5BMNA

Crystal structure of apo form of phosphoglucomutase from xanthomonas citri
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
448
structure length
447
Chain Sequence
MTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLASPALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTAHNPMDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKTAYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHEPDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTGRFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCKSGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQSGRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTDGISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphoglucomutase
publication title Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
pubmed doi rcsb
source organism Xanthomonas axonopodis pv. citri (strain 306)
molecule tags Isomerase
total genus 157
structure length 447
sequence length 448
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2015-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 5bmnA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmnA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmnA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmnA02
2DKCA 2EIUA 3I3WA 1KFIA 3RSMA 4MRQA 2FUVA 1WQAA 3ENCA 3PDKA 2F7LA 5JMVD 2H4LX 1KFQA 1LXTA 5JN5A 1JDYA 3UW2A 3OLPA 4WXAA 1WJWA 2H5AX 3ENOC 1C4GA 1PCMX 3NA5A 1K35A 5F9CA 1VKLA 4WX8A 1K2YX 2FKFA 3BKQX 2JPIA 1P5GX 5BMPA 2Z0FA 2DKAA 1C47A 4QG5A 3C04A 5HSHA 2EHPA 2DKDA 1PCJX 5EPCA 5KL0A 4HJHA 2FKMX 1P5DX 3PMGA 1TUOA 5BMNA 4IL8A 4BJUA
chains in the Genus database with same CATH superfamily
2DKCA 2YH5A 2IV9A 2Z8UA 3I3WA 1YTFA 1LWWA 1XSZA 3RSMA 3ENCA 1WQAA 3RPJA 2F7LA 2IV8A 2H4LX 1LWYA 2OOXA 2R5XA 2O3OA 3T4NA 1NGMA 1VTLE 1DIZA 3TE5A 1JDYA 1UT7A 3I0WA 3ASMA 1UL7A 1N3AA 2Y8LA 3NA5A 1VKLA 3D4VA 1FN7A 1K2YX 3F10A 1PZDA 2FGTA 1TBAB 1P5GX 2NLVA 4EALA 1N39A 2Y8QA 2JHNA 2NOLA 1V5SA 3DPTA 1AISA 2DKDA 1PCJX 1RM1A 1QTPA 5KL0A 4EAGA 3PMGA 2ZFDB 1VOKA 4ROEB 1T6AA 1QNCA 2D0BA 4CFFA 3OH9A 3CWAA 2OOYA 3VN5A 1KO9A 2FUVA 4B0AA 3PDKA 2I5WA 2HKPA 1LXTA 3HS9A 2VJ0A 1MP9A 1QN8A 3KTUA 3SNSA 2QR1A 3UW2A 1QN6A 4EAIA 4DULA 2NVMA 1QN5A 3CWTA 5F9CA 2NOZA 4D7QA 2QRDA 2D0AA 2V9JA 3CVSA 4WX8A 2EHBD 1HU0A 1NVPA 2FKFA 2DKAA 2HL8A 1C47A 4QG5A 2QLVA 5HSHA 4EJYA 1TBPA 3N89A 1B9KA 2XHIA 2JOIA 4I8OA 