5KL0A

Crystal structure of phosphoglucomutase from xanthomonas citri citri complexed with glucose-1,6-biphosphate
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
448
structure length
447
Chain Sequence
MTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLASPALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTAHNPMDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKTAYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHEPDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTGRFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCKSGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQSGRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTDGISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphoglucomutase
publication title Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
pubmed doi rcsb
source organism Xanthomonas axonopodis pv. citri (strain 306)
total genus 163
structure length 447
sequence length 448
ec nomenclature
pdb deposition date 2016-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 5kl0A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5kl0A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5kl0A01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5kl0A02
2EIUA 2FKMX 5BMNA 3NA5A 1PCMX 4BJUA 1KFQA 1PCJX 3C04A 1C4GA 3ENCA 4HJHA 4WXAA 4WX8A 5BMPA 2DKCA 2DKAA 1WJWA 2H4LX 1VKLA 1KFIA 3I3WA 3BKQX 5EPCA 5JN5A 2DKDA 5KL0A 1JDYA 3UW2A 1K35A 3RSMA 3PDKA 1LXTA 2FKFA 2JPIA 4QG5A 5F9CA 4MRQA 4IL8A 1P5DX 5JMVD 3PMGA 1WQAA 5HSHA 1P5GX 1C47A 2H5AX 2F7LA 2EHPA 2FUVA 3ENOC 3OLPA 1TUOA 2Z0FA 1K2YX
chains in the Genus database with same CATH superfamily
2JHJA 2EIUA 4D7QA 1VTLE 3NA5A 1QN9A 3C04A 2V9JA 1C4GA 4C7PA 2OOXA 4Q11A 2DKCA 3N89A 1XSZA 2V92A 1C9BB 2DKAA 3HS8A 2H4LX 1EUVA 2QREA 1QN8A 1VKLA 3SNSA 1KFIA 2NOIA 5EPCA 2DKDA 2HZMA 3OH6A 5IYDP 2NLVA 2YH5A 2NVMA 3D7QA 5F9CA 1N39A 1VTOA 1JFIC 1LWWA 1R4XA 3PMGA 3CW7A 2NOBA 1E42A 1TBAB 2F7LA 2IV8A 2QRCA 2Z8UA 3OC3C 1N3AA 4PY5A 2NOLA 2FGTA 1UT4A 1M5Q1 2Z0FA 1K2YX 2FKMX 1MP9A 3OCIA 4DULA 4EAKA 1FN7A 3CWUA 1PCMX 4BJUA 1TGHA 2NOFA 3ENCA 5BMPA 4I8OA 2I5WA 5IYBP 1EBMA 1MPGA 1Q9UA 2NOZA 4EALA 3TE5A 3KTUA 3OH9A 3OSMA 2O3OA 4B0AA 2IV9A 2HL8A 3H1ZA 1J3MA 3I0WA 1JDYA 1KY7A 1PCZA 3UW2A 4EAGA 1YTBA 1RM1A 1QN5A 3PDKA 1YQRA 2FKFA 3IH7A 2MJ7A 2Y8QA 1QTSA 1KYDA 3EAYA 1LWVA 5JMVD 3CWAA 1WQAA 1P5GX 