1P5GX

Enzyme-ligand complex of p. aeruginosa pmm/pgm
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
source organism Pseudomonas aeruginosa
publication title Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.
pubmed doi rcsb
molecule keywords Phosphomannomutase
total genus 170
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2003-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1p5gX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1p5gX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1p5gX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1p5gX02
3NA5A 3ENCA 3ENOC 2EIUA 1LXTA 2DKAA 5JN5A 2H4LX 2DKCA 4HJHA 4MRQA 1P5GX 3UW2A 2JPIA 1WJWA 4BJUA 3RSMA 2FUVA 2FKMX 3PDKA 1KFQA 1K2YX 1WQAA 3I3WA 5EPCA 1PCJX 2F7LA 5KL0A 2EHPA 2DKDA 4WXAA 1JDYA 4WX8A 5BMNA 3PMGA 1TUOA 1VKLA 2FKFA 5HSHA 1PCMX 4IL8A 5BMPA 1C4GA 2Z0FA 4QG5A 1KFIA 1C47A 3C04A 5F9CA 5JMVD 1P5DX 3BKQX 2H5AX 3OLPA 1K35A
chains in the Genus database with same CATH superfamily
3NA5A 1KYUA 3OCIA 1RM1A 2PWWA 1M3QA 2EIUA 2FGTA 1TBAB 2QR1A 2H4LX 3OSTA 3D4VA 2IV8A 4EJYA 1UT4A 3UW2A 2JPIA 3T4NA 1WJWA 4BJUA 2V9JA 2MJ7A 1NVPA 2FUVA 1YQKA 1QNEA 3DPTA 2HL8A 4ROCB 4RODB 3H1ZA 1N3CA 1WQAA 3I3WA 3OSEA 1QTSA 2LAEA 1MPGA 3N89A 2G30A 3IH7A 1YQMA 1QN9A 4Q11A 3OH9A 3EIKA 1NGMA 2NOBA 1KY7A 2Y8QA 4DULA 1JDYA 1T6AA 5AN4A 4ROEB 1M3HA 3CW7A 5HSHA 4EAIA 2JHJA 1PCMX 4IL8A 4C7PA 3F0ZA 2V92A 1LWWA 4EAGA 5IYBP 1KFIA 1EBMA 1XSZA 3OLPA 3CWTA 3ENOC 5JN5A 3CVSA 4HJHA 1PVSA 3DPUA 1CDWA 4EJZA 1PCZA 2NWVA 1VOLB 2YH5A 2VJ0A 1K2YX 1C9BB 2JHNA 2I5WA 5EPCA 4B0AA 4D7RA 1KO9A 1YTBA 1NH2A 1PCJX 5KL0A 4EAKA 2DKDA 4WXAA 3KRMA 1LWYA 2NOLA 2FKFA 1PZDA 3ULXA 1TBPA 1E42A 1C4GA 3OGDA 4QG5A 1C47A 1AISA 2QLVA 1VTOA 1QNBA 1P5DX 1QN4A 2H5AX 3KTUA 1JFIC 1TGHA 3ENCA 3TDHA 2QRCA 2NVMA 2O3OA 2DKCA 3CWSA 1FN7A 3OSMA 1QN6A 1QTPA 2HKPA 1P5GX 1UL7A 3CVTA 3I0WA 3RSMA 1YTFA 2D0CA 2FKMX 3ASMA 1QN3A 3PDKA 2D0BA 1QN8A 1KFQA 3D7QA 2JOIA 1KYFA 3RPJA 1DIZA 1B9KA 1HU0A 1J3MA 3I0XA 2NOIA 1M5Q1 2F7LA 2NLVA 3HS8A 4EALA 1YQLA 4WX8A 1N39A 3PMGA 2HZSA 3SNSA 2QREA 4TPSA 3CWAA 2NOEA 4EAJA 3HS9A 4D7QA 2Z0FA 1R4XA 1MP9A 1Q9UA 2EHPA 