2H4LX

Complex of pmm/pgm with ribose 1-phosphate
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphomannomutase/phosphoglucomutase
publication title Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and an inhibitor.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 165
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2006-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2h4lX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h4lX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h4lX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2h4lX02
1K2YX 4IL8A 1KFIA 2DKDA 4HJHA 4WX8A 1VKLA 2DKAA 3C04A 5BMPA 4BJUA 3OLPA 1K35A 5F9CA 5JMVD 1LXTA 3RSMA 2FKFA 2FKMX 1C4GA 2JPIA 1P5GX 1TUOA 3BKQX 1JDYA 1WQAA 3PDKA 5EPCA 1KFQA 2H4LX 3PMGA 2DKCA 3NA5A 1P5DX 2H5AX 3ENOC 1PCMX 5BMNA 5JN5A 2EHPA 1C47A 4QG5A 2FUVA 5HSHA 3ENCA 5KL0A 1PCJX 2Z0FA 4WXAA 4MRQA 3UW2A 2EIUA 1WJWA 2F7LA 3I3WA
chains in the Genus database with same CATH superfamily
2JHJA 3ULXA 1YTFA 2NOEA 4IL8A 5AN4A 3I0XA 3OSEA 3CWAA 1E42A 1EUVA 5IYDP 3I0WA 2QREA 1VKLA 2Z8UA 2OOXA 1FN7A 1QTPA 5BMPA 1Q9UA 4BJUA 4C7PA 5JMVD 1YQMA 1LXTA 5IYBP 4PY5A 2LAEA 2NOLA 1C4GA 4RODB 1TUOA 1QN5A 1PCZA 3RPJA 2V9JA 4EAGA 2DKCA 1N3CA 1TBPA 1JFIC 2H5AX 1N3AA 2HL9A 1N39A 2JHNA 1C47A 2FUVA 2G30A 2V92A 2D0AA 2IV9A 1QN6A 3VN5A 1MP9A 3SNSA 1M3HA 1QNEA 2NOZA 2F7LA 1KYFA 3DPUA 2OOYA 1TBAB 4ROCB 2R5XA 4D7RA 3CVTA 3CWTA 1TGHA 2HKPA 3OC3C 1MPGA 2EHBD 4D7QA 3RSMA 2NOBA 1KO9A 1AISA 2FKMX 4B0AA 4DULA 4CFFA 1YTBA 3BKQX 1WQAA 5EPCA 2ZFDB 3OSMA 1QNAA 3OGDA 1B9KA 1QN8A 1P5DX 1KYUA 1CDWA 2IV8A 4I8OA 3CWSA 5HSHA 1NVPA 3ENCA 2EIUA 2Z0FA 3D7QA 4WXAA 1QN7A 1UT4A 1EBMA 3TDHA 1WJWA 1UT7A 4WZSD 1NH2A 2YH5A 1QN9A 2XHIA 1QN4A 3EAYA 4EAJA 1VTOA 2NLVA 3KRMA 3CWUA 2HL8A 3KTUA 4HJHA 4WX8A 2QR1A 2QLVA 1QTSA 3C04A 3OLPA 4EJYA 4EAKA 3OCIA 1DIZA 4EJZA 1QNCA 3OH6A 1VOKA 3H1ZA 3HS9A 2NWVA 1JDYA 1KY7A 3CVSA 3PDKA 2HZMA 1VTLE 2MJ7A 5BMNA 2I5WA 3ENOC 1PCMX 4EALA 3DPTA 3EIKA 1HU0A 1RM1A 2D0BA 3D4VA 2QRDA 3F10A 4Q11A 1PCJX 5KL0A 4ROEB 4MRQA 1KY6A 2NOIA 1LWVA 1YQRA 1QNBA 2NOFA 3F0ZA 1LWWA 1J3MA 4EAIA 1K2YX 1LWYA 2QRCA 3IH7A 1KFIA 3T4NA 2Y8QA 