4QG5A

Crystal structure of phosphoglucomutase from leishmania major at 3.5 angstrom resolution
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
565
structure length
565
Chain Sequence
FQQPNYTANFVQSTFNALHRQGAVPDVLVVGGDGRYYTSEAVQVILKVSAANGVRCVWVGQHGLLSTPAVSTMVRRRRDADGRKATGAFILTASHNPGGPDADFGIKYNSENGGPAPEKLTSQIYEETVKITHIKMAPTLPEVDIHTLGTYTFDDYNFQVEVVDSLADYAAYMQEVFDFEAIRALVQRLDFKVHVDSLHGVSGPYVDRIFHEGLGVPKTSLFRTNVLPDFGGCHPDPNLTYAADLVHVMGLLPDGNANPAMKHISTVPSFGVAFDGDADRNMILGCRFFVNPSDSLAVLAANADCVPFFTQSSSSGLKAVARSMPTSGAVDRVAAAHDFALFEVPTGWKFFGNLMDSKDLYGGKDFNPLLCGEESFGTGSNHIREKDGIWASLFWLSVIAKRNAPGTPLVGVQQIVEEHWATYGRNYYSRYDYEDVSAEAAKAVMDTVENTVVDDVPNLNGVACKTIDNFSYTDPIDGSVSTKQGVRVLFEDGSRFVLRLSGTGSSGATIRLYLEQYMDSATVKSHLAEKTLPTASTALKALIGVALQVSKMESLTGRKTPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative phosphoglucomutase
publication title Crystal structure of phosphoglucomutase from Leishmania major at 3.5 angstrom resolution
rcsb
source organism Leishmania major
molecule tags Isomerase
total genus 123
structure length 565
sequence length 565
chains with identical sequence B, C, D
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2014-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4qg5A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4qg5A02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4qg5A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 4qg5A01
1WJWA 5HSHA 2FKFA 3I3WA 2F7LA 4MRQA 2FUVA 3ENOC 3PMGA 1C4GA 1KFQA 2EHPA 4BJUA 1P5GX 2JPIA 4IL8A 1PCJX 2DKAA 1K35A 5JN5A 1PCMX 4QG5A 5F9CA 1KFIA 1WQAA 3C04A 1TUOA 3UW2A 4WX8A 1P5DX 2DKCA 2H5AX 1C47A 1LXTA 5EPCA 4HJHA 5KL0A 5BMNA 5BMPA 3OLPA 2H4LX 2FKMX 2EIUA 1K2YX 2DKDA 3BKQX 4WXAA 3ENCA 3NA5A 1JDYA 3PDKA 1VKLA 5JMVD 2Z0FA 3RSMA
chains in the Genus database with same CATH superfamily
1MPGA 3D4VA 2FKFA 4EAGA 1PVSA 2F7LA 2OOXA 3DPTA 3I3WA 3ENOC 3N89A 4EAKA 1E42A 1MP9A 2NVMA 3IH7A 1HU0A 1LWWA 2V92A 1YTFA 2I5WA 4BJUA 1CDWA 1KYUA 4B0AA 2XHIA 5JN5A 2MJ7A 2NOIA 4QG5A 3HS8A 1QTSA 4EALA 2QLVA 1AISA 1KFIA 2FGTA 3ULXA 1TUOA 1QNEA 4WX8A 1P5DX 2DKCA 2HKPA 2ZFDB 1QNCA 2HZSA 1C47A 1LXTA 1R4XA 3KRMA 2YH5A 1YQRA 1JFIC 2NOBA 1K2YX 2DKDA 1QNAA 3TDHA 1N39A 1JDYA 1T6AA 3I0WA 1NGMA 1W80A 4PY5A 2NOZA 3EAYA 1N3CA 2D0AA 3OH9A 1WJWA 1M3QA 3CVTA 1KO9A 2NOFA 2G30A 3DPUA 2D0CA 2O3OA 4ROCB 3KTUA 2JPIA 2Y8LA 4IL8A 4RODB 1PCJX 4I8OA 3SNSA 5IYDP 1PCMX 5F9CA 1UT4A 1N3AA 3C04A 1UL7A 