1WQAA

Crystal structure of pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with mg2+
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
455
structure length
455
Chain Sequence
MGKLFGTFGVRGIANEKITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEELFFKEDFDRAKWYEIGEVRREDIIKPYIEAIKSKVDVEAIKKRKPFVVVDTSNGAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEPNEENLKEFMEIVKALGADFGVAQDGDADRAVFIDENGRFIQGDKTFALVADAVLKEKGGGLLVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAKSGKKFSELIDELPKYYQIKTKRHVEGDRHAIVNKVAEMARERGYTVDTTDGAKIIFEDGWVLVRASGTEPIIRIFSEAKSKEKAQEYLNLGIELLEKALS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords phospho-sugar mutase
publication title Crystal structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase
rcsb
source organism Pyrococcus horikoshii
total genus 165
structure length 455
sequence length 455
chains with identical sequence B, C, D
ec nomenclature ec 5.4.2.8: Phosphomannomutase.
pdb deposition date 2004-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1wqaA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1wqaA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1wqaA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1wqaA03
5HSHA 2F7LA 3UW2A 2JPIA 3RSMA 2EHPA 5JN5A 2EIUA 1C4GA 5BMPA 2DKDA 5F9CA 1JDYA 1KFIA 2FKFA 2DKCA 3ENCA 2FKMX 3C04A 1P5DX 2H4LX 5JMVD 2DKAA 2Z0FA 5BMNA 1K35A 2H5AX 5EPCA 1VKLA 1PCMX 3I3WA 1KFQA 3PDKA 1K2YX 3ENOC 4WX8A 1P5GX 1PCJX 3PMGA 3NA5A 4IL8A 1LXTA 4BJUA 1TUOA 3BKQX 1WQAA 3OLPA 4WXAA 4MRQA 4QG5A 1WJWA 4HJHA 2FUVA 5KL0A 1C47A
chains in the Genus database with same CATH superfamily
1NVPA 3OSMA 1HU0A 3UW2A 1V5SA 3F10A 3RSMA 2G30A 2YH5A 1UT4A 1C4GA 3TE5A 3ENCA 2O3OA 2ZFDB 1EBMA 3I0XA 2DKAA 5EPCA 3OGDA 1QNCA 3RPJA 1PCMX 2JHNA 1KFQA 2QREA 3PDKA 4DULA 2Y8LA 1RM1A 1LWVA 1K2YX 3ENOC 4WX8A 1QNBA 1VTOA 1E42A 2NOLA 2HL9A 2V8QA 1LXTA 2OOXA 1J3MA 3SNSA 1B9KA 1MP9A 2NOBA 1AISA 1QTPA 2NOHA 1VOKA 3KTUA 3EAYA 4EJYA 4D7QA 3CWAA 2EIUA 2VJ0A 4EAGA 5BMPA 1QNEA 2FGTA 1N3AA 3OH6A 1QN4A 1QN3A 4B0AA 2FKFA 1FN7A 3CWSA 1KYDA 2FKMX 4EALA 3F0ZA 3CW7A 1YTFA 2QLVA 3TDHA 3DPUA 2HL8A 3HS9A 2NOEA 2NLVA 2Z8UA 2Y8QA 4WZSD 1QN8A 1YQKA 5AN4A 2NOFA 3CVSA 1QN7A 3ASMA 2NOZA 1TBPA 4ROEB 4IL8A 1KYFA 4ROCB 1Q9UA 1UT7A 4BJUA 1TUOA 3N89A 3KRMA 1WQAA 4C7PA 4EAIA 3OLPA 1D3UA 4MRQA 3VN5A 2NOIA 1WJWA 3OC3C 4EAJA 5KL0A 1C47A 1W80A 2OOYA 