4QG5A

Crystal structure of phosphoglucomutase from leishmania major at 3.5 angstrom resolution
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
565
structure length
565
Chain Sequence
FQQPNYTANFVQSTFNALHRQGAVPDVLVVGGDGRYYTSEAVQVILKVSAANGVRCVWVGQHGLLSTPAVSTMVRRRRDADGRKATGAFILTASHNPGGPDADFGIKYNSENGGPAPEKLTSQIYEETVKITHIKMAPTLPEVDIHTLGTYTFDDYNFQVEVVDSLADYAAYMQEVFDFEAIRALVQRLDFKVHVDSLHGVSGPYVDRIFHEGLGVPKTSLFRTNVLPDFGGCHPDPNLTYAADLVHVMGLLPDGNANPAMKHISTVPSFGVAFDGDADRNMILGCRFFVNPSDSLAVLAANADCVPFFTQSSSSGLKAVARSMPTSGAVDRVAAAHDFALFEVPTGWKFFGNLMDSKDLYGGKDFNPLLCGEESFGTGSNHIREKDGIWASLFWLSVIAKRNAPGTPLVGVQQIVEEHWATYGRNYYSRYDYEDVSAEAAKAVMDTVENTVVDDVPNLNGVACKTIDNFSYTDPIDGSVSTKQGVRVLFEDGSRFVLRLSGTGSSGATIRLYLEQYMDSATVKSHLAEKTLPTASTALKALIGVALQVSKMESLTGRKTPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords Putative phosphoglucomutase
publication title Crystal structure of phosphoglucomutase from Leishmania major at 3.5 angstrom resolution
rcsb
source organism Leishmania major
total genus 123
structure length 565
sequence length 565
chains with identical sequence B, C, D
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2014-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4qg5A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4qg5A02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4qg5A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4qg5A01
4WXAA 1K35A 2FKFA 2Z0FA 1WQAA 2DKAA 3ENOC 1VKLA 2EHPA 1P5GX 3BKQX 1C47A 1K2YX 4HJHA 1P5DX 1LXTA 4BJUA 3PDKA 3ENCA 2JPIA 1C4GA 5F9CA 1KFQA 2FKMX 3UW2A 3I3WA 1TUOA 3NA5A 1JDYA 2DKDA 5JN5A 1PCJX 4IL8A 5JMVD 4MRQA 2DKCA 2F7LA 3OLPA 5HSHA 2H5AX 1KFIA 2H4LX 5KL0A 3C04A 2FUVA 4QG5A 3RSMA 1PCMX 4WX8A 5EPCA 2EIUA 5BMPA 1WJWA 5BMNA 3PMGA
chains in the Genus database with same CATH superfamily
2MJ7A 1K35A 2FKFA 2Z0FA 4WXAA 2PWWA 4DULA 4WZSD 1T6AA 1D3UA 3TE5A 1VOLB 2JHJA 2NVMA 1LWWA 3BKQX 3VN5A 1KYUA 1K2YX 4HJHA 1QTPA 1NVPA 3CWTA 2D0AA 1QN8A 4EAKA 5F9CA 2FKMX 1TBPA 3DPUA 2QRCA 1C9BB 3H1ZA 1JDYA 1PCZA 2NOBA 1AISA 1QN5A 2OOYA 1PCJX 1M3QA 3D7QA 2NOLA 4B0AA 4EJZA 3TDHA 3KRMA 5HSHA 1CDWA 1KO9A 2Y8LA 2H5AX 1KFIA 2H4LX 2G30A 1KY6A 1QNCA 3CWSA 1VTLE 1MP9A 2OOXA 1V5SA 4EAIA 1QN3A 2NOHA 2FUVA 1N3AA 1UT7A 1QN9A 1LWYA 4TPSA 3ULXA 1KYFA 2DKCA 1VOKA 1PVSA 1QN4A 1KYDA 3I0WA 2O3OA 3KTUA 2D0CA 3ENOC 2EHPA 1P5GX 1Q9UA 2Y8QA 1EUVA 4ROCB 1YQKA 1LXTA 3CVSA 3PDKA 1W80A 2I5WA 1KFQA 2NOEA 1YQLA 