2V92A 4EAJA 3D7QA 1QN7A 2FKMX 2HL9A 5IYCP 1R4XA 1KYFA 4WZSD 5AN4A 4ROCB 1KYUA 3IH7A 4BJUA 1Q9UA 4IL8A 1CDWA 4Q11A 1KFIA 1J3MA 2NOHA 2NOFA 3DPUA 4PY5A 1QNEA 1NH2A 1KFQA 3CVTA 5JN5A 3OSTA 2HZMA 1M3QA 1M3HA 1EUVA 5IYDP 2H5AX 1QN9A 1PCZA 1YQKA 3H1ZA 1C4GA 1PCMX 1UT4A 3F0ZA 4TPSA 1PVSA 2NOBA 2G30A 3I0XA 1QN3A 3BKQX 1D3UA 1W80A 3OGDA 2JPIA 5BMPA 1YQRA 2MZ8A 1YQMA 2EHPA 2PWWA 3EAYA 1QNAA 4HJHA 4EJZA 1P5DX 3TDHA 1QNBA 1JFIC 1C9BB 1M5Q1 5IYBP 2JHJA 4D7RA 1YQLA 2MJ7A 2EIUA 2V8QA 4MRQA 2NOIA 1YTBA 1KY6A 5JMVD 1VOLB 3OCIA 1N3CA 3EIKA 3OSMA 3OLPA 4WXAA 1WJWA 1VTOA 3ENOC 1LWVA 1EBMA 2HZSA 3CW7A 1K35A 2QRCA 1E42A 2QREA 2NOEA 2NWVA 3OH6A 4EAKA 1TGHA 1KYDA 2Z0FA 3ULXA 3CWUA 3C04A 4C7PA 1QTSA 2LAEA 1QN4A 2D0CA 5EPCA 1MPGA 3OSEA 3HS8A 2YA3A 1KY7A 4RODB 3KRMA 1TUOA 5BMNA 3OC3C 3CWSA
chains in the Genus database with same CATH topology
2DKCA 2EIUA 3I3WA 1KFIA 3RSMA 4MRQA 2FUVA 1WQAA 3ENCA 3PDKA 2F7LA 5JMVD 2H4LX 1KFQA 1LXTA 5JN5A 1JDYA 3UW2A 3OLPA 4WXAA 1WJWA 2H5AX 3ENOC 1C4GA 1PCMX 3NA5A 1K35A 5F9CA 1VKLA 4WX8A 1K2YX 2FKFA 3BKQX 2JPIA 1P5GX 5BMPA 2Z0FA 2DKAA 1C47A 4QG5A 3C04A 5HSHA 2EHPA 2DKDA 1PCJX 5EPCA 5KL0A 4HJHA 2FKMX 1P5DX 3PMGA 1TUOA 5BMNA 4IL8A 4BJUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DKC A;  2EIU A;  3I3W A;  1KFI A;  3RSM A;  4MRQ A;  2FUV A;  1WQA A;  3ENC A;  3PDK A;  2F7L A;  5JMV D;  2H4L X;  1KFQ A;  1LXT A;  5JN5 A;  1JDY A;  3UW2 A;  3OLP A;  4WXA A;  1WJW A;  2H5A X;  3ENO C;  1C4G A;  1PCM X;  3NA5 A;  1K35 A;  5F9C A;  1VKL A;  4WX8 A;  1K2Y X;  2FKF A;  3BKQ X;  2JPI A;  1P5G X;  5BMP A;  2Z0F A;  2DKA A;  1C47 A;  4QG5 A;  3C04 A;  5HSH A;  2EHP A;  2DKD A;  1PCJ X;  5EPC A;  5KL0 A;  4HJH A;  2FKM X;  1P5D X;  3PMG A;  1TUO A;  5BMN A;  4IL8 A;  4BJU A; 
#chains in the Genus database with same CATH topology
 2DKC A;  2YH5 A;  2IV9 A;  2Z8U A;  3I3W A;  1YTF A;  1LWW A;  1XSZ A;  3RSM A;  3ENC A;  1WQA A;  3RPJ A;  2F7L A;  2IV8 A;  2H4L X;  1LWY A;  2OOX A;  2R5X A;  2O3O A;  3T4N A;  1NGM A;  1VTL E;  1DIZ A;  3TE5 A;  1JDY A;  1UT7 A;  3I0W A;  3ASM A;  1UL7 A;  1N3A A;  2Y8L A;  3NA5 A;  1VKL A;  3D4V A;  1FN7 A;  1K2Y X;  3F10 A;  1PZD A;  2FGT A;  1TBA B;  1P5G X;  2NLV A;  4EAL A;  1N39 A;  2Y8Q A;  2JHN A;  2NOL A;  1V5S A;  3DPT A;  1AIS A;  2DKD A;  1PCJ X;  1RM1 A;  1QTP A;  5KL0 A;  4EAG A;  3PMG A;  2ZFD B;  1VOK A;  4ROE B;  