2H4LX

Complex of pmm/pgm with ribose 1-phosphate
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphomannomutase/phosphoglucomutase
publication title Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and an inhibitor.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 165
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2006-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2h4lX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h4lX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h4lX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h4lX02
4HJHA 1PCMX 4MRQA 5BMPA 3PMGA 2FKFA 4QG5A 2EHPA 1TUOA 3ENCA 5JN5A 5JMVD 2F7LA 2DKDA 1WQAA 1KFIA 4BJUA 1C4GA 5HSHA 3OLPA 1JDYA 1PCJX 3PDKA 3NA5A 4WX8A 3UW2A 5KL0A 1KFQA 5EPCA 3C04A 1P5DX 2H4LX 2FUVA 3BKQX 3ENOC 5F9CA 2H5AX 1LXTA 2Z0FA 1VKLA 4WXAA 2EIUA 4IL8A 2DKCA 3RSMA 1K2YX 2FKMX 3I3WA 5BMNA 1C47A 1P5GX 2JPIA 1K35A 2DKAA 1WJWA
chains in the Genus database with same CATH superfamily
4HJHA 4C7PA 4EAJA 1QNCA 2D0AA 5BMPA 4MRQA 1YQRA 2QLVA 2HZSA 4QG5A 2EHPA 1N39A 1QN8A 3KTUA 2ZFDB 1KFIA 4BJUA 1C4GA 5HSHA 1QTPA 4WZSD 2OOYA 4I8OA 1QN4A 5KL0A 3CVTA 1VOKA 3C04A 1RM1A 2PWWA 4D7RA 5IYDP 3OH9A 2NWVA 5F9CA 3I0WA 1LWYA 2HKPA 2XHIA 1QN5A 1KY7A 2QR1A 2Y8LA 1CDWA 2FKMX 3EAYA 3CWAA 1KYFA 3F10A 4EJYA 5IYBP 3TDHA 3OSTA 2EHBD 1KYUA 2JPIA 2FKFA 2DKAA 3CW7A 1MP9A 1R4XA 3OH6A 3PMGA 3CVSA 2NOEA 4EAIA 3ENCA 2O3OA 3KRMA 5JMVD 2F7LA 2NOLA 1N3AA 1NGMA 2HL8A 1AISA 1E42A 3PDKA 1YQMA 1W80A 2V8QA 3DPTA 2FGTA 4EALA 1MPGA 2D0CA 3ULXA 1PVSA 2FUVA 3BKQX 1QN9A 1C9BB 1QNBA 1QNEA 3H1ZA 4CFFA 3RPJA 4ROCB 3CWUA 2HL9A 1J3MA 2MJ7A 2I5WA 2DKCA 2YH5A 3RSMA 3T4NA 2G30A 3I3WA 1QTSA 2QRCA 5AN4A 1QN6A 1C47A 3SNSA 4DULA 3OSEA 1KYDA 1YQKA 1NVPA 2VJ0A 1EBMA 1EUVA 1PZDA 3N89A 1LWVA 2V9JA 3D4VA 4ROEB 1NH2A 1UL7A 3TE5A 2QREA 3OLPA 4EAKA 1T6AA 1JDYA 1LWWA 1PCJX 2YA3A 2Y8QA 2NOZA 3UW2A 4WX8A 1KFQA 4B0AA 1JFIC 4Q11A 3HS9A 2QRDA 3EIKA 1XSZA 2JHJA 1QN3A 2NOIA 1VKLA 1KY6A 1VTLE 2EIUA 3OSMA 2NOHA 1K2YX 2NOBA 1D3UA 2MZ8A 3OCIA 4TPSA 3VN5A 3OGDA 1YTBA 1TBAB 3HS8A 1PCMX 2D0BA 2LAEA 1FN7A 1YQLA 4RODB 1M5Q1 1TUOA 3OC3C 1HU0A 3CWTA 5JN5A 1N3CA 2DKDA 