1YQRA 4I8OA 2Y8LA 2YA3A 4WZSD 1QNAA 2QRDA 1LXTA 2DKAA 2NOFA 4MRQA 2NOZA 1UT7A 2NOHA 2OOYA 1KY6A 2IV9A 3F10A 2D0AA 2V8QA 1EUVA 5IYCP 3CWUA 2MZ8A 1QN5A 1KYDA 4PY5A 1LWVA 1W80A 2OOXA 1QN7A 4CFFA 1VTLE 1VOKA 1QNCA 3EAYA 2R5XA 5BMNA 1TUOA 1VKLA 3OC3C 1N3AA 2Z8UA 1D3UA 5IYDP 5BMPA 3TE5A 2ZFDB 3VN5A 2HZMA 5F9CA 3C04A 3OH6A 2XHIA 2HL9A 5JMVD 1V5SA 3BKQX 2EHBD 1K35A
chains in the Genus database with same CATH topology
3NA5A 3ENCA 3ENOC 2EIUA 1LXTA 2DKAA 5JN5A 2H4LX 2DKCA 4HJHA 4MRQA 1P5GX 3UW2A 2JPIA 1WJWA 4BJUA 3RSMA 2FUVA 2FKMX 3PDKA 1KFQA 1K2YX 1WQAA 3I3WA 5EPCA 1PCJX 2F7LA 5KL0A 2EHPA 2DKDA 4WXAA 1JDYA 4WX8A 5BMNA 3PMGA 1TUOA 1VKLA 2FKFA 5HSHA 1PCMX 4IL8A 5BMPA 1C4GA 2Z0FA 4QG5A 1KFIA 1C47A 3C04A 5F9CA 5JMVD 1P5DX 3BKQX 2H5AX 3OLPA 1K35A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NA5 A;  3ENC A;  3ENO C;  2EIU A;  1LXT A;  2DKA A;  5JN5 A;  2H4L X;  2DKC A;  4HJH A;  4MRQ A;  1P5G X;  3UW2 A;  2JPI A;  1WJW A;  4BJU A;  3RSM A;  2FUV A;  2FKM X;  3PDK A;  1KFQ A;  1K2Y X;  1WQA A;  3I3W A;  5EPC A;  1PCJ X;  2F7L A;  5KL0 A;  2EHP A;  2DKD A;  4WXA A;  1JDY A;  4WX8 A;  5BMN A;  3PMG A;  1TUO A;  1VKL A;  2FKF A;  5HSH A;  1PCM X;  4IL8 A;  5BMP A;  1C4G A;  2Z0F A;  4QG5 A;  1KFI A;  1C47 A;  3C04 A;  5F9C A;  5JMV D;  1P5D X;  3BKQ X;  2H5A X;  3OLP A;  1K35 A; 
#chains in the Genus database with same CATH topology
 3NA5 A;  1KYU A;  3OCI A;  1RM1 A;  2PWW A;  1M3Q A;  2EIU A;  2FGT A;  1TBA B;  2QR1 A;  2H4L X;  3OST A;  3D4V A;  2IV8 A;  4EJY A;  1UT4 A;  3UW2 A;  2JPI A;  3T4N A;  1WJW A;  4BJU A;  2V9J A;  2MJ7 A;  1NVP A;  2FUV A;  1YQK A;  1QNE A;  3DPT A;  2HL8 A;  4ROC B;  4ROD B;  3H1Z A;  1N3C A;  1WQA A;  3I3W A;  3OSE A;  1QTS A;  2LAE A;  1MPG A;  3N89 A;  2G30 A;  3IH7 A;  1YQM A;  1QN9 A;  4Q11 A;  3OH9 A;  3EIK A;  1NGM A;  2NOB A;  1KY7 A;  2Y8Q A;  4DUL A;  1JDY A;  1T6A A;  5AN4 A;  4ROE B;  1M3H A;  3CW7 A;  5HSH A;  4EAI A;  2JHJ A;  1PCM X;  4IL8 A;  4C7P A;  3F0Z A;  2V92 A;  1LWW A;  4EAG A;  5IYB P;  1KFI A;  1EBM A;  1XSZ A;  3OLP A;  3CWT A;  3ENO C;  5JN5 A;  3CVS A;  4HJH A;  1PVS A;  3DPU A;  1CDW A;  4EJZ A;  1PCZ A;  2NWV A;  1VOL B;  2YH5 A;  2VJ0 A;  1K2Y X;  1C9B B;  2JHN A;  2I5W A;  5EPC A;  4B0A A;  4D7R A;  1KO9 A;  1YTB A;  1NH2 A;  1PCJ X;  5KL0 A;  4EAK A;  2DKD A;  4WXA A;  3KRM A;  1LWY A;  2NOL A;  2FKF A;  1PZD A;  3ULX A;  1TBP A;  1E42 A;  1C4G A;  3OGD A;  4QG5 A;  1C47 A;  1AIS A;  2QLV A;  1VTO A;  1QNB A;  1P5D X;  1QN4 A;  2H5A X;  3KTU A;  1JFI C;  1TGH A;  3ENC A;  3TDH A;  2QRC A;  2NVM A;  2O3O A;  2DKC A;  3CWS A;  1FN7 A;  3OSM A;  1QN6 A;  1QTP A;  2HKP A;  1P5G X;  1UL7 A;  3CVT A;  3I0W A;  3RSM A;  1YTF A;  2D0C A;  2FKM X;  3ASM A;  1QN3 A;  3PDK A;  2D0B A;  1QN8 A;  1KFQ A;  3D7Q A;  2JOI A;  1KYF A;  3RPJ A;  1DIZ A;  1B9K A;  1HU0 A;  1J3M A;  3I0X A;  2NOI A;  1M5Q 1;  2F7L A;  2NLV A;  3HS8 A;  4EAL A;  1YQL A;  4WX8 A;  1N39 A;  3PMG A;  2HZS A;  3SNS A;  2QRE A;  4TPS A;  3CWA A;  2NOE A;  4EAJ A;  3HS9 A;  4D7Q A;  2Z0F A;  1R4X A;  1MP9 A;  1Q9U A;  2EHP A;  1YQR A;  4I8O A;  2Y8L A;  2YA3 A;  4WZS D;  1QNA A;  2QRD A;  1LXT A;  2DKA A;  2NOF A;  4MRQ A;  2NOZ A;  1UT7 A;  2NOH A;  2OOY A;  1KY6 A;  2IV9 A;  3F10 A;  2D0A A;  2V8Q A;  1EUV A;  5IYC P;  3CWU A;  2MZ8 A;  1QN5 A;  1KYD A;  4PY5 A;  1LWV A;  1W80 A;  2OOX A;  1QN7 A;  4CFF A;  1VTL E;  1VOK A;  1QNC A;  3EAY A;  2R5X A;  5BMN A;  1TUO A;  1VKL A;  3OC3 C;  1N3A A;  2Z8U A;  1D3U A;  5IYD P;  5BMP A;  3TE5 A;  2ZFD B;  3VN5 A;  2HZM A;  5F9C A;  3C04 A;  3OH6 A;  2XHI A;  2HL9 A;  5JMV D;  1V5S A;  3BKQ X;  2EHB D;  1K35 A; 
#chains in the Genus database with same CATH homology
 3NA5 A;  3ENC A;  3ENO C;  2EIU A;  1LXT A;  2DKA A;  5JN5 A;  2H4L X;  2DKC A;  4HJH A;  4MRQ A;  1P5G X;  3UW2 A;  2JPI A;  1WJW A;  4BJU A;  3RSM A;  2FUV A;  2FKM X;  3PDK A;  1KFQ A;  1K2Y X;  1WQA A;  3I3W A;  5EPC A;  1PCJ X;  2F7L A;  5KL0 A;  2EHP A;  2DKD A;  4WXA A;  1JDY A;  4WX8 A;  5BMN A;  3PMG A;  1TUO A;  1VKL A;  2FKF A;  5HSH A;  1PCM X;  4IL8 A;  5BMP A;  1C4G A;  2Z0F A;  4QG5 A;  1KFI A;  1C47 A;  3C04 A;  5F9C A;  5JMV D;  1P5D X;  3BKQ X;  2H5A X;  3OLP A;  1K35 A; 
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