1K35A

Crystal structure of phosphomannomutase/phosphoglucomutase from p.aeruginosa
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphomannomutase
publication title Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 151
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2001-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1k35A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1k35A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1k35A01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1k35A02
2FUVA 1P5DX 3I3WA 5F9CA 1PCJX 3OLPA 2DKDA 3ENOC 4HJHA 3ENCA 1C4GA 1PCMX 3PDKA 2JPIA 5JMVD 1KFIA 2FKFA 1TUOA 2F7LA 2H4LX 1KFQA 3C04A 5BMPA 2DKCA 1LXTA 5JN5A 3BKQX 4IL8A 4MRQA 3UW2A 2EHPA 2FKMX 1K35A 2DKAA 1K2YX 5EPCA 1WJWA 5HSHA 1JDYA 3RSMA 4WX8A 2Z0FA 4WXAA 5KL0A 1P5GX 2EIUA 3NA5A 1VKLA 5BMNA 2H5AX 1WQAA 1C47A 4BJUA 3PMGA 4QG5A
chains in the Genus database with same CATH superfamily
4EAJA 2D0CA 2VJ0A 1QTPA 3OSTA 2DKDA 3ENOC 4EALA 1E42A 2FGTA 5IYBP 1N3CA 1YQRA 2JPIA 2YH5A 4WZSD 2JHNA 4RODB 1QTSA 4D7QA 3OGDA 1LWVA 1PCZA 1MPGA 5IYDP 2H4LX 1NGMA 1PZDA 2NOHA 2QR1A 3OH6A 1LXTA 4CFFA 5JN5A 4MRQA 2FKMX 1K35A 3TE5A 1K2YX 1LWWA 2OOYA 1LWYA 3CVSA 1JDYA 2Z0FA 5KL0A 5BMNA 2H5AX 1WQAA 1C47A 1MP9A 2HZMA 2D0BA 2NVMA 1QN8A 4QG5A 3RPJA 2QRDA 2QLVA 1NVPA 2HL9A 3ASMA 1TGHA 1N39A 2NWVA 3OC3C 4HJHA 1KYDA 3T4NA 2R5XA 3ENCA 1C4GA 2HZSA 3DPTA 1KFIA 3I0XA 1J3MA 2OOXA 1TUOA 3OCIA 1VTLE 1YTBA 4EJYA 2NOBA 1UT7A 5BMPA 3PMGA 4IL8A 2EHPA 1RM1A 5IYCP 4D7RA 4C7PA 5HSHA 1R4XA 1QN5A 3DPUA 4ROEB 1D3UA 2QRCA 2LAEA 4EAIA 4DULA 2HKPA 3N89A 1FN7A 2FUVA 2NOZA 3I3WA 5F9CA 2PWWA 3OLPA 1VOKA 1KY7A 2Y8QA 1V5SA 1HU0A 2JOIA 3KTUA 1CDWA 1YQKA 3PDKA 1PCMX 2V9JA 2NLVA 1EBMA 5JMVD 2O3OA 2D0AA 1UL7A 3KRMA 2NOFA 1JFIC 2ZFDB 1VOLB 4EAKA 2NOLA 1KY6A 3OSMA 1M3HA 3UW2A 4EJZA 2IV9A 1EUVA 1Q9UA 4PY5A 1WJWA 3ULXA 1QN3A 2QREA 3RSMA 3EAYA 1QN9A 1T6AA 3F0ZA 2EHBD 4WXAA 2MJ7A 2V8QA 2MZ8A 2NOIA 3CVTA 1QN7A 2G30A 4ROCB 4BJUA 3CWAA 3TDHA 3I0WA 1P5DX 4EAGA 1TBPA 1KYFA 1PCJX 1NH2A 1QNCA 1YQMA 3HS8A 1DIZA 1QN6A 3CW7A 1KO9A 3SNSA 2XHIA 1N3AA 1QNBA 2NOEA 2HL8A 1YTFA 1W80A 1PVSA 3H1ZA 1M3QA 5AN4A 3OH9A 2FKFA 2F7LA 1KYUA 1KFQA 2V92A 3C04A 1VTOA 1YQLA 2DKCA 2Z8UA 3OSEA 1QN4A 3CWTA 2JHJA 2YA3A 1UT4A 1XSZA 3BKQX 4B0AA 4I8OA 1AISA 2Y8LA 1M5Q1 2DKAA 5EPCA 3IH7A 3D4VA 2I5WA 3VN5A 2IV8A 3CWUA 4WX8A 3EIKA 1B9KA 1QNAA 1P5GX 1QNEA 3NA5A 1TBAB 1VKLA 4Q11A 1C9BB 3F10A 4TPSA 2EIUA 3HS9A 3D7QA 3CWSA