2QRDA 1N39A 2HZMA 2JOIA 5HSHA 1R4XA 2EHPA 1NH2A 2YA3A 3H1ZA 2MZ8A 2I5WA 2MJ7A 2IV9A 3ULXA 3CWUA 1M3QA 3EIKA 3CVTA 3C04A 1TBAB 2D0BA 1CDWA 2PWWA 1KY7A 5IYDP 1K35A 1T6AA 2HKPA 1QTSA 1TGHA 5IYBP 2LAEA 3OSTA 3HS8A 1QNAA 1P5GX 1PCJX 3OSEA 2XHIA 1DIZA 3I0WA 3NA5A 4EJZA 3T4NA 4RODB 4D7RA 2V92A 1VTLE 3D4VA 2QR1A 3BKQX 1YQRA 1QN6A 2NWVA 2V9JA 4WXAA 4QG5A 4HJHA 1KY6A 1KYUA 2F7LA 2JPIA 5JN5A 5IYCP 1NGMA 1YTBA 2QRCA 2HZSA 1JFIC 2DKDA 2D0AA 1UL7A 5F9CA 1JDYA 1XSZA 1KFIA 1PCZA 3OH9A 2DKCA 2IV8A 2NVMA 4PY5A 1PZDA 1C9BB 1P5DX 3D7QA 2H4LX 5JMVD 2Z0FA 4CFFA 4I8OA 5BMNA 2D0CA 1YQLA 1M3HA 1KO9A 2H5AX 1VKLA 1QN9A 1EUVA 2EHBD 1MPGA 3I3WA 3DPTA 4EAKA 1LWWA 4TPSA 1PVSA 1M5Q1 3PMGA 1LWYA 3IH7A 1YQMA 1VOLB 2R5XA 2JHJA 4Q11A 1N3CA 2FUVA 3CWTA 3OCIA 1QN5A
chains in the Genus database with same CATH topology
5HSHA 2F7LA 3UW2A 2JPIA 3RSMA 2EHPA 5JN5A 2EIUA 1C4GA 5BMPA 2DKDA 5F9CA 1JDYA 1KFIA 2FKFA 2DKCA 3ENCA 2FKMX 3C04A 1P5DX 2H4LX 5JMVD 2DKAA 2Z0FA 5BMNA 1K35A 2H5AX 5EPCA 1VKLA 1PCMX 3I3WA 1KFQA 3PDKA 1K2YX 3ENOC 4WX8A 1P5GX 1PCJX 3PMGA 3NA5A 4IL8A 1LXTA 4BJUA 1TUOA 3BKQX 1WQAA 3OLPA 4WXAA 4MRQA 4QG5A 1WJWA 4HJHA 2FUVA 5KL0A 1C47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HSH A;  2F7L A;  3UW2 A;  2JPI A;  3RSM A;  2EHP A;  5JN5 A;  2EIU A;  1C4G A;  5BMP A;  2DKD A;  5F9C A;  1JDY A;  1KFI A;  2FKF A;  2DKC A;  3ENC A;  2FKM X;  3C04 A;  1P5D X;  2H4L X;  5JMV D;  2DKA A;  2Z0F A;  5BMN A;  1K35 A;  2H5A X;  5EPC A;  1VKL A;  1PCM X;  3I3W A;  1KFQ A;  3PDK A;  1K2Y X;  3ENO C;  4WX8 A;  1P5G X;  1PCJ X;  3PMG A;  3NA5 A;  4IL8 A;  1LXT A;  4BJU A;  1TUO A;  3BKQ X;  1WQA A;  3OLP A;  4WXA A;  4MRQ A;  4QG5 A;  1WJW A;  4HJH A;  2FUV A;  5KL0 A;  1C47 A; 
#chains in the Genus database with same CATH topology
 1NVP A;  3OSM A;  1HU0 A;  3UW2 A;  1V5S A;  3F10 A;  3RSM A;  2G30 A;  2YH5 A;  1UT4 A;  1C4G A;  3TE5 A;  3ENC A;  2O3O A;  2ZFD B;  1EBM A;  3I0X A;  2DKA A;  5EPC A;  3OGD A;  1QNC A;  3RPJ A;  1PCM X;  2JHN A;  1KFQ A;  2QRE A;  3PDK A;  4DUL A;  2Y8L A;  1RM1 A;  1LWV A;  1K2Y X;  3ENO C;  4WX8 A;  1QNB A;  1VTO A;  1E42 A;  2NOL A;  2HL9 A;  2V8Q A;  1LXT A;  2OOX A;  1J3M A;  3SNS A;  1B9K A;  1MP9 A;  2NOB A;  1AIS A;  1QTP A;  2NOH A;  1VOK A;  3KTU A;  3EAY A;  4EJY A;  4D7Q A;  3CWA A;  2EIU A;  2VJ0 A;  4EAG A;  5BMP A;  1QNE A;  2FGT A;  1N3A A;  3OH6 A;  1QN4 A;  1QN3 A;  