1WQAA 3IH7A 2OOXA 1PCZA 3CWSA 1M3HA 2R5XA 3NA5A 5EPCA 2JOIA 1P5DX 2V92A 2H4LX 5IYCP 1UT4A 4EAGA 1YTFA 3ENOC 4PY5A 1DIZA 2NOFA 2IV8A 2Z8UA 2NLVA 1VOLB 3ASMA 1V5SA 1LXTA 2H5AX 2Z0FA 1VTOA 1B9KA 4WXAA 3F0ZA 4IL8A 2HZMA 1QNAA 3I0XA 2JHNA 1KO9A 3DPUA 3D7QA 2IV9A 4D7QA 4EJZA 1QN7A 2NVMA 1Q9UA 5BMNA 1M3QA 1TBPA 1P5GX 1TGHA 1K35A 1UT7A 1WJWA
chains in the Genus database with same CATH topology
4HJHA 1PCMX 4MRQA 5BMPA 3PMGA 2FKFA 4QG5A 2EHPA 1TUOA 3ENCA 5JN5A 5JMVD 2F7LA 2DKDA 1WQAA 1KFIA 4BJUA 1C4GA 5HSHA 3OLPA 1JDYA 1PCJX 3PDKA 3NA5A 4WX8A 3UW2A 5KL0A 1KFQA 5EPCA 3C04A 1P5DX 2H4LX 2FUVA 3BKQX 3ENOC 5F9CA 2H5AX 1LXTA 2Z0FA 1VKLA 4WXAA 2EIUA 4IL8A 2DKCA 3RSMA 1K2YX 2FKMX 3I3WA 5BMNA 1C47A 1P5GX 2JPIA 1K35A 2DKAA 1WJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HJH A;  1PCM X;  4MRQ A;  5BMP A;  3PMG A;  2FKF A;  4QG5 A;  2EHP A;  1TUO A;  3ENC A;  5JN5 A;  5JMV D;  2F7L A;  2DKD A;  1WQA A;  1KFI A;  4BJU A;  1C4G A;  5HSH A;  3OLP A;  1JDY A;  1PCJ X;  3PDK A;  3NA5 A;  4WX8 A;  3UW2 A;  5KL0 A;  1KFQ A;  5EPC A;  3C04 A;  1P5D X;  2H4L X;  2FUV A;  3BKQ X;  3ENO C;  5F9C A;  2H5A X;  1LXT A;  2Z0F A;  1VKL A;  4WXA A;  2EIU A;  4IL8 A;  2DKC A;  3RSM A;  1K2Y X;  2FKM X;  3I3W A;  5BMN A;  1C47 A;  1P5G X;  2JPI A;  1K35 A;  2DKA A;  1WJW A; 
#chains in the Genus database with same CATH topology
 4HJH A;  4C7P A;  4EAJ A;  1QNC A;  2D0A A;  5BMP A;  4MRQ A;  1YQR A;  2QLV A;  2HZS A;  4QG5 A;  2EHP A;  1N39 A;  1QN8 A;  3KTU A;  2ZFD B;  1KFI A;  4BJU A;  1C4G A;  5HSH A;  1QTP A;  4WZS D;  2OOY A;  4I8O A;  1QN4 A;  5KL0 A;  3CVT A;  1VOK A;  3C04 A;  1RM1 A;  2PWW A;  4D7R A;  5IYD P;  3OH9 A;  2NWV A;  5F9C A;  3I0W A;  1LWY A;  2HKP A;  2XHI A;  1QN5 A;  1KY7 A;  2QR1 A;  2Y8L A;  1CDW A;  2FKM X;  3EAY A;  3CWA A;  1KYF A;  3F10 A;  4EJY A;  5IYB P;  3TDH A;  3OST A;  2EHB D;  1KYU A;  2JPI A;  2FKF A;  2DKA A;  3CW7 A;  1MP9 A;  1R4X A;  3OH6 A;  3PMG A;  3CVS A;  2NOE A;  4EAI A;  3ENC A;  2O3O A;  3KRM A;  5JMV D;  2F7L A;  2NOL A;  1N3A A;  1NGM A;  2HL8 A;  1AIS A;  1E42 A;  3PDK A;  1YQM A;  1W80 A;  2V8Q A;  3DPT A;  2FGT A;  4EAL