2H5AX

Complex of the enzyme pmm/pgm with xylose 1-phosphate
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphomannomutase/phosphoglucomutase
publication title Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and an inhibitor.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 171
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2006-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2h5aX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h5aX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h5aX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h5aX02
2F7LA 1P5DX 5F9CA 2H5AX 2H4LX 1WQAA 2FKMX 3RSMA 3OLPA 4QG5A 2DKAA 2DKDA 1PCMX 2Z0FA 5EPCA 5KL0A 1KFQA 3UW2A 4IL8A 5HSHA 5JMVD 1WJWA 3I3WA 1K35A 3BKQX 3PMGA 5BMPA 2FKFA 1TUOA 1K2YX 3ENOC 4MRQA 1JDYA 3C04A 5JN5A 1VKLA 1C47A 1P5GX 2DKCA 4BJUA 3NA5A 1C4GA 2FUVA 3ENCA 4HJHA 2EHPA 2EIUA 1PCJX 4WXAA 1KFIA 5BMNA 1LXTA 4WX8A 3PDKA 2JPIA
chains in the Genus database with same CATH superfamily
4TPSA 2H5AX 2H4LX 1UT7A 2FKMX 1N39A 3CVSA 4B0AA 1TGHA 3T4NA 2Z0FA 3OH9A 1PCZA 2NOEA 1KYFA 5HSHA 1VTOA 1DIZA 2XHIA 3I3WA 3PMGA 2HZSA 2D0BA 1M3QA 2O3OA 4ROEB 5JN5A 1D3UA 2IV8A 3F0ZA 1NVPA 3CWUA 1KYDA 1PZDA 1QNBA 2ZFDB 4BJUA 2HL8A 1TBAB 2FUVA 3ENCA 1EBMA 3DPUA 3OSTA 4DULA 1V5SA 1VOKA 2Y8LA 1J3MA 3VN5A 4WX8A 3EIKA 3RSMA 1YQLA 1XSZA 2HZMA 1MPGA 2QR1A 3OH6A 1N3AA 5AN4A 1W80A 1EUVA 5IYBP 1QNEA 2YA3A 3IH7A 3KRMA 1E42A 1QN7A 2MJ7A 1YQKA 1WJWA 1QN6A 2FKFA 2Y8QA 2NLVA 1KY6A 1R4XA 2OOYA 4MRQA 1Q9UA 2MZ8A 1VTLE 1JDYA 2QRCA 1KY7A 2NOHA 1YTBA 1QN8A 1UT4A 2JHNA 1T6AA 1RM1A 1C9BB 4Q11A 1KO9A 2JOIA 3NA5A 4EAKA 1QNCA 2PWWA 3CW7A 1NH2A 4CFFA 1HU0A 1LXTA 2D0CA 1QN5A 1QTPA 2QRDA 3OCIA 5F9CA 1P5DX 4PY5A 1MP9A 2FGTA 2R5XA 1KYUA 4QG5A 3TDHA 1PCMX 3CWAA 4EALA 3HS9A 1FN7A 1M5Q1 5JMVD 2IV9A 2V92A 2YH5A 2G30A 3I0XA 1YTFA 1YQRA 2NOIA 2HKPA 4EJYA 3C04A 3CWTA 2LAEA 5IYDP 1TBPA 3OSMA 3OC3C 1P5GX 3DPTA 3I0WA 2V8QA 4RODB 1B9KA 2QREA 2D0AA 1C4GA 4HJHA 1M3HA 2EHPA 1CDWA 3OGDA 2HL9A 3KTUA 4WXAA 2EIUA 3RPJA 1KFIA 3ASMA 4EAJA 4WZSD 2NOBA 1PVSA 1QN3A 2I5WA 2VJ0A 1N3CA 2JPIA 2F7LA 2NWVA 3N89A 1WQAA 4EAGA 1QN9A 2QLVA 4EJZA 3D7QA 3OLPA 1UL7A 