2DKDA 1PZDA 4TPSA 1YQKA 1XSZA 2DKAA 5IYCP 5F9CA 3HS8A 1D3UA 1K35A 2MZ8A 2D0CA 1C9BB 2HZSA 2FKFA 2PWWA 1M5Q1 1W80A 2Y8LA 3OH9A 2JPIA 1P5GX 1V5SA 1NGMA 1KFQA 1M3QA 2H4LX 3PMGA 2O3OA 2FGTA 3NA5A 2JOIA 2V8QA 2YA3A 3TE5A 5JN5A 1T6AA 2NOHA 2EHPA 1PVSA 3OSTA 4QG5A 1VOLB 1KYDA 1QN3A 2NVMA 3ASMA 3UW2A 1UL7A 1R4XA 3CW7A 1YQLA 3N89A 2VJ0A 3I3WA
chains in the Genus database with same CATH topology
1K2YX 4IL8A 1KFIA 2DKDA 4HJHA 4WX8A 1VKLA 2DKAA 3C04A 5BMPA 4BJUA 3OLPA 1K35A 5F9CA 5JMVD 1LXTA 3RSMA 2FKFA 2FKMX 1C4GA 2JPIA 1P5GX 1TUOA 3BKQX 1JDYA 1WQAA 3PDKA 5EPCA 1KFQA 2H4LX 3PMGA 2DKCA 3NA5A 1P5DX 2H5AX 3ENOC 1PCMX 5BMNA 5JN5A 2EHPA 1C47A 4QG5A 2FUVA 5HSHA 3ENCA 5KL0A 1PCJX 2Z0FA 4WXAA 4MRQA 3UW2A 2EIUA 1WJWA 2F7LA 3I3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K2Y X;  4IL8 A;  1KFI A;  2DKD A;  4HJH A;  4WX8 A;  1VKL A;  2DKA A;  3C04 A;  5BMP A;  4BJU A;  3OLP A;  1K35 A;  5F9C A;  5JMV D;  1LXT A;  3RSM A;  2FKF A;  2FKM X;  1C4G A;  2JPI A;  1P5G X;  1TUO A;  3BKQ X;  1JDY A;  1WQA A;  3PDK A;  5EPC A;  1KFQ A;  2H4L X;  3PMG A;  2DKC A;  3NA5 A;  1P5D X;  2H5A X;  3ENO C;  1PCM X;  5BMN A;  5JN5 A;  2EHP A;  1C47 A;  4QG5 A;  2FUV A;  5HSH A;  3ENC A;  5KL0 A;  1PCJ X;  2Z0F A;  4WXA A;  4MRQ A;  3UW2 A;  2EIU A;  1WJW A;  2F7L A;  3I3W A; 
#chains in the Genus database with same CATH topology
 2JHJ A;  3ULX A;  1YTF A;  2NOE A;  4IL8 A;  5AN4 A;  3I0X A;  3OSE A;  3CWA A;  1E42 A;  1EUV A;  5IYD P;  3I0W A;  2QRE A;  1VKL A;  2Z8U A;  2OOX A;  1FN7 A;  1QTP A;  5BMP A;  1Q9U A;  4BJU A;  4C7P A;  5JMV D;  1YQM A;  1LXT A;  5IYB P;  4PY5 A;  2LAE A;  2NOL A;  1C4G A;  4ROD B;  1TUO A;  1QN5 A;  1PCZ A;  3RPJ A;  2V9J A;  4EAG A;  2DKC A;  1N3C A;  1TBP A;  1JFI C;  2H5A X;  1N3A A;  2HL9 A;  1N39 A;  2JHN A;  1C47 A;  2FUV A;  2G30 A;  2V92 A;  2D0A A;  2IV9 A;  1QN6 A;  3VN5 A;  1MP9 A;  3SNS A;  1M3H A;  1QNE A;  2NOZ A;  2F7L A;  1KYF A;  3DPU A;  2OOY A;  1TBA B;  4ROC B;  2R5X A;  4D7R A;  3CVT A;  3CWT A;  1TGH A;  2HKP A;  3OC3 C;  1MPG A;  2EHB D;  4D7Q A;  3RSM A;  2NOB A;  1KO9 A;  1AIS A;  2FKM X;  4B0A A;  4DUL A;  4CFF A;  