A;  1MPG A;  2D0C A;  3ULX A;  1PVS A;  2FUV A;  3BKQ X;  1QN9 A;  1C9B B;  1QNB A;  1QNE A;  3H1Z A;  4CFF A;  3RPJ A;  4ROC B;  3CWU A;  2HL9 A;  1J3M A;  2MJ7 A;  2I5W A;  2DKC A;  2YH5 A;  3RSM A;  3T4N A;  2G30 A;  3I3W A;  1QTS A;  2QRC A;  5AN4 A;  1QN6 A;  1C47 A;  3SNS A;  4DUL A;  3OSE A;  1KYD A;  1YQK A;  1NVP A;  2VJ0 A;  1EBM A;  1EUV A;  1PZD A;  3N89 A;  1LWV A;  2V9J A;  3D4V A;  4ROE B;  1NH2 A;  1UL7 A;  3TE5 A;  2QRE A;  3OLP A;  4EAK A;  1T6A A;  1JDY A;  1LWW A;  1PCJ X;  2YA3 A;  2Y8Q A;  2NOZ A;  3UW2 A;  4WX8 A;  1KFQ A;  4B0A A;  1JFI C;  4Q11 A;  3HS9 A;  2QRD A;  3EIK A;  1XSZ A;  2JHJ A;  1QN3 A;  2NOI A;  1VKL A;  1KY6 A;  1VTL E;  2EIU A;  3OSM A;  2NOH A;  1K2Y X;  2NOB A;  1D3U A;  2MZ8 A;  3OCI A;  4TPS A;  3VN5 A;  3OGD A;  1YTB A;  1TBA B;  3HS8 A;  1PCM X;  2D0B A;  2LAE A;  1FN7 A;  1YQL A;  4ROD B;  1M5Q 1;  1TUO A;  3OC3 C;  1HU0 A;  3CWT A;  5JN5 A;  1N3C A;  2DKD A;  1WQA A;  3IH7 A;  2OOX A;  1PCZ A;  3CWS A;  1M3H A;  2R5X A;  3NA5 A;  5EPC A;  2JOI A;  1P5D X;  2V92 A;  2H4L X;  5IYC P;  1UT4 A;  4EAG A;  1YTF A;  3ENO C;  4PY5 A;  1DIZ A;  2NOF A;  2IV8 A;  2Z8U A;  2NLV A;  1VOL B;  3ASM A;  1V5S A;  1LXT A;  2H5A X;  2Z0F A;  1VTO A;  1B9K A;  4WXA A;  3F0Z A;  4IL8 A;  2HZM A;  1QNA A;  3I0X A;  2JHN A;  1KO9 A;  3DPU A;  3D7Q A;  2IV9 A;  4D7Q A;  4EJZ A;  1QN7 A;  2NVM A;  1Q9U A;  5BMN A;  1M3Q A;  1TBP A;  1P5G X;  1TGH A;  1K35 A;  1UT7 A;  1WJW A; 
#chains in the Genus database with same CATH homology
 4HJH A;  1PCM X;  4MRQ A;  5BMP A;  3PMG A;  2FKF A;  4QG5 A;  2EHP A;  1TUO A;  3ENC A;  5JN5 A;  5JMV D;  2F7L A;  2DKD A;  1WQA A;  1KFI A;  4BJU A;  1C4G A;  5HSH A;  3OLP A;  1JDY A;  1PCJ X;  3PDK A;  3NA5 A;  4WX8 A;  3UW2 A;  5KL0 A;  1KFQ A;  5EPC A;  3C04 A;  1P5D X;  2H4L X;  2FUV A;  3BKQ X;  3ENO C;  5F9C A;  2H5A X;  1LXT A;  2Z0F A;  1VKL A;  4WXA A;  2EIU A;  4IL8 A;  2DKC A;  3RSM A;  1K2Y X;  2FKM X;  3I3W A;  5BMN A;  1C47 A;  1P5G X;  2JPI A;  1K35 A;  2DKA A;  1WJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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