1T6A A;  1QNC A;  2D0B A;  4CFF A;  3OH9 A;  3CWA A;  2OOY A;  3VN5 A;  1KO9 A;  2FUV A;  4B0A A;  3PDK A;  2I5W A;  2HKP A;  1LXT A;  3HS9 A;  2VJ0 A;  1MP9 A;  1QN8 A;  3KTU A;  3SNS A;  2QR1 A;  3UW2 A;  1QN6 A;  4EAI A;  4DUL A;  2NVM A;  1QN5 A;  3CWT A;  5F9C A;  2NOZ A;  4D7Q A;  2QRD A;  2D0A A;  2V9J A;  3CVS A;  4WX8 A;  2EHB D;  1HU0 A;  1NVP A;  2FKF A;  2DKA A;  2HL8 A;  1C47 A;  4QG5 A;  2QLV A;  5HSH A;  4EJY A;  1TBP A;  3N89 A;  1B9K A;  2XHI A;  2JOI A;  4I8O A;  2V92 A;  4EAJ A;  3D7Q A;  1QN7 A;  2FKM X;  2HL9 A;  5IYC P;  1R4X A;  1KYF A;  4WZS D;  5AN4 A;  4ROC B;  1KYU A;  3IH7 A;  4BJU A;  1Q9U A;  4IL8 A;  1CDW A;  4Q11 A;  1KFI A;  1J3M A;  2NOH A;  2NOF A;  3DPU A;  4PY5 A;  1QNE A;  1NH2 A;  1KFQ A;  3CVT A;  5JN5 A;  3OST A;  2HZM A;  1M3Q A;  1M3H A;  1EUV A;  5IYD P;  2H5A X;  1QN9 A;  1PCZ A;  1YQK A;  3H1Z A;  1C4G A;  1PCM X;  1UT4 A;  3F0Z A;  4TPS A;  1PVS A;  2NOB A;  2G30 A;  3I0X A;  1QN3 A;  3BKQ X;  1D3U A;  1W80 A;  3OGD A;  2JPI A;  5BMP A;  1YQR A;  2MZ8 A;  1YQM A;  2EHP A;  2PWW A;  3EAY A;  1QNA A;  4HJH A;  4EJZ A;  1P5D X;  3TDH A;  1QNB A;  1JFI C;  1C9B B;  1M5Q 1;  5IYB P;  2JHJ A;  4D7R A;  1YQL A;  2MJ7 A;  2EIU A;  2V8Q A;  4MRQ A;  2NOI A;  1YTB A;  1KY6 A;  5JMV D;  1VOL B;  3OCI A;  1N3C A;  3EIK A;  3OSM A;  3OLP A;  4WXA A;  1WJW A;  1VTO A;  3ENO C;  1LWV A;  1EBM A;  2HZS A;  3CW7 A;  1K35 A;  2QRC A;  1E42 A;  2QRE A;  2NOE A;  2NWV A;  3OH6 A;  4EAK A;  1TGH A;  1KYD A;  2Z0F A;  3ULX A;  3CWU A;  3C04 A;  4C7P A;  1QTS A;  2LAE A;  1QN4 A;  2D0C A;  5EPC A;  1MPG A;  3OSE A;  3HS8 A;  2YA3 A;  1KY7 A;  4ROD B;  3KRM A;  1TUO A;  5BMN A;  3OC3 C;  3CWS A; 
#chains in the Genus database with same CATH homology
 2DKC A;  2EIU A;  3I3W A;  1KFI A;  3RSM A;  4MRQ A;  2FUV A;  1WQA A;  3ENC A;  3PDK A;  2F7L A;  5JMV D;  2H4L X;  1KFQ A;  1LXT A;  5JN5 A;  1JDY A;  3UW2 A;  3OLP A;  4WXA A;  1WJW A;  2H5A X;  3ENO C;  1C4G A;  1PCM X;  3NA5 A;  1K35 A;  5F9C A;  1VKL A;  4WX8 A;  1K2Y X;  2FKF A;  3BKQ X;  2JPI A;  1P5G X;  5BMP A;  2Z0F A;  2DKA A;  1C47 A;  4QG5 A;  3C04 A;  5HSH A;  2EHP A;  2DKD A;  1PCJ X;  5EPC A;  5KL0 A;  4HJH A;  2FKM X;  1P5D X;  3PMG A;  1TUO A;  5BMN A;  4IL8 A;  4BJU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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