4B0A A;  2FKF A;  1FN7 A;  3CWS A;  1KYD A;  2FKM X;  4EAL A;  3F0Z A;  3CW7 A;  1YTF A;  2QLV A;  3TDH A;  3DPU A;  2HL8 A;  3HS9 A;  2NOE A;  2NLV A;  2Z8U A;  2Y8Q A;  4WZS D;  1QN8 A;  1YQK A;  5AN4 A;  2NOF A;  3CVS A;  1QN7 A;  3ASM A;  2NOZ A;  1TBP A;  4ROE B;  4IL8 A;  1KYF A;  4ROC B;  1Q9U A;  1UT7 A;  4BJU A;  1TUO A;  3N89 A;  3KRM A;  1WQA A;  4C7P A;  4EAI A;  3OLP A;  1D3U A;  4MRQ A;  3VN5 A;  2NOI A;  1WJW A;  3OC3 C;  4EAJ A;  5KL0 A;  1C47 A;  1W80 A;  2OOY A;  2QRD A;  1N39 A;  2HZM A;  2JOI A;  5HSH A;  1R4X A;  2EHP A;  1NH2 A;  2YA3 A;  3H1Z A;  2MZ8 A;  2I5W A;  2MJ7 A;  2IV9 A;  3ULX A;  3CWU A;  1M3Q A;  3EIK A;  3CVT A;  3C04 A;  1TBA B;  2D0B A;  1CDW A;  2PWW A;  1KY7 A;  5IYD P;  1K35 A;  1T6A A;  2HKP A;  1QTS A;  1TGH A;  5IYB P;  2LAE A;  3OST A;  3HS8 A;  1QNA A;  1P5G X;  1PCJ X;  3OSE A;  2XHI A;  1DIZ A;  3I0W A;  3NA5 A;  4EJZ A;  3T4N A;  4ROD B;  4D7R A;  2V92 A;  1VTL E;  3D4V A;  2QR1 A;  3BKQ X;  1YQR A;  1QN6 A;  2NWV A;  2V9J A;  4WXA A;  4QG5 A;  4HJH A;  1KY6 A;  1KYU A;  2F7L A;  2JPI A;  5JN5 A;  5IYC P;  1NGM A;  1YTB A;  2QRC A;  2HZS A;  1JFI C;  2DKD A;  2D0A A;  1UL7 A;  5F9C A;  1JDY A;  1XSZ A;  1KFI A;  1PCZ A;  3OH9 A;  2DKC A;  2IV8 A;  2NVM A;  4PY5 A;  1PZD A;  1C9B B;  1P5D X;  3D7Q A;  2H4L X;  5JMV D;  2Z0F A;  4CFF A;  4I8O A;  5BMN A;  2D0C A;  1YQL A;  1M3H A;  1KO9 A;  2H5A X;  1VKL A;  1QN9 A;  1EUV A;  2EHB D;  1MPG A;  3I3W A;  3DPT A;  4EAK A;  1LWW A;  4TPS A;  1PVS A;  1M5Q 1;  3PMG A;  1LWY A;  3IH7 A;  1YQM A;  1VOL B;  2R5X A;  2JHJ A;  4Q11 A;  1N3C A;  2FUV A;  3CWT A;  3OCI A;  1QN5 A; 
#chains in the Genus database with same CATH homology
 5HSH A;  2F7L A;  3UW2 A;  2JPI A;  3RSM A;  2EHP A;  5JN5 A;  2EIU A;  1C4G A;  5BMP A;  2DKD A;  5F9C A;  1JDY A;  1KFI A;  2FKF A;  2DKC A;  3ENC A;  2FKM X;  3C04 A;  1P5D X;  2H4L X;  5JMV D;  2DKA A;  2Z0F A;  5BMN A;  1K35 A;  2H5A X;  5EPC A;  1VKL A;  1PCM X;  3I3W A;  1KFQ A;  3PDK A;  1K2Y X;  3ENO C;  4WX8 A;  1P5G X;  1PCJ X;  3PMG A;  3NA5 A;  4IL8 A;  1LXT A;  4BJU A;  1TUO A;  3BKQ X;  1WQA A;  3OLP A;  4WXA A;  4MRQ A;  4QG5 A;  1WJW A;  4HJH A;  2FUV A;  5KL0 A;  1C47 A; 
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similar chains in the Genus database (?% sequence similarity)
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