1QNEA 2H5AX 1QNCA 3T4NA 3OGDA 2JOIA 2EHPA 2G30A 1UT7A 1B9KA 4ROCB 1LWYA 1KFQA 1PCJX 4HJHA 4WXAA 3HS9A 1QN7A 3I0XA 2LAEA 2OOYA 1YQKA 4CFFA 1AISA 3ASMA 3EIKA 4WZSD 1QN4A 3I3WA 3BKQX 2QRDA 5JN5A 5KL0A 1D3UA 2NOEA 2R5XA 3ULXA 2HZSA 2D0AA 2Y8LA 1QN6A 2HL9A 2XHIA 2QLVA 4ROEB 1KYFA 4RODB 1P5DX 2D0BA 1HU0A 1QNBA 1PZDA 1QNAA 2JHNA 1W80A 1KY6A 5AN4A 3OSEA 1YQLA 1C47A 2V8QA 1NGMA 1PVSA 2PWWA 1YTFA 3CVSA 3DPUA 1CDWA 1M3QA 1NVPA 2FUVA 2ZFDB 2VJ0A 3ENOC 4EAIA 4EAJA 1QN3A 3CVTA 3CWTA 5BMNA 3CWSA 4EJYA 1VOKA 1YQMA 1M3HA 4WX8A 1KYUA 2EHBD 1WJWA 2HKPA 1KO9A 1VOLB 1UL7A 2NWVA 2MZ8A 4D7RA 3RPJA 1V5SA 1DIZA 1K35A 3RSMA 2NOHA 5IYCP 1LXTA 3VN5A 2JPIA 2QR1A 3D4VA 4QG5A 2D0CA 3F10A 4MRQA 4IL8A 1QTPA 2YA3A 3F0ZA 3KRMA 3OSTA 1N3CA 1NH2A 5HSHA 3DPTA 4EJZA 1T6AA 4TPSA 3TDHA 3OLPA 1TBPA 1TUOA
chains in the Genus database with same CATH topology
2EIUA 2FKMX 5BMNA 3NA5A 1PCMX 4BJUA 1KFQA 1PCJX 3C04A 1C4GA 3ENCA 4HJHA 4WXAA 4WX8A 5BMPA 2DKCA 2DKAA 1WJWA 2H4LX 1VKLA 1KFIA 3I3WA 3BKQX 5EPCA 5JN5A 2DKDA 5KL0A 1JDYA 3UW2A 1K35A 3RSMA 3PDKA 1LXTA 2FKFA 2JPIA 4QG5A 5F9CA 4MRQA 4IL8A 1P5DX 5JMVD 3PMGA 1WQAA 5HSHA 1P5GX 1C47A 2H5AX 2F7LA 2EHPA 2FUVA 3ENOC 3OLPA 1TUOA 2Z0FA 1K2YX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EIU A;  2FKM X;  5BMN A;  3NA5 A;  1PCM X;  4BJU A;  1KFQ A;  1PCJ X;  3C04 A;  1C4G A;  3ENC A;  4HJH A;  4WXA A;  4WX8 A;  5BMP A;  2DKC A;  2DKA A;  1WJW A;  2H4L X;  1VKL A;  1KFI A;  3I3W A;  3BKQ X;  5EPC A;  5JN5 A;  2DKD A;  5KL0 A;  1JDY A;  3UW2 A;  1K35 A;  3RSM A;  3PDK A;  1LXT A;  2FKF A;  2JPI A;  4QG5 A;  5F9C A;  4MRQ A;  4IL8 A;  1P5D X;  5JMV D;  3PMG A;  1WQA A;  5HSH A;  1P5G X;  1C47 A;  2H5A X;  2F7L A;  2EHP A;  2FUV A;  3ENO C;  3OLP A;  1TUO A;  2Z0F A;  1K2Y X; 
#chains in the Genus database with same CATH topology
 2JHJ A;  2EIU A;  4D7Q A;  1VTL E;  3NA5 A;  1QN9 A;  3C04 A;  2V9J A;  1C4G A;  4C7P A;  2OOX A;  4Q11 A;  2DKC A;  3N89 A;  1XSZ A;  2V92 A;  1C9B B;  2DKA A;  3HS8 A;  2H4L X;  1EUV A;  2QRE A;  1QN8 A;  1VKL A;  3SNS A;  1KFI A;  2NOI A;  5EPC A;  2DKD A;  2HZM A;  3OH6 A;  5IYD P;  2NLV A;  2YH5 A;  2NVM A;  3D7Q A;  5F9C A;  1N39 A;  1VTO A;  1JFI C;  1LWW A;  1R4X A;  3PMG A;  3CW7 A;  2NOB A;  1E42 A;  1TBA B;  2F7L A;  2IV8 A;  2QRC A;  2Z8U A;  3OC3 C;  1N3A A;  4PY5 A;  2NOL A;  2FGT A;  1UT4 A;  1M5Q 1;  2Z0F A;  1K2Y X;  