chains in the Genus database with same CATH topology
2FUVA 1P5DX 3I3WA 5F9CA 1PCJX 3OLPA 2DKDA 3ENOC 4HJHA 3ENCA 1C4GA 1PCMX 3PDKA 2JPIA 5JMVD 1KFIA 2FKFA 1TUOA 2F7LA 2H4LX 1KFQA 3C04A 5BMPA 2DKCA 1LXTA 5JN5A 3BKQX 4IL8A 4MRQA 3UW2A 2EHPA 2FKMX 1K35A 2DKAA 1K2YX 5EPCA 1WJWA 5HSHA 1JDYA 3RSMA 4WX8A 2Z0FA 4WXAA 5KL0A 1P5GX 2EIUA 3NA5A 1VKLA 5BMNA 2H5AX 1WQAA 1C47A 4BJUA 3PMGA 4QG5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FUV A;  1P5D X;  3I3W A;  5F9C A;  1PCJ X;  3OLP A;  2DKD A;  3ENO C;  4HJH A;  3ENC A;  1C4G A;  1PCM X;  3PDK A;  2JPI A;  5JMV D;  1KFI A;  2FKF A;  1TUO A;  2F7L A;  2H4L X;  1KFQ A;  3C04 A;  5BMP A;  2DKC A;  1LXT A;  5JN5 A;  3BKQ X;  4IL8 A;  4MRQ A;  3UW2 A;  2EHP A;  2FKM X;  1K35 A;  2DKA A;  1K2Y X;  5EPC A;  1WJW A;  5HSH A;  1JDY A;  3RSM A;  4WX8 A;  2Z0F A;  4WXA A;  5KL0 A;  1P5G X;  2EIU A;  3NA5 A;  1VKL A;  5BMN A;  2H5A X;  1WQA A;  1C47 A;  4BJU A;  3PMG A;  4QG5 A; 
#chains in the Genus database with same CATH topology
 4EAJ A;  2D0C A;  2VJ0 A;  1QTP A;  3OST A;  2DKD A;  3ENO C;  4EAL A;  1E42 A;  2FGT A;  5IYB P;  1N3C A;  1YQR A;  2JPI A;  2YH5 A;  4WZS D;  2JHN A;  4ROD B;  1QTS A;  4D7Q A;  3OGD A;  1LWV A;  1PCZ A;  1MPG A;  5IYD P;  2H4L X;  1NGM A;  1PZD A;  2NOH A;  2QR1 A;  3OH6 A;  1LXT A;  4CFF A;  5JN5 A;  4MRQ A;  2FKM X;  1K35 A;  3TE5 A;  1K2Y X;  1LWW A;  2OOY A;  1LWY A;  3CVS A;  1JDY A;  2Z0F A;  5KL0 A;  5BMN A;  2H5A X;  1WQA A;  1C47 A;  1MP9 A;  2HZM A;  2D0B A;  2NVM A;  1QN8 A;  4QG5 A;  3RPJ A;  2QRD A;  2QLV A;  1NVP A;  2HL9 A;  3ASM A;  1TGH A;  1N39 A;  2NWV A;  3OC3 C;  4HJH A;  1KYD A;  3T4N A;  2R5X A;  3ENC A;  1C4G A;  2HZS A;  3DPT A;  1KFI A;  3I0X A;  1J3M A;  2OOX A;  1TUO A;  3OCI A;  1VTL E;  1YTB A;  4EJY A;  2NOB A;  1UT7 A;  5BMP A;  