2JHNA 3I3WA 3OH9A 1QN6A 1TUOA 2HL8A 2R5XA 1QNEA 5AN4A 1TBAB 3OH6A 1UL7A 2F7LA 2NWVA 1R4XA 2MZ8A 2V8QA 5KL0A 1XSZA 1QNBA 3SNSA 5IYCP 3D4VA 2NLVA 3C04A 1RM1A 2QRDA 3RSMA 1QTSA 1TGHA 1KY7A 2QREA 3OSMA 1J3MA 5EPCA 1NH2A 2EIUA 5BMNA 1UT4A 1QN7A 4Q11A 2DKAA 2V92A 1VKLA 2IV9A 1PZDA 3EIKA 1C47A 3OGDA 3OC3C 1C4GA 1JFIC 3DPTA 2LAEA 3UW2A 4CFFA 2NOIA 1YTFA 5IYDP 1LWVA 3CW7A 2QLVA 5JN5A 2NOFA 4IL8A 4ROEB 3OLPA 1EBMA 2YA3A 3IH7A 1YTBA 2Z8UA 4EALA 2HKPA 4I8OA 5IYBP 4C7PA 1N39A 1PCMX 4WX8A 1YQMA 5BMPA 3OCIA 2YH5A 3CVTA 2HZSA 4PY5A 3PMGA 3F0ZA 3HS8A 3OSEA 3I0XA 1N3CA 1FN7A 2JOIA 1WQAA 4RODB 3N89A 4D7QA 1P5DX 2HZMA 4BJUA 3ENCA 1M3HA 1NGMA 2JPIA 1E42A 1DIZA 1B9KA 3NA5A 1HU0A 2HL9A 2DKDA 3CWUA 2XHIA 1QNAA 1MPGA 5JMVD 4MRQA 2QR1A 3ASMA 3F10A 4EJYA 1VTOA 2D0BA 1M5Q1 2ZFDB 3OSTA 4EAJA 2V9JA 3CWAA 2NOZA 4QG5A 2EHBD 3RPJA 4D7RA 4EAGA 1YQRA 3EAYA 3HS9A 2FGTA 1WJWA 2IV8A 3T4NA 2VJ0A
chains in the Genus database with same CATH topology
4WXAA 1K35A 2FKFA 2Z0FA 1WQAA 2DKAA 3ENOC 1VKLA 2EHPA 1P5GX 3BKQX 1C47A 1K2YX 4HJHA 1P5DX 1LXTA 4BJUA 3PDKA 3ENCA 2JPIA 1C4GA 5F9CA 1KFQA 2FKMX 3UW2A 3I3WA 1TUOA 3NA5A 1JDYA 2DKDA 5JN5A 1PCJX 4IL8A 5JMVD 4MRQA 2DKCA 2F7LA 3OLPA 5HSHA 2H5AX 1KFIA 2H4LX 5KL0A 3C04A 2FUVA 4QG5A 3RSMA 1PCMX 4WX8A 5EPCA 2EIUA 5BMPA 1WJWA 5BMNA 3PMGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WXA A;  1K35 A;  2FKF A;  2Z0F A;  1WQA A;  2DKA A;  3ENO C;  1VKL A;  2EHP A;  1P5G X;  3BKQ X;  1C47 A;  1K2Y X;  4HJH A;  1P5D X;  1LXT A;  4BJU A;  3PDK A;  3ENC A;  2JPI A;  1C4G A;  5F9C A;  1KFQ A;  2FKM X;  3UW2 A;  3I3W A;  1TUO A;  3NA5 A;  1JDY A;  2DKD A;  5JN5 A;  1PCJ X;  4IL8 A;  5JMV D;  4MRQ A;  2DKC A;  2F7L A;  3OLP A;  5HSH A;  2H5A X;  1KFI A;  2H4L X;  5KL0 A;  3C04 A;  2FUV A;  4QG5 A;  3RSM A;  1PCM X;  4WX8 A;  5EPC A;  2EIU A;  5BMP A;  1WJW A;  5BMN A;  3PMG A; 
#chains in the Genus database with same CATH topology
 2MJ7 A;  1K35 A;  2FKF A;  2Z0F A;  4WXA A;  2PWW A;  4DUL A;  4WZS D;  1T6A A;  1D3U A;  3TE5 A;  1VOL B;  2JHJ A;  2NVM A;  1LWW A;  3BKQ X;  3VN5 A;  1KYU A;  1K2Y X;  4HJH A;  1QTP A;  1NVP A;  3CWT A;  2D0A A;  1QN8 A;  4EAK A;  5F9C A;  2FKM X;  1TBP A;  3DPU A;  2QRC A;  1C9B B;  3H1Z A;  1JDY A;  1PCZ A;  2NOB A;  1AIS A;  1QN5 A;  2OOY A;  1PCJ X;  1M3Q A;  3D7Q A;  2NOL A;  4B0A A;  4EJZ A;  3TDH A;  3KRM A;  5HSH A;  1CDW A;  1KO9 A;  2Y8L A;  2H5A X;  1KFI A;  2H4L X;  2G30 