5BMNA

Crystal structure of apo form of phosphoglucomutase from xanthomonas citri
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
448
structure length
447
Chain Sequence
MTLPAFKAYDIRGRVPDELNEDLARRIGVALAAQLDQGPVVLGHDVRLASPALQEALSAGLRASGRDVIDIGLCGTEEVYFQTDYLKAAGGVMVTAHNPMDYNGMKLVREQARPISSDTGLFAIRDTVAADTAAPGEPTASEQSRTDKTAYLEHLLSYVDRSTLKPLKLVVNAGNGGAGLIVDLLAPHLPFEFVRVFHEPDGNFPNGIPNPLLPENRDATAKAVKDNGADFGIAWDGDFDRCFFFDHTGRFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEQVEEAGGIPVLCKSGHAFIKEKMRSENAVYGGEMSAHHYFREFAYADSGMIPWLLIAELVSQSGRSLADLVEARMQKFPCSGEINFKVADAKASVARVMEHYASLSPELDYTDGISADFGQWRFNLRSSNTEPLLRLNVETRGDAALLETRTQEISNLLRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Phosphoglucomutase
publication title Structural and functional characterization of the phosphoglucomutase from Xanthomonas citri subsp. citri.
pubmed doi rcsb
source organism Xanthomonas axonopodis pv. citri (strain 306)
total genus 157
structure length 447
sequence length 448
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2015-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 5bmnA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmnA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmnA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 5bmnA02
5JMVD 2H5AX 5F9CA 1K2YX 5EPCA 1JDYA 1TUOA 4HJHA 4BJUA 5HSHA 5JN5A 2F7LA 2JPIA 1PCJX 5BMPA 1LXTA 5BMNA 2FKFA 3ENCA 3NA5A 3PDKA 4WX8A 1C47A 1KFQA 1P5GX 2DKCA 1K35A 1KFIA 1C4GA 2FKMX 4MRQA 3RSMA 2DKAA 4IL8A 3UW2A 2EHPA 1VKLA 3PMGA 2EIUA 2DKDA 3C04A 2Z0FA 1WQAA 3BKQX 2H4LX 4WXAA 5KL0A 1P5DX 3ENOC 4QG5A 3OLPA 2FUVA 1WJWA 1PCMX 3I3WA
chains in the Genus database with same CATH superfamily
4RODB 5EPCA 5HSHA 1TUOA 1RM1A 2QR1A 3KRMA 2F7LA 1HU0A 2NOEA 2D0CA 1MP9A 5BMNA 2PWWA 2FKFA 2QLVA 1YQLA 3NA5A 3PDKA 1VTOA 1KYDA 1UT7A 3N89A 1YTFA 4MRQA 2EIUA 4IL8A 3CVTA 2NLVA 2YH5A 3VN5A 3KTUA 1KYUA 2Z0FA 1YQMA 2H4LX 2FGTA 1EBMA 5KL0A 1P5DX 4PY5A 3EIKA 2XHIA 3EAYA 3F10A 1JFIC 1YQRA 1WJWA 4I8OA 3I3WA 1UL7A 1FN7A 2H5AX 5F9CA 5AN4A 3CWUA 1JDYA 1XSZA 4D7RA 3ULXA 1M3HA 3SNSA 1DIZA 2V92A 2JPIA 1PCJX 5BMPA 1LXTA 1PVSA 2HZMA 1TBPA 1M3QA 2NVMA 1QN5A 4ROCB 1QN6A 1VTLE 2OOYA 1VOLB 3OGDA 1C47A 1LWWA 3OH9A 1N3AA 1K35A 1V5SA 3RSMA 1KY6A 2JHJA 2DKAA 1CDWA 4ROEB 2HKPA 2V9JA 3PMGA 3I0WA 1QN7A 3D7QA 1WQAA 3OSTA 1TBAB 2YA3A 5IYBP 1QTPA 3HS9A 4C7PA 3CW7A 1NVPA 3CWSA 5IYDP 3ENOC 4QG5A 3F0ZA 5IYCP 1VOKA 2Z8UA 3OLPA 3OH6A 4TPSA 2IV9A 1PCMX 1KY7A 2Y8LA 2NOIA 2NOHA 1K2YX 5JN5A 2HZSA 2Y8QA 2MZ8A 3H1ZA 1PCZA 2IV8A 1QN3A 3ENCA 3HS8A 1KO9A 1YTBA 2I5WA 2NOFA 1LWVA 3CWTA 2QREA 4WX8A 1QN4A 1KFQA 2OOXA 2D0AA 2DKCA 1NGMA 1NH2A 2FKMX 2NOLA 2EHPA 2D0BA 4B0AA 1N3CA 3I0XA 2O3OA 2LAEA 2DKDA 4DULA 4EAIA 2EHBD 4EJYA 3C04A 3CVSA 3OSEA 4WXAA 1UT4A 2QRDA 3OSMA 2JHNA 1D3UA 3D4VA 4D7QA 1N39A 3T4NA 4EAJA 1Q9UA 2V8QA 1MPGA 4EAKA 2MJ7A 1C9BB 3IH7A 1QNBA 2HL9A 1QNEA 1LWYA 1R4XA 5JMVD 1YQKA 4BJUA 4HJHA 1M5Q1 1AISA 1QN9A 1E42A 2NOZA 4EJZA 3TDHA 1EUVA 3RPJA 1J3MA 1KYFA 3CWAA 2NOBA 2VJ0A 1P5GX 4EAGA 4Q11A 1QNAA 1KFIA 1C4GA 1W80A 1PZDA 3TE5A 3UW2A 1QTSA 2G30A 1QNCA 1VKLA 2HL8A 3OCIA 1TGHA 3OC3C 1B9KA 4CFFA 3BKQX 3ASMA 4EALA 2R5XA 2JOIA 2ZFDB 1QN8A 2NWVA 2QRCA 1T6AA 2FUVA 4WZSD 3DPUA 3DPTA
chains in the Genus database with same CATH topology
5JMVD 2H5AX 5F9CA 1K2YX 5EPCA 1JDYA 1TUOA 4HJHA 4BJUA 5HSHA 5JN5A 2F7LA 2JPIA 1PCJX 5BMPA 1LXTA 5BMNA 2FKFