1C4GA

Phosphoglucomutase vanadate based transition state analog complex
Total Genus 146
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
561
structure length
561
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords PROTEIN (ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHOGLUCOMUTASE)
publication title Structural Relationships at the Active Site of Phos in Analog Complexes
rcsb
total genus 146
structure length 561
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1999-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1c4gA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1c4gA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1c4gA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1c4gA01
1PCJX 2JPIA 3C04A 5JMVD 2EIUA 5JN5A 1WQAA 3ENOC 1C4GA 1VKLA 2F7LA 2FUVA 3RSMA 4WXAA 5F9CA 4QG5A 4HJHA 2Z0FA 1KFQA 5BMPA 1WJWA 1TUOA 1JDYA 1K35A 2DKCA 1C47A 1LXTA 2H4LX 3OLPA 4IL8A 4BJUA 3PMGA 5HSHA 2H5AX 3BKQX 5EPCA 2DKDA 4MRQA 3I3WA 2FKMX 2EHPA 3ENCA 5KL0A 3UW2A 3PDKA 1KFIA 1PCMX 3NA5A 5BMNA 1P5DX 1P5GX 2FKFA 2DKAA 1K2YX 4WX8A
chains in the Genus database with same CATH superfamily
2JPIA 1QN5A 2EIUA 1XSZA 5JN5A 1YQLA 1CDWA 4PY5A 3CVTA 1YQKA 1QN7A 1VOLB 1R4XA 1NGMA 2OOXA 1N39A 4TPSA 3OSTA 4EJYA 3ASMA 1E42A 3OH9A 1NVPA 2Z0FA 2JHNA 2IV8A 2I5WA 1MP9A 1TUOA 3IH7A 3VN5A 1TBPA 2H4LX 2Z8UA 2EHBD 4IL8A 2G30A 3PMGA 1KY6A 2NOEA 3OGDA 2QRDA 1MPGA 2QRCA 2QLVA 1D3UA 2V92A 3ENCA 3H1ZA 3OSEA 3CVSA 3D7QA 1KFIA 3PDKA 1P5DX 2V8QA 1P5GX 2PWWA 4EJZA 1VTLE 2NVMA 2DKAA 4WX8A 3CWTA 1KO9A 1YQRA 5JMVD 2D0CA 1M3QA 1KY7A 3DPUA 1V5SA 1WQAA 1QN8A 1VKLA 2F7LA 1QNEA 4QG5A 2HKPA 4ROEB 3OC3C 4HJHA 3D4VA 1KYFA 4Q11A 1T6AA 1QNAA 1EBMA 1KFQA 2NOZA 3OSMA 1LXTA 3ULXA 1TBAB 2NOIA 2JHJA 1QNBA 3SNSA 1LWVA 1M5Q1 1PZDA 2DKDA 4MRQA 1NH2A 1N3CA 1PCMX 2Y8QA 2HZMA 4CFFA 1YQMA 1LWWA 2NOLA 2FKFA 2HZSA 3KRMA 1M3HA 1UT7A 3F0ZA 2FGTA 2O3OA 4I8OA 1Q9UA 1PCJX 2HL9A 1B9KA 1UT4A 3C04A 3I0XA 1DIZA 3HS8A 2YA3A 2QREA 3EIKA 3OCIA 1AISA 1C4GA 2D0BA 2FUVA 4EAGA 4WXAA 5F9CA 1QNCA 1J3MA 4RODB 5IYBP 2NOBA 4D7RA 3I0WA 3OH6A 1JFIC 3CWSA 1TGHA 2NOFA 3DPTA 3KTUA 1K35A 2DKCA 4EAKA 1PCZA 1C47A 4D7QA 3OLPA 4B0AA 5HSHA 2R5XA 2H5AX 1RM1A 1LWYA 3I3WA 2FKMX 1YTFA 3CWUA 1W80A 5KL0A 3UW2A 2XHIA 3NA5A 1YTBA 4EAIA 5BMNA 2NWVA 1EUVA 1KYUA 1PVSA 1QN9A 4DULA 4EALA 1QTPA 3RPJA 3T4NA 2Y8LA 1QN6A 2MJ7A 5AN4A 1VTOA 3ENOC 3RSMA 1HU0A 1QTSA 2V9JA 1C9BB 3EAYA 2ZFDB 5BMPA 1FN7A 2IV9A 3TE5A 4ROCB 1WJWA 1N3AA 1JDYA 5IYCP 4WZSD 3F10A 2D0AA 2LAEA 2JOIA 5IYDP 4BJUA 2NLVA 3HS9A 4EAJA 1QN4A 5EPCA 3BKQX 1UL7A 3CW7A 2MZ8A 2EHPA 2NOHA 2VJ0A 1VOKA 3CWAA 1KYDA 2OOYA 3N89A 4C7PA 1K2YX 2QR1A 3TDHA 2YH5A 1QN3A 2HL8A
chains in the Genus database with same CATH topology
1PCJX 2JPIA 3C04A 5JMVD 2EIUA 5JN5A 1WQAA 3ENOC 1C4GA 1VKLA 2F7LA 2FUVA 3RSMA 4WXAA 5F9CA 4QG5A 4HJHA 2Z0FA 1KFQA 5BMPA 1WJWA 1TUOA 1JDYA 1K35A 2DKCA 1C47A 1LXTA 2H4LX 3OLPA 4IL8A 4BJUA 3PMGA 5HSHA 2H5AX 3BKQX 5EPCA 2DKDA 4MRQA 3I3WA 2FKMX 2EHPA 3ENCA 5KL0A 3UW2A 3PDKA 1KFIA 1PCMX 3NA5A 5BMNA 1P5DX 1P5GX 2FKFA 2DKAA 1K2YX 4WX8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PCJ X;  2JPI A;  3C04 A;  5JMV D;  2EIU A;  5JN5 A;  1WQA A;  3ENO C;  1C4G A;  1VKL A;  2F7L A;  2FUV A;  3RSM A;  4WXA A;  5F9C A;  4QG5 A;  4HJH A;  2Z0F A;  1KFQ A;  5BMP A;  1WJW A;  1TUO A;  1JDY A;  1K35 A;  2DKC A;  1C47 A;  1LXT A;  2H4L X;  3OLP A;  4IL8 A;  4BJU A;  3PMG A;  5HSH A;  2H5A X;  3BKQ X;  5EPC A;  2DKD A;  4MRQ A;  3I3W A;  2FKM X;  2EHP A;  3ENC A;  5KL0 A;  3UW2 A;  3PDK A;  1KFI A;  1PCM X;  3NA5 A;  5BMN A;  1P5D X;  1P5G X;  2FKF A;  2DKA A;  1K2Y X;  4WX8 A; 
#chains in the Genus database with same CATH topology
 2JPI A;  1QN5 A;  2EIU A;  1XSZ A;  5JN5 A;  1YQL A;  1CDW A;  4PY5 A;  3CVT A;  1YQK A;  1QN7 A;  1VOL B;  1R4X A;  1NGM A;  2OOX A;  1N39 A;  4TPS A;  3OST A;  4EJY A;  3ASM A;  1E42 A;  3OH9 A;  1NVP A;  2Z0F A;  2JHN A;  2IV8 A;  2I5W A;  1MP9 A;  1TUO A;  3IH7 A;  3VN5 A;  1TBP A;  2H4L X;  2Z8U A;  2EHB D;  4IL8 A;  2G30 A;  3PMG A;  1KY6 A;  2NOE A;  3OGD A;  2QRD A;  1MPG A;  2QRC A;  2QLV A;  1D3U A;  2V92 A;  3ENC A;  3H1Z A;  3OSE A;  3CVS A;  3D7Q A;  1KFI A;  3PDK A;  1P5D X;  2V8Q A;  1P5G X;  2PWW A;  4EJZ A;  1VTL E;  2NVM A;  2DKA A;  4WX8 A;  3CWT A;  1KO9 A;  1YQR A;  5JMV D;  2D0C A;  1M3Q A;  1KY7 A;  3DPU A;  1V5S A;  1WQA A;  1QN8 A;  1VKL A;  