2DKAA 2DKDA 5EPCA 1NGMA 4I8OA 5KL0A 3SNSA 3CWSA 1AISA 1KFQA 3UW2A 2NOZA 4IL8A 1VOLB 2JHJA 3D4VA 5IYCP 5BMPA 1K35A 3BKQX 4C7PA 1LWYA 2NOLA 3TE5A 1TUOA 3H1ZA 4D7QA 1K2YX 3ENOC 2NOFA 3OSEA 3F10A 4EAIA 1VKLA 1QNAA 1C47A 2NVMA 1LWWA 1QTSA 1JFIC 2DKCA 3EAYA 2Z8UA 1YQMA 2OOXA 2EHBD 3ULXA 3CVTA 2V9JA 1PCJX 3HS8A 1QN4A 5BMNA 1LWVA 3PDKA 4D7RA 4ROCB
chains in the Genus database with same CATH topology
2F7LA 1P5DX 5F9CA 2H5AX 2H4LX 1WQAA 2FKMX 3RSMA 3OLPA 4QG5A 2DKAA 2DKDA 1PCMX 2Z0FA 5EPCA 5KL0A 1KFQA 3UW2A 4IL8A 5HSHA 5JMVD 1WJWA 3I3WA 1K35A 3BKQX 3PMGA 5BMPA 2FKFA 1TUOA 1K2YX 3ENOC 4MRQA 1JDYA 3C04A 5JN5A 1VKLA 1C47A 1P5GX 2DKCA 4BJUA 3NA5A 1C4GA 2FUVA 3ENCA 4HJHA 2EHPA 2EIUA 1PCJX 4WXAA 1KFIA 5BMNA 1LXTA 4WX8A 3PDKA 2JPIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F7L A;  1P5D X;  5F9C A;  2H5A X;  2H4L X;  1WQA A;  2FKM X;  3RSM A;  3OLP A;  4QG5 A;  2DKA A;  2DKD A;  1PCM X;  2Z0F A;  5EPC A;  5KL0 A;  1KFQ A;  3UW2 A;  4IL8 A;  5HSH A;  5JMV D;  1WJW A;  3I3W A;  1K35 A;  3BKQ X;  3PMG A;  5BMP A;  2FKF A;  1TUO A;  1K2Y X;  3ENO C;  4MRQ A;  1JDY A;  3C04 A;  5JN5 A;  1VKL A;  1C47 A;  1P5G X;  2DKC A;  4BJU A;  3NA5 A;  1C4G A;  2FUV A;  3ENC A;  4HJH A;  2EHP A;  2EIU A;  1PCJ X;  4WXA A;  1KFI A;  5BMN A;  1LXT A;  4WX8 A;  3PDK A;  2JPI A; 
#chains in the Genus database with same CATH topology
 4TPS A;  2H5A X;  2H4L X;  1UT7 A;  2FKM X;  1N39 A;  3CVS A;  4B0A A;  1TGH A;  3T4N A;  2Z0F A;  3OH9 A;  1PCZ A;  2NOE A;  1KYF A;  5HSH A;  1VTO A;  1DIZ A;  2XHI A;  3I3W A;  3PMG A;  2HZS A;  2D0B A;  1M3Q A;  2O3O A;  4ROE B;  5JN5 A;  1D3U A;  2IV8 A;  3F0Z A;  1NVP A;  3CWU A;  1KYD A;  1PZD A;  1QNB A;  2ZFD B;  4BJU A;  2HL8 A;  1TBA B;  2FUV A;  3ENC A;  1EBM A;  3DPU A;  3OST A;  4DUL A;  1V5S A;  1VOK A;  2Y8L A;  1J3M A;  3VN5 A;  4WX8 A;  3EIK A;  3RSM A;  1YQL A;  1XSZ A;  2HZM A;  1MPG A;  2QR1 A;  3OH6 A;  1N3A A;  5AN4 A;  1W80 A;  1EUV A;  5IYB P;  1QNE A;  2YA3 A;  3IH7 A;  3KRM A;  1E42 A;  1QN7 A;  2MJ7 A;  1YQK A;  1WJW A;  1QN6 A;  2FKF A;  2Y8Q A;  2NLV A;  1KY6 A;  1R4X A;  2OOY A;  4MRQ A;  1Q9U A;  2MZ8 A;  1VTL E;  