3HS9A 5AN4A 2Y8QA 3OH6A 2QRDA 2NLVA 2VJ0A 1LWYA 3OLPA 1QN8A 2FKMX 4DULA 2EIUA 4WZSD 1J3MA 1C9BB 1VTOA 1QNBA 1Q9UA 3PDKA 2JHJA 5JMVD 1VOLB 1XSZA 4ROEB 1QN3A 3CWAA 3PMGA 1C4GA 2NOHA 1KFQA 2HL9A 2NOLA 1M5Q1 2EHPA 1FN7A 1DIZA 1TBAB 3H1ZA 3OSEA 3CW7A 2MZ8A 1QN9A 2QRCA 3UW2A 2HL8A 2PWWA 4D7RA 4EJZA 2Z8UA 4Q11A 1YQMA 1LWVA 1YQLA 1EBMA 3OSMA 2NWVA 3I0XA 2OOYA 3CVSA 1B9KA 2HZMA 1QTPA 2IV8A 2LAEA 3D7QA 2H4LX 5BMNA 1NVPA 3EIKA 3BKQX 4WXAA 1KY6A 1QN6A 3ENCA 5IYCP 5IYBP 4EAIA 3CWUA 4TPSA 2Z0FA 2R5XA 3RSMA 1QN7A 4CFFA 1KYFA 5HSHA 1YQKA 2QR1A 4MRQA 3VN5A 1VOKA 2FUVA 2JOIA 3ASMA 1P5GX 2YA3A 1PCZA 2DKAA 2IV9A 1K35A 4EAJA 3OC3C 2JHNA 1YTBA 2QREA 1RM1A 4C7PA 1QN5A 4D7QA 1WQAA 3RPJA 3CWSA 1TGHA 3T4NA 1EUVA 2H5AX 2V8QA 3F0ZA 3TE5A 1QN4A 2NOEA 1TBPA 5EPCA 4HJHA 5KL0A 1V5SA 1KY7A 5BMPA 3CWTA 3OGDA 1PZDA 2D0BA 1D3UA 3F10A 2V9JA 3NA5A 4EJYA 1NH2A 1VTLE 1VKLA 3OCIA 1M3HA 1KYDA 3OSTA 1UT7A 2EHBD
chains in the Genus database with same CATH topology
1WJWA 5HSHA 2FKFA 3I3WA 2F7LA 4MRQA 2FUVA 3ENOC 3PMGA 1C4GA 1KFQA 2EHPA 4BJUA 1P5GX 2JPIA 4IL8A 1PCJX 2DKAA 1K35A 5JN5A 1PCMX 4QG5A 5F9CA 1KFIA 1WQAA 3C04A 1TUOA 3UW2A 4WX8A 1P5DX 2DKCA 2H5AX 1C47A 1LXTA 5EPCA 4HJHA 5KL0A 5BMNA 5BMPA 3OLPA 2H4LX 2FKMX 2EIUA 1K2YX 2DKDA 3BKQX 4WXAA 3ENCA 3NA5A 1JDYA 3PDKA 1VKLA 5JMVD 2Z0FA 3RSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WJW A;  5HSH A;  2FKF A;  3I3W A;  2F7L A;  4MRQ A;  2FUV A;  3ENO C;  3PMG A;  1C4G A;  1KFQ A;  2EHP A;  4BJU A;  1P5G X;  2JPI A;  4IL8 A;  1PCJ X;  2DKA A;  1K35 A;  5JN5 A;  1PCM X;  4QG5 A;  5F9C A;  1KFI A;  1WQA A;  3C04 A;  1TUO A;  3UW2 A;  4WX8 A;  1P5D X;  2DKC A;  2H5A X;  1C47 A;  1LXT A;  5EPC A;  4HJH A;  5KL0 A;  5BMN A;  5BMP A;  3OLP A;  2H4L X;  2FKM X;  2EIU A;  1K2Y X;  2DKD A;  3BKQ X;  4WXA A;  3ENC A;  3NA5 A;  1JDY A;  3PDK A;  1VKL A;  5JMV D;  2Z0F A;  3RSM A; 
#chains in the Genus database with same CATH topology
 1MPG A;  3D4V A;  2FKF A;  4EAG A;  1PVS A;  2F7L A;  2OOX A;  3DPT A;  3I3W A;  3ENO C;  3N89 A;  4EAK A;  1E42 A;  1MP9 A;  2NVM A;  3IH7 A;  1HU0 A;  1LWW A;  2V92 A;  1YTF A;  2I5W A;  4BJU A;  1CDW A;  1KYU A;  4B0A A;  2XHI A;  5JN5 A;  2MJ7 A;  2NOI A;  4QG5 A;  3HS8 A;  1QTS A;  4EAL A;  2QLV A;  1AIS A;  1KFI A;  2FGT A;  3ULX A;  1TUO A;  1QNE A;  4WX8 A;  1P5D X;  2DKC A;  2HKP A;  2ZFD B;  1QNC A;  2HZS A;  1C47 A;  1LXT A;  1R4X A;  3KRM A;  2YH5 A;  1YQR A;  1JFI C;  