1KFQA

Crystal structure of exocytosis-sensitive phosphoprotein, pp63/parafusin (phosphoglucomutse) from paramecium. open form
Total Genus 174
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
571
structure length
571
Chain Sequence
QQVIPAPRVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGRQFFVTPSDSLAVIAANANLIFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHETATALANIIKLGLEISDIAQFTGRNEPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Paramecium tetraurelia
publication title Crystal structure analysis of the exocytosis-sensitive phosphoprotein, pp63/parafusin (phosphoglucomutase), from Paramecium reveals significant conformational variability.
pubmed doi rcsb
molecule keywords phosphoglucomutase 1
total genus 174
structure length 571
sequence length 571
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2001-11-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1kfqA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1kfqA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1kfqA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1kfqA01
1P5DX 2FKFA 3C04A 2EIUA 1P5GX 5BMPA 5BMNA 2DKDA 3ENCA 3I3WA 4BJUA 3PDKA 3NA5A 1KFQA 4QG5A 1C4GA 2FUVA 4MRQA 4WXAA 2DKAA 3RSMA 1JDYA 5JN5A 2H4LX 2F7LA 4WX8A 5F9CA 2DKCA 4IL8A 3BKQX 1VKLA 1WQAA 1C47A 1K2YX 2Z0FA 5EPCA 1PCMX 1KFIA 1WJWA 2H5AX 5KL0A 1TUOA 5HSHA 5JMVD 1K35A 2EHPA 3OLPA 2FKMX 4HJHA 3ENOC 3PMGA 3UW2A 1PCJX 2JPIA 1LXTA
chains in the Genus database with same CATH superfamily
1P5DX 1EBMA 3OCIA 3CWTA 1UT4A 1P5GX 2HL9A 4D7RA 1QNBA 2NOEA 3ENCA 4EAJA 1AISA 3OSTA 2HL8A 1YQKA 2O3OA 4EAKA 1YQLA 2FUVA 2NOIA 4WXAA 4EAGA 3D4VA 3RSMA 2R5XA 2V92A 1UT7A 3DPTA 3I0WA 1J3MA 2D0CA 1CDWA 1VTLE 1RM1A 1HU0A 2Z0FA 3OC3C 3HS9A 1VTOA 1KFIA 1N39A 5IYDP 5HSHA 4WZSD 3OSEA 1T6AA 4EAIA 1QN3A 2IV9A 3HS8A 4HJHA 2YH5A 1KYUA 1YTBA 4B0AA 4RODB 1QTPA 5BMNA 1V5SA 2DKDA 3CVSA 1M3QA 1LWVA 2G30A 4I8OA 1XSZA 3PDKA 3CWSA 1JFIC 3NA5A 1KFQA 4MRQA 2HZSA 3VN5A 1EUVA 2DKAA 2MZ8A 2XHIA 1W80A 2NOBA 2ZFDB 3F0ZA 3RPJA 1PCZA 2F7LA 1UL7A 1E42A 4IL8A 1YTFA 4ROCB 4D7QA 1NGMA 1VKLA 1C47A 1KY7A 1K2YX 2QREA 2V8QA 1R4XA 5EPCA 1PCMX 2PWWA 1WJWA 3EIKA 1KYFA 2JHJA 3OLPA 2HKPA 2D0BA 2QRDA 3OH6A 3PMGA 4WX8A 4Q11A 2JPIA 2QR1A 2YA3A 3TE5A 4DULA 1MPGA 5F9CA 1NH2A 2NOLA 3F10A 1B9KA 5BMPA 3CWAA 1QNAA 2NOHA 3I3WA 2EHBD 2NVMA 4BJUA 