1YTB A;  3BKQ X;  1WQA A;  5EPC A;  2ZFD B;  3OSM A;  1QNA A;  3OGD A;  1B9K A;  1QN8 A;  1P5D X;  1KYU A;  1CDW A;  2IV8 A;  4I8O A;  3CWS A;  5HSH A;  1NVP A;  3ENC A;  2EIU A;  2Z0F A;  3D7Q A;  4WXA A;  1QN7 A;  1UT4 A;  1EBM A;  3TDH A;  1WJW A;  1UT7 A;  4WZS D;  1NH2 A;  2YH5 A;  1QN9 A;  2XHI A;  1QN4 A;  3EAY A;  4EAJ A;  1VTO A;  2NLV A;  3KRM A;  3CWU A;  2HL8 A;  3KTU A;  4HJH A;  4WX8 A;  2QR1 A;  2QLV A;  1QTS A;  3C04 A;  3OLP A;  4EJY A;  4EAK A;  3OCI A;  1DIZ A;  4EJZ A;  1QNC A;  3OH6 A;  1VOK A;  3H1Z A;  3HS9 A;  2NWV A;  1JDY A;  1KY7 A;  3CVS A;  3PDK A;  2HZM A;  1VTL E;  2MJ7 A;  5BMN A;  2I5W A;  3ENO C;  1PCM X;  4EAL A;  3DPT A;  3EIK A;  1HU0 A;  1RM1 A;  2D0B A;  3D4V A;  2QRD A;  3F10 A;  4Q11 A;  1PCJ X;  5KL0 A;  4ROE B;  4MRQ A;  1KY6 A;  2NOI A;  1LWV A;  1YQR A;  1QNB A;  2NOF A;  3F0Z A;  1LWW A;  1J3M A;  4EAI A;  1K2Y X;  1LWY A;  2QRC A;  3IH7 A;  1KFI A;  3T4N A;  2Y8Q A;  2DKD A;  1PZD A;  4TPS A;  1YQK A;  1XSZ A;  2DKA A;  5IYC P;  5F9C A;  3HS8 A;  1D3U A;  1K35 A;  2MZ8 A;  2D0C A;  1C9B B;  2HZS A;  2FKF A;  2PWW A;  1M5Q 1;  1W80 A;  2Y8L A;  3OH9 A;  2JPI A;  1P5G X;  1V5S A;  1NGM A;  1KFQ A;  1M3Q A;  2H4L X;  3PMG A;  2O3O A;  2FGT A;  3NA5 A;  2JOI A;  2V8Q A;  2YA3 A;  3TE5 A;  5JN5 A;  1T6A A;  2NOH A;  2EHP A;  1PVS A;  3OST A;  4QG5 A;  1VOL B;  1KYD A;  1QN3 A;  2NVM A;  3ASM A;  3UW2 A;  1UL7 A;  1R4X A;  3CW7 A;  1YQL A;  3N89 A;  2VJ0 A;  3I3W A; 
#chains in the Genus database with same CATH homology
 1K2Y X;  4IL8 A;  1KFI A;  2DKD A;  4HJH A;  4WX8 A;  1VKL A;  2DKA A;  3C04 A;  5BMP A;  4BJU A;  3OLP A;  1K35 A;  5F9C A;  5JMV D;  1LXT A;  3RSM A;  2FKF A;  2FKM X;  1C4G A;  2JPI A;  1P5G X;  1TUO A;  3BKQ X;  1JDY A;  1WQA A;  3PDK A;  5EPC A;  1KFQ A;  2H4L X;  3PMG A;  2DKC A;  3NA5 A;  1P5D X;  2H5A X;  3ENO C;  1PCM X;  5BMN A;  5JN5 A;  2EHP A;  1C47 A;  4QG5 A;  2FUV A;  5HSH A;  3ENC A;  5KL0 A;  1PCJ X;  2Z0F A;  4WXA A;  4MRQ A;  3UW2 A;  2EIU A;  1WJW A;  2F7L A;  3I3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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