3PMG A;  4IL8 A;  2EHP A;  1RM1 A;  5IYC P;  4D7R A;  4C7P A;  5HSH A;  1R4X A;  1QN5 A;  3DPU A;  4ROE B;  1D3U A;  2QRC A;  2LAE A;  4EAI A;  4DUL A;  2HKP A;  3N89 A;  1FN7 A;  2FUV A;  2NOZ A;  3I3W A;  5F9C A;  2PWW A;  3OLP A;  1VOK A;  1KY7 A;  2Y8Q A;  1V5S A;  1HU0 A;  2JOI A;  3KTU A;  1CDW A;  1YQK A;  3PDK A;  1PCM X;  2V9J A;  2NLV A;  1EBM A;  5JMV D;  2O3O A;  2D0A A;  1UL7 A;  3KRM A;  2NOF A;  1JFI C;  2ZFD B;  1VOL B;  4EAK A;  2NOL A;  1KY6 A;  3OSM A;  1M3H A;  3UW2 A;  4EJZ A;  2IV9 A;  1EUV A;  1Q9U A;  4PY5 A;  1WJW A;  3ULX A;  1QN3 A;  2QRE A;  3RSM A;  3EAY A;  1QN9 A;  1T6A A;  3F0Z A;  2EHB D;  4WXA A;  2MJ7 A;  2V8Q A;  2MZ8 A;  2NOI A;  3CVT A;  1QN7 A;  2G30 A;  4ROC B;  4BJU A;  3CWA A;  3TDH A;  3I0W A;  1P5D X;  4EAG A;  1TBP A;  1KYF A;  1PCJ X;  1NH2 A;  1QNC A;  1YQM A;  3HS8 A;  1DIZ A;  1QN6 A;  3CW7 A;  1KO9 A;  3SNS A;  2XHI A;  1N3A A;  1QNB A;  2NOE A;  2HL8 A;  1YTF A;  1W80 A;  1PVS A;  3H1Z A;  1M3Q A;  5AN4 A;  3OH9 A;  2FKF A;  2F7L A;  1KYU A;  1KFQ A;  2V92 A;  3C04 A;  1VTO A;  1YQL A;  2DKC A;  2Z8U A;  3OSE A;  1QN4 A;  3CWT A;  2JHJ A;  2YA3 A;  1UT4 A;  1XSZ A;  3BKQ X;  4B0A A;  4I8O A;  1AIS A;  2Y8L A;  1M5Q 1;  2DKA A;  5EPC A;  3IH7 A;  3D4V A;  2I5W A;  3VN5 A;  2IV8 A;  3CWU A;  4WX8 A;  3EIK A;  1B9K A;  1QNA A;  1P5G X;  1QNE A;  3NA5 A;  1TBA B;  1VKL A;  4Q11 A;  1C9B B;  3F10 A;  4TPS A;  2EIU A;  3HS9 A;  3D7Q A;  3CWS A; 
#chains in the Genus database with same CATH homology
 2FUV A;  1P5D X;  3I3W A;  5F9C A;  1PCJ X;  3OLP A;  2DKD A;  3ENO C;  4HJH A;  3ENC A;  1C4G A;  1PCM X;  3PDK A;  2JPI A;  5JMV D;  1KFI A;  2FKF A;  1TUO A;  2F7L A;  2H4L X;  1KFQ A;  3C04 A;  5BMP A;  2DKC A;  1LXT A;  5JN5 A;  3BKQ X;  4IL8 A;  4MRQ A;  3UW2 A;  2EHP A;  2FKM X;  1K35 A;  2DKA A;  1K2Y X;  5EPC A;  1WJW A;  5HSH A;  1JDY A;  3RSM A;  4WX8 A;  2Z0F A;  4WXA A;  5KL0 A;  1P5G X;  2EIU A;  3NA5 A;  1VKL A;  5BMN A;  2H5A X;  1WQA A;  1C47 A;  4BJU A;  3PMG A;  4QG5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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