4C7PA 1QNCA 2I5WA 1QNEA 1YQMA 3H1ZA 2QRCA 2QLVA 1PVSA 4PY5A 2Y8QA 5JN5A 2D0AA 2H4LX 1M5Q1 1Q9UA 3SNSA 1QN5A 2MJ7A 5AN4A 3D7QA 1LWYA 2LAEA 1VOLB 3OGDA 4ROEB 3IH7A 2JHNA 1TGHA 1C9BB 2V9JA 1KY6A 1KYDA 1QN9A 5KL0A 1TUOA 5JMVD 1N3CA 3DPUA 3N89A 2EHPA 3CW7A 3KRMA 4EALA 3ENOC 1FN7A 3UW2A 1LXTA 1C4GA 2NOFA 2FKFA 3OSMA 3ULXA 3C04A 3EAYA 2EIUA 2Z8UA 2IV8A 2NLVA 3OH9A 1QN4A 3CWUA 2HZMA 3I0XA 2JOIA 1YQRA 4QG5A 1TBAB 1JDYA 3TDHA 1DIZA 1QN7A 2FGTA 3ASMA 3T4NA 2VJ0A 4CFFA 3KTUA 2DKCA 5IYBP 3CVTA 4EJYA 3BKQX 2NWVA 2OOYA 4TPSA 1QN6A 1WQAA 4EJZA 1M3HA 1KO9A 1VOKA 1NVPA 2H5AX 2Y8LA 1N3AA 1LWWA 1PZDA 1K35A 5IYCP 1D3UA 1TBPA 1QTSA 1QN8A 1MP9A 2FKMX 1PCJX 2OOXA 2NOZA
chains in the Genus database with same CATH topology
1P5DX 2FKFA 3C04A 2EIUA 1P5GX 5BMPA 5BMNA 2DKDA 3ENCA 3I3WA 4BJUA 3PDKA 3NA5A 1KFQA 4QG5A 1C4GA 2FUVA 4MRQA 4WXAA 2DKAA 3RSMA 1JDYA 5JN5A 2H4LX 2F7LA 4WX8A 5F9CA 2DKCA 4IL8A 3BKQX 1VKLA 1WQAA 1C47A 1K2YX 2Z0FA 5EPCA 1PCMX 1KFIA 1WJWA 2H5AX 5KL0A 1TUOA 5HSHA 5JMVD 1K35A 2EHPA 3OLPA 2FKMX 4HJHA 3ENOC 3PMGA 3UW2A 1PCJX 2JPIA 1LXTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P5D X;  2FKF A;  3C04 A;  2EIU A;  1P5G X;  5BMP A;  5BMN A;  2DKD A;  3ENC A;  3I3W A;  4BJU A;  3PDK A;  3NA5 A;  1KFQ A;  4QG5 A;  1C4G A;  2FUV A;  4MRQ A;  4WXA A;  2DKA A;  3RSM A;  1JDY A;  5JN5 A;  2H4L X;  2F7L A;  4WX8 A;  5F9C A;  2DKC A;  4IL8 A;  3BKQ X;  1VKL A;  1WQA A;  1C47 A;  1K2Y X;  2Z0F A;  5EPC A;  1PCM X;  1KFI A;  1WJW A;  2H5A X;  5KL0 A;  1TUO A;  5HSH A;  5JMV D;  1K35 A;  2EHP A;  3OLP A;  2FKM X;  4HJH A;  3ENO C;  3PMG A;  3UW2 A;  1PCJ X;  2JPI A;  1LXT A; 
#chains in the Genus database with same CATH topology
 1P5D X;  1EBM A;  3OCI A;  3CWT A;  1UT4 A;  1P5G X;  2HL9 A;  4D7R A;  1QNB A;  2NOE A;  3ENC A;  4EAJ A;  1AIS A;  3OST A;  2HL8 A;  1YQK A;  2O3O A;  4EAK A;  1YQL A;  2FUV A;  2NOI A;  4WXA A;  4EAG A;  3D4V A;  3RSM A;  2R5X A;  2V92 A;  1UT7 A;  3DPT A;  3I0W A;  1J3M A;  2D0C A;  1CDW A;  1VTL E;  1RM1 A;  1HU0 A;  2Z0F A;  3OC3 C;  3HS9 A;  1VTO A;  1KFI A;  1N39 A;  5IYD P;  5HSH A;  4WZS D;  3OSE A;  1T6A A;  4EAI A;  1QN3 A;  2IV9 A;  3HS8 A;  4HJH A;  2YH5 A;  1KYU A;  1YTB A;  4B0A A;  4ROD B;  1QTP A;  5BMN A;  1V5S A;  2DKD A;  3CVS A;  1M3Q A;  1LWV A;  2G30 A;  4I8O A;  1XSZ A;  3PDK A;  3CWS A;  1JFI C;  3NA5 A;  1KFQ A;  4MRQ A;  2HZS A;  3VN5 A;  1EUV A;  2DKA A;  2MZ8 A;  2XHI A;  1W80 A;  2NOB A;  2ZFD B;  3F0Z A;  3RPJ A;  1PCZ A;  2F7L A;  1UL7 A;  1E42 A;  4IL8 A;  1YTF A;  4ROC B;  4D7Q A;  1NGM A;  1VKL A;  1C47 A;  1KY7 A;  1K2Y X;  2QRE A;  2V8Q A;  1R4X A;  5EPC A;  1PCM X;  2PWW A;  1WJW A;  3EIK A;  1KYF A;  2JHJ A;  3OLP A;  2HKP A;  2D0B A;  2QRD A;  3OH6 A;  3PMG A;  4WX8 A;  4Q11 A;  2JPI A;  2QR1 A;  2YA3 A;  3TE5 A;  4DUL A;  1MPG A;  5F9C A;  1NH2 A;  2NOL A;  3F10 A;  1B9K A;  5BMP A;  3CWA A;  1QNA A;  2NOH A;  3I3W A;  2EHB D;  2NVM A;  4BJU A;  4C7P A;  1QNC A;  2I5W A;  1QNE A;  1YQM A;  3H1Z A;  2QRC A;  2QLV A;  1PVS A;  4PY5 A;  2Y8Q A;  5JN5 A;  2D0A A;  2H4L X;  1M5Q 1;  1Q9U A;  3SNS A;  1QN5 A;  2MJ7 A;  5AN4 A;  3D7Q A;  1LWY A;  2LAE A;  1VOL B;  3OGD A;  4ROE B;  3IH7 A;  2JHN A;  1TGH A;  1C9B B;  2V9J A;  1KY6 A;  1KYD A;  1QN9 A;  5KL0 A;  1TUO A;  5JMV D;  1N3C A;  3DPU A;  3N89 A;  2EHP A;  3CW7 A;  3KRM A;  4EAL A;  3ENO C;  1FN7 A;  3UW2 A;  1LXT A;  1C4G A;  2NOF A;  2FKF A;  3OSM A;  3ULX A;  3C04 A;  3EAY A;  2EIU A;  2Z8U A;  2IV8 A;  2NLV A;  3OH9 A;  1QN4 A;  3CWU A;  2HZM A;  3I0X A;  2JOI A;  1YQR A;  4QG5 A;  1TBA B;  1JDY A;  3TDH A;  1DIZ A;  1QN7 A;  2FGT A;  3ASM A;  3T4N A;  2VJ0 A;  4CFF A;  3KTU A;  2DKC A;  5IYB P;  3CVT A;  4EJY A;  3BKQ X;  2NWV A;  2OOY A;  4TPS A;  1QN6 A;  1WQA A;  4EJZ A;  1M3H A;  1KO9 A;  1VOK A;  1NVP A;  2H5A X;  2Y8L A;  1N3A A;  1LWW A;  1PZD A;  1K35 A;  5IYC P;  1D3U A;  1TBP A;  1QTS A;  1QN8 A;  1MP9 A;  2FKM X;  1PCJ X;  2OOX A;  2NOZ A; 
#chains in the Genus database with same CATH homology
 1P5D X;  2FKF A;  3C04 A;  2EIU A;  1P5G X;  5BMP A;  5BMN A;  2DKD A;  3ENC A;  3I3W A;  4BJU A;  3PDK A;  3NA5 A;  1KFQ A;  4QG5 A;  1C4G A;  2FUV A;  4MRQ A;  4WXA A;  2DKA A;  3RSM A;  1JDY A;  5JN5 A;  2H4L X;  2F7L A;  4WX8 A;  5F9C A;  2DKC A;  4IL8 A;  3BKQ X;  1VKL A;  1WQA A;  1C47 A;  1K2Y X;  2Z0F A;  5EPC A;  1PCM X;  1KFI A;  1WJW A;  2H5A X;  5KL0 A;  1TUO A;  5HSH A;  5JMV D;  1K35 A;  2EHP A;  3OLP A;  2FKM X;  4HJH A;  3ENO C;  3PMG A;  3UW2 A;  1PCJ X;  2JPI A;  1LXT A; 
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similar chains in the pdb database (?% sequence similarity)

 
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