2F7L A;  1QNE A;  4QG5 A;  2HKP A;  4ROE B;  3OC3 C;  4HJH A;  3D4V A;  1KYF A;  4Q11 A;  1T6A A;  1QNA A;  1EBM A;  1KFQ A;  2NOZ A;  3OSM A;  1LXT A;  3ULX A;  1TBA B;  2NOI A;  2JHJ A;  1QNB A;  3SNS A;  1LWV A;  1M5Q 1;  1PZD A;  2DKD A;  4MRQ A;  1NH2 A;  1N3C A;  1PCM X;  2Y8Q A;  2HZM A;  4CFF A;  1YQM A;  1LWW A;  2NOL A;  2FKF A;  2HZS A;  3KRM A;  1M3H A;  1UT7 A;  3F0Z A;  2FGT A;  2O3O A;  4I8O A;  1Q9U A;  1PCJ X;  2HL9 A;  1B9K A;  1UT4 A;  3C04 A;  3I0X A;  1DIZ A;  3HS8 A;  2YA3 A;  2QRE A;  3EIK A;  3OCI A;  1AIS A;  1C4G A;  2D0B A;  2FUV A;  4EAG A;  4WXA A;  5F9C A;  1QNC A;  1J3M A;  4ROD B;  5IYB P;  2NOB A;  4D7R A;  3I0W A;  3OH6 A;  1JFI C;  3CWS A;  1TGH A;  2NOF A;  3DPT A;  3KTU A;  1K35 A;  2DKC A;  4EAK A;  1PCZ A;  1C47 A;  4D7Q A;  3OLP A;  4B0A A;  5HSH A;  2R5X A;  2H5A X;  1RM1 A;  1LWY A;  3I3W A;  2FKM X;  1YTF A;  3CWU A;  1W80 A;  5KL0 A;  3UW2 A;  2XHI A;  3NA5 A;  1YTB A;  4EAI A;  5BMN A;  2NWV A;  1EUV A;  1KYU A;  1PVS A;  1QN9 A;  4DUL A;  4EAL A;  1QTP A;  3RPJ A;  3T4N A;  2Y8L A;  1QN6 A;  2MJ7 A;  5AN4 A;  1VTO A;  3ENO C;  3RSM A;  1HU0 A;  1QTS A;  2V9J A;  1C9B B;  3EAY A;  2ZFD B;  5BMP A;  1FN7 A;  2IV9 A;  3TE5 A;  4ROC B;  1WJW A;  1N3A A;  1JDY A;  5IYC P;  4WZS D;  3F10 A;  2D0A A;  2LAE A;  2JOI A;  5IYD P;  4BJU A;  2NLV A;  3HS9 A;  4EAJ A;  1QN4 A;  5EPC A;  3BKQ X;  1UL7 A;  3CW7 A;  2MZ8 A;  2EHP A;  2NOH A;  2VJ0 A;  1VOK A;  3CWA A;  1KYD A;  2OOY A;  3N89 A;  4C7P A;  1K2Y X;  2QR1 A;  3TDH A;  2YH5 A;  1QN3 A;  2HL8 A; 
#chains in the Genus database with same CATH homology
 1PCJ X;  2JPI A;  3C04 A;  5JMV D;  2EIU A;  5JN5 A;  1WQA A;  3ENO C;  1C4G A;  1VKL A;  2F7L A;  2FUV A;  3RSM A;  4WXA A;  5F9C A;  4QG5 A;  4HJH A;  2Z0F A;  1KFQ A;  5BMP A;  1WJW A;  1TUO A;  1JDY A;  1K35 A;  2DKC A;  1C47 A;  1LXT A;  2H4L X;  3OLP A;  4IL8 A;  4BJU A;  3PMG A;  5HSH A;  2H5A X;  3BKQ X;  5EPC A;  2DKD A;  4MRQ A;  3I3W A;  2FKM X;  2EHP A;  3ENC A;  5KL0 A;  3UW2 A;  3PDK A;  1KFI A;  1PCM X;  3NA5 A;  5BMN A;  1P5D X;  1P5G X;  2FKF A;  2DKA A;  1K2Y X;  4WX8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...