2NOB A;  1K2Y X;  2DKD A;  1QNA A;  3TDH A;  1N39 A;  1JDY A;  1T6A A;  3I0W A;  1NGM A;  1W80 A;  4PY5 A;  2NOZ A;  3EAY A;  1N3C A;  2D0A A;  3OH9 A;  1WJW A;  1M3Q A;  3CVT A;  1KO9 A;  2NOF A;  2G30 A;  3DPU A;  2D0C A;  2O3O A;  4ROC B;  3KTU A;  2JPI A;  2Y8L A;  4IL8 A;  4ROD B;  1PCJ X;  4I8O A;  3SNS A;  5IYD P;  1PCM X;  5F9C A;  1UT4 A;  1N3A A;  3C04 A;  1UL7 A;  3HS9 A;  5AN4 A;  2Y8Q A;  3OH6 A;  2QRD A;  2NLV A;  2VJ0 A;  1LWY A;  3OLP A;  1QN8 A;  2FKM X;  4DUL A;  2EIU A;  4WZS D;  1J3M A;  1C9B B;  1VTO A;  1QNB A;  1Q9U A;  3PDK A;  2JHJ A;  5JMV D;  1VOL B;  1XSZ A;  4ROE B;  1QN3 A;  3CWA A;  3PMG A;  1C4G A;  2NOH A;  1KFQ A;  2HL9 A;  2NOL A;  1M5Q 1;  2EHP A;  1FN7 A;  1DIZ A;  1TBA B;  3H1Z A;  3OSE A;  3CW7 A;  2MZ8 A;  1QN9 A;  2QRC A;  3UW2 A;  2HL8 A;  2PWW A;  4D7R A;  4EJZ A;  2Z8U A;  4Q11 A;  1YQM A;  1LWV A;  1YQL A;  1EBM A;  3OSM A;  2NWV A;  3I0X A;  2OOY A;  3CVS A;  1B9K A;  2HZM A;  1QTP A;  2IV8 A;  2LAE A;  3D7Q A;  2H4L X;  5BMN A;  1NVP A;  3EIK A;  3BKQ X;  4WXA A;  1KY6 A;  1QN6 A;  3ENC A;  5IYC P;  5IYB P;  4EAI A;  3CWU A;  4TPS A;  2Z0F A;  2R5X A;  3RSM A;  1QN7 A;  4CFF A;  1KYF A;  5HSH A;  1YQK A;  2QR1 A;  4MRQ A;  3VN5 A;  1VOK A;  2FUV A;  2JOI A;  3ASM A;  1P5G X;  2YA3 A;  1PCZ A;  2DKA A;  2IV9 A;  1K35 A;  4EAJ A;  3OC3 C;  2JHN A;  1YTB A;  2QRE A;  1RM1 A;  4C7P A;  1QN5 A;  4D7Q A;  1WQA A;  3RPJ A;  3CWS A;  1TGH A;  3T4N A;  1EUV A;  2H5A X;  2V8Q A;  3F0Z A;  3TE5 A;  1QN4 A;  2NOE A;  1TBP A;  5EPC A;  4HJH A;  5KL0 A;  1V5S A;  1KY7 A;  5BMP A;  3CWT A;  3OGD A;  1PZD A;  2D0B A;  1D3U A;  3F10 A;  2V9J A;  3NA5 A;  4EJY A;  1NH2 A;  1VTL E;  1VKL A;  3OCI A;  1M3H A;  1KYD A;  3OST A;  1UT7 A;  2EHB D; 
#chains in the Genus database with same CATH homology
 1WJW A;  5HSH A;  2FKF A;  3I3W A;  2F7L A;  4MRQ A;  2FUV A;  3ENO C;  3PMG A;  1C4G A;  1KFQ A;  2EHP A;  4BJU A;  1P5G X;  2JPI A;  4IL8 A;  1PCJ X;  2DKA A;  1K35 A;  5JN5 A;  1PCM X;  4QG5 A;  5F9C A;  1KFI A;  1WQA A;  3C04 A;  1TUO A;  3UW2 A;  4WX8 A;  1P5D X;  2DKC A;  2H5A X;  1C47 A;  1LXT A;  5EPC A;  4HJH A;  5KL0 A;  5BMN A;  5BMP A;  3OLP A;  2H4L X;  2FKM X;  2EIU A;  1K2Y X;  2DKD A;  3BKQ X;  4WXA A;  3ENC A;  3NA5 A;  1JDY A;  3PDK A;  1VKL A;  5JMV D;  2Z0F A;  3RSM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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