2FKM X;  1MP9 A;  3OCI A;  4DUL A;  4EAK A;  1FN7 A;  3CWU A;  1PCM X;  4BJU A;  1TGH A;  2NOF A;  3ENC A;  5BMP A;  4I8O A;  2I5W A;  5IYB P;  1EBM A;  1MPG A;  1Q9U A;  2NOZ A;  4EAL A;  3TE5 A;  3KTU A;  3OH9 A;  3OSM A;  2O3O A;  4B0A A;  2IV9 A;  2HL8 A;  3H1Z A;  1J3M A;  3I0W A;  1JDY A;  1KY7 A;  1PCZ A;  3UW2 A;  4EAG A;  1YTB A;  1RM1 A;  1QN5 A;  3PDK A;  1YQR A;  2FKF A;  3IH7 A;  2MJ7 A;  2Y8Q A;  1QTS A;  1KYD A;  3EAY A;  1LWV A;  5JMV D;  3CWA A;  1WQA A;  1P5G X;  1QNE A;  2H5A X;  1QNC A;  3T4N A;  3OGD A;  2JOI A;  2EHP A;  2G30 A;  1UT7 A;  1B9K A;  4ROC B;  1LWY A;  1KFQ A;  1PCJ X;  4HJH A;  4WXA A;  3HS9 A;  1QN7 A;  3I0X A;  2LAE A;  2OOY A;  1YQK A;  4CFF A;  1AIS A;  3ASM A;  3EIK A;  4WZS D;  1QN4 A;  3I3W A;  3BKQ X;  2QRD A;  5JN5 A;  5KL0 A;  1D3U A;  2NOE A;  2R5X A;  3ULX A;  2HZS A;  2D0A A;  2Y8L A;  1QN6 A;  2HL9 A;  2XHI A;  2QLV A;  4ROE B;  1KYF A;  4ROD B;  1P5D X;  2D0B A;  1HU0 A;  1QNB A;  1PZD A;  1QNA A;  2JHN A;  1W80 A;  1KY6 A;  5AN4 A;  3OSE A;  1YQL A;  1C47 A;  2V8Q A;  1NGM A;  1PVS A;  2PWW A;  1YTF A;  3CVS A;  3DPU A;  1CDW A;  1M3Q A;  1NVP A;  2FUV A;  2ZFD B;  2VJ0 A;  3ENO C;  4EAI A;  4EAJ A;  1QN3 A;  3CVT A;  3CWT A;  5BMN A;  3CWS A;  4EJY A;  1VOK A;  1YQM A;  1M3H A;  4WX8 A;  1KYU A;  2EHB D;  1WJW A;  2HKP A;  1KO9 A;  1VOL B;  1UL7 A;  2NWV A;  2MZ8 A;  4D7R A;  3RPJ A;  1V5S A;  1DIZ A;  1K35 A;  3RSM A;  2NOH A;  5IYC P;  1LXT A;  3VN5 A;  2JPI A;  2QR1 A;  3D4V A;  4QG5 A;  2D0C A;  3F10 A;  4MRQ A;  4IL8 A;  1QTP A;  2YA3 A;  3F0Z A;  3KRM A;  3OST A;  1N3C A;  1NH2 A;  5HSH A;  3DPT A;  4EJZ A;  1T6A A;  4TPS A;  3TDH A;  3OLP A;  1TBP A;  1TUO A; 
#chains in the Genus database with same CATH homology
 2EIU A;  2FKM X;  5BMN A;  3NA5 A;  1PCM X;  4BJU A;  1KFQ A;  1PCJ X;  3C04 A;  1C4G A;  3ENC A;  4HJH A;  4WXA A;  4WX8 A;  5BMP A;  2DKC A;  2DKA A;  1WJW A;  2H4L X;  1VKL A;  1KFI A;  3I3W A;  3BKQ X;  5EPC A;  5JN5 A;  2DKD A;  5KL0 A;  1JDY A;  3UW2 A;  1K35 A;  3RSM A;  3PDK A;  1LXT A;  2FKF A;  2JPI A;  4QG5 A;  5F9C A;  4MRQ A;  4IL8 A;  1P5D X;  5JMV D;  3PMG A;  1WQA A;  5HSH A;  1P5G X;  1C47 A;  2H5A X;  2F7L A;  2EHP A;  2FUV A;  3ENO C;  3OLP A;  1TUO A;  2Z0F A;  1K2Y X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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