKFA 3PDKA 5BMPA 5JN5A 3ENOC 1VKLA 1P5GX 5EPCA 3RSMA 4MRQA 1KFQA 3ENCA 2F7LA 4QG5A 3I3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KFI A;  2DKD A;  5KL0 A;  2JPI A;  3NA5 A;  2EHP A;  3C04 A;  5HSH A;  1TUO A;  1WJW A;  2H5A X;  3UW2 A;  3PMG A;  1P5D X;  5JMV D;  4HJH A;  5BMN A;  2DKC A;  2FUV A;  4IL8 A;  1C4G A;  1C47 A;  1LXT A;  1PCM X;  2EIU A;  1K35 A;  2Z0F A;  4WXA A;  1WQA A;  2DKA A;  3BKQ X;  1K2Y X;  4BJU A;  1PCJ X;  2FKM X;  3OLP A;  4WX8 A;  1JDY A;  5F9C A;  2H4L X;  2FKF A;  3PDK A;  5BMP A;  5JN5 A;  3ENO C;  1VKL A;  1P5G X;  5EPC A;  3RSM A;  4MRQ A;  1KFQ A;  3ENC A;  2F7L A;  4QG5 A;  3I3W A; 
#chains in the Genus database with same CATH topology
 2DKD A;  2PWW A;  3CWA A;  4D7Q A;  2NOL A;  3NA5 A;  1J3M A;  5AN4 A;  1YTB A;  4CFF A;  1QNE A;  1TUO A;  3KRM A;  1PZD A;  1B9K A;  4EAG A;  1QNA A;  3F10 A;  1LWW A;  3TE5 A;  1CDW A;  2NOH A;  2HL8 A;  2HZS A;  1UT7 A;  2YH5 A;  3EAY A;  2MJ7 A;  1D3U A;  2EIU A;  1RM1 A;  2I5W A;  4EAI A;  3VN5 A;  3DPU A;  1NH2 A;  1VTL E;  1PVS A;  4Q11 A;  3I0W A;  1K2Y X;  4BJU A;  1R4X A;  2Z8U A;  1TBA B;  4DUL A;  2G30 A;  3HS9 A;  1TBP A;  1HU0 A;  1LWY A;  3OLP A;  4WX8 A;  5IYB P;  4ROC B;  3RPJ A;  4EAL A;  1JDY A;  3H1Z A;  1EUV A;  2NVM A;  3PDK A;  5JN5 A;  1P5G X;  2FGT A;  3N89 A;  4D7R A;  5IYC P;  4MRQ A;  1QN9 A;  1QN5 A;  3T4N A;  1KYD A;  1QN8 A;  4QG5 A;  3I3W A;  2HKP A;  3D4V A;  1FN7 A;  2JPI A;  2HZM A;  2H5A X;  2QLV A;  1P5D X;  5JMV D;  4HJH A;  1DIZ A;  2DKC A;  2FUV A;  1QTP A;  1PCM X;  1M5Q 1;  1K35 A;  4EAK A;  1YQM A;  1UL7 A;  2VJ0 A;  3HS8 A;  2Y8Q A;  5IYD P;  3CW7 A;  1QTS A;  3CVT A;  4EAJ A;  3KTU A;  1YTF A;  1E42 A;  3CWU A;  2V8Q A;  2JHJ A;  2LAE A;  4TPS A;  1EBM A;  2NLV A;  2QRE A;  1KYF A;  2H4L X;  2FKF A;  2R5X A;  2OOY A;  1V5S A;  2D0C A;  2V9J A;  3ENO C;  1VKL A;  4B0A A;  1YQL A;  3OSM A;  3IH7 A;  3RSM A;  2NOF A;  2F7L A;  3OST A;  2JOI A;  4EJY A;  1KFI A;  2IV9 A;  5KL0 A;  2XHI A;  3ASM A;  5HSH A;  5F9C A;  1WJW A;  2QRC A;  3PMG A;  1MPG A;  1TGH A;  1Q9U A;  2V92 A;  1YQK A;  4ROD B;  1W80 A;  1C47 A;  1KY7 A;  1LXT A;  3ULX A;  1N3A A;  1UT4 A;  1AIS A;  2NOI A;  1MP9 A;  1VOL B;  1N3C A;  1XSZ A;  3OH6 A;  2YA3 A;  2D0B A;  1QN4 A;  3CWS A;  3OCI A;  1QN3 A;  1PCJ X;  1YQR A;  3CVS A;  2FKM X;  3DPT A;  1PCZ A;  4WZS D;  2NWV A;  2QRD A;  4I8O A;  2D0A A;  1QN7 A;  1VOK A;  5EPC A;  3I0X A;  3F0Z A;  3ENC A;  1LWV A;  2EHP A;  3C04 A;  3UW2 A;  1QNC A;  1NVP A;  5BMN A;  2NOE A;  1KYU A;  2QR1 A;  1QN6 A;  1N39 A;  4IL8 A;  3TDH A;  1VTO A;  1C4G A;  3OGD A;  1KY6 A;  3OSE A;  1M3H A;  4PY5 A;  3OC3 C;  2Z0F A;  2OOX A;  4WXA A;  3SNS A;  1T6A A;  4ROE B;  1WQA A;  2DKA A;  1M3Q A;  3BKQ X;  2EHB D;  3OH9 A;  2NOZ A;  2O3O A;  1KO9 A;  2IV8 A;  2JHN A;  2Y8L A;  1C9B B;  3D7Q A;  5BMP A;  1QNB A;  2NOB A;  1JFI C;  2HL9 A;  4EJZ A;  2ZFD B;  1NGM A;  1KFQ A;  3EIK A;  4C7P A;  2MZ8 A;  3CWT A; 
#chains in the Genus database with same CATH homology
 1KFI A;  2DKD A;  5KL0 A;  2JPI A;  3NA5 A;  2EHP A;  3C04 A;  5HSH A;  1TUO A;  1WJW A;  2H5A X;  3UW2 A;  3PMG A;  1P5D X;  5JMV D;  4HJH A;  5BMN A;  2DKC A;  2FUV A;  4IL8 A;  1C4G A;  1C47 A;  1LXT A;  1PCM X;  2EIU A;  1K35 A;  2Z0F A;  4WXA A;  1WQA A;  2DKA A;  3BKQ X;  1K2Y X;  4BJU A;  1PCJ X;  2FKM X;  3OLP A;  4WX8 A;  1JDY A;  5F9C A;  2H4L X;  2FKF A;  3PDK A;  5BMP A;  5JN5 A;  3ENO C;  1VKL A;  1P5G X;  5EPC A;  3RSM A;  4MRQ A;  1KFQ A;  3ENC A;  2F7L A;  4QG5 A;  3I3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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