A;  1KY6 A;  1QNC A;  3CWS A;  1VTL E;  1MP9 A;  2OOX A;  1V5S A;  4EAI A;  1QN3 A;  2NOH A;  2FUV A;  1N3A A;  1UT7 A;  1QN9 A;  1LWY A;  4TPS A;  3ULX A;  1KYF A;  2DKC A;  1VOK A;  1PVS A;  1QN4 A;  1KYD A;  3I0W A;  2O3O A;  3KTU A;  2D0C A;  3ENO C;  2EHP A;  1P5G X;  1Q9U A;  2Y8Q A;  1EUV A;  4ROC B;  1YQK A;  1LXT A;  3CVS A;  3PDK A;  1W80 A;  2I5W A;  1KFQ A;  2NOE A;  1YQL A;  2JHN A;  3I3W A;  3OH9 A;  1QN6 A;  1TUO A;  2HL8 A;  2R5X A;  1QNE A;  5AN4 A;  1TBA B;  3OH6 A;  1UL7 A;  2F7L A;  2NWV A;  1R4X A;  2MZ8 A;  2V8Q A;  5KL0 A;  1XSZ A;  1QNB A;  3SNS A;  5IYC P;  3D4V A;  2NLV A;  3C04 A;  1RM1 A;  2QRD A;  3RSM A;  1QTS A;  1TGH A;  1KY7 A;  2QRE A;  3OSM A;  1J3M A;  5EPC A;  1NH2 A;  2EIU A;  5BMN A;  1UT4 A;  1QN7 A;  4Q11 A;  2DKA A;  2V92 A;  1VKL A;  2IV9 A;  1PZD A;  3EIK A;  1C47 A;  3OGD A;  3OC3 C;  1C4G A;  1JFI C;  3DPT A;  2LAE A;  3UW2 A;  4CFF A;  2NOI A;  1YTF A;  5IYD P;  1LWV A;  3CW7 A;  2QLV A;  5JN5 A;  2NOF A;  4IL8 A;  4ROE B;  3OLP A;  1EBM A;  2YA3 A;  3IH7 A;  1YTB A;  2Z8U A;  4EAL A;  2HKP A;  4I8O A;  5IYB P;  4C7P A;  1N39 A;  1PCM X;  4WX8 A;  1YQM A;  5BMP A;  3OCI A;  2YH5 A;  3CVT A;  2HZS A;  4PY5 A;  3PMG A;  3F0Z A;  3HS8 A;  3OSE A;  3I0X A;  1N3C A;  1FN7 A;  2JOI A;  1WQA A;  4ROD B;  3N89 A;  4D7Q A;  1P5D X;  2HZM A;  4BJU A;  3ENC A;  1M3H A;  1NGM A;  2JPI A;  1E42 A;  1DIZ A;  1B9K A;  3NA5 A;  1HU0 A;  2HL9 A;  2DKD A;  3CWU A;  2XHI A;  1QNA A;  1MPG A;  5JMV D;  4MRQ A;  2QR1 A;  3ASM A;  3F10 A;  4EJY A;  1VTO A;  2D0B A;  1M5Q 1;  2ZFD B;  3OST A;  4EAJ A;  2V9J A;  3CWA A;  2NOZ A;  4QG5 A;  2EHB D;  3RPJ A;  4D7R A;  4EAG A;  1YQR A;  3EAY A;  3HS9 A;  2FGT A;  1WJW A;  2IV8 A;  3T4N A;  2VJ0 A; 
#chains in the Genus database with same CATH homology
 4WXA A;  1K35 A;  2FKF A;  2Z0F A;  1WQA A;  2DKA A;  3ENO C;  1VKL A;  2EHP A;  1P5G X;  3BKQ X;  1C47 A;  1K2Y X;  4HJH A;  1P5D X;  1LXT A;  4BJU A;  3PDK A;  3ENC A;  2JPI A;  1C4G A;  5F9C A;  1KFQ A;  2FKM X;  3UW2 A;  3I3W A;  1TUO A;  3NA5 A;  1JDY A;  2DKD A;  5JN5 A;  1PCJ X;  4IL8 A;  5JMV D;  4MRQ A;  2DKC A;  2F7L A;  3OLP A;  5HSH A;  2H5A X;  1KFI A;  2H4L X;  5KL0 A;  3C04 A;  2FUV A;  4QG5 A;  3RSM A;  1PCM X;  4WX8 A;  5EPC A;  2EIU A;  5BMP A;  1WJW A;  5BMN A;  3PMG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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