1JDY A;  2QRC A;  1KY7 A;  2NOH A;  1YTB A;  1QN8 A;  1UT4 A;  2JHN A;  1T6A A;  1RM1 A;  1C9B B;  4Q11 A;  1KO9 A;  2JOI A;  3NA5 A;  4EAK A;  1QNC A;  2PWW A;  3CW7 A;  1NH2 A;  4CFF A;  1HU0 A;  1LXT A;  2D0C A;  1QN5 A;  1QTP A;  2QRD A;  3OCI A;  5F9C A;  1P5D X;  4PY5 A;  1MP9 A;  2FGT A;  2R5X A;  1KYU A;  4QG5 A;  3TDH A;  1PCM X;  3CWA A;  4EAL A;  3HS9 A;  1FN7 A;  1M5Q 1;  5JMV D;  2IV9 A;  2V92 A;  2YH5 A;  2G30 A;  3I0X A;  1YTF A;  1YQR A;  2NOI A;  2HKP A;  4EJY A;  3C04 A;  3CWT A;  2LAE A;  5IYD P;  1TBP A;  3OSM A;  3OC3 C;  1P5G X;  3DPT A;  3I0W A;  2V8Q A;  4ROD B;  1B9K A;  2QRE A;  2D0A A;  1C4G A;  4HJH A;  1M3H A;  2EHP A;  1CDW A;  3OGD A;  2HL9 A;  3KTU A;  4WXA A;  2EIU A;  3RPJ A;  1KFI A;  3ASM A;  4EAJ A;  4WZS D;  2NOB A;  1PVS A;  1QN3 A;  2I5W A;  2VJ0 A;  1N3C A;  2JPI A;  2F7L A;  2NWV A;  3N89 A;  1WQA A;  4EAG A;  1QN9 A;  2QLV A;  4EJZ A;  3D7Q A;  3OLP A;  1UL7 A;  2DKA A;  2DKD A;  5EPC A;  1NGM A;  4I8O A;  5KL0 A;  3SNS A;  3CWS A;  1AIS A;  1KFQ A;  3UW2 A;  2NOZ A;  4IL8 A;  1VOL B;  2JHJ A;  3D4V A;  5IYC P;  5BMP A;  1K35 A;  3BKQ X;  4C7P A;  1LWY A;  2NOL A;  3TE5 A;  1TUO A;  3H1Z A;  4D7Q A;  1K2Y X;  3ENO C;  2NOF A;  3OSE A;  3F10 A;  4EAI A;  1VKL A;  1QNA A;  1C47 A;  2NVM A;  1LWW A;  1QTS A;  1JFI C;  2DKC A;  3EAY A;  2Z8U A;  1YQM A;  2OOX A;  2EHB D;  3ULX A;  3CVT A;  2V9J A;  1PCJ X;  3HS8 A;  1QN4 A;  5BMN A;  1LWV A;  3PDK A;  4D7R A;  4ROC B; 
#chains in the Genus database with same CATH homology
 2F7L A;  1P5D X;  5F9C A;  2H5A X;  2H4L X;  1WQA A;  2FKM X;  3RSM A;  3OLP A;  4QG5 A;  2DKA A;  2DKD A;  1PCM X;  2Z0F A;  5EPC A;  5KL0 A;  1KFQ A;  3UW2 A;  4IL8 A;  5HSH A;  5JMV D;  1WJW A;  3I3W A;  1K35 A;  3BKQ X;  3PMG A;  5BMP A;  2FKF A;  1TUO A;  1K2Y X;  3ENO C;  4MRQ A;  1JDY A;  3C04 A;  5JN5 A;  1VKL A;  1C47 A;  1P5G X;  2DKC A;  4BJU A;  3NA5 A;  1C4G A;  2FUV A;  3ENC A;  4HJH A;  2EHP A;  2EIU A;  1PCJ X;  4WXA A;  1KFI A;  5BMN A;  1LXT A;  4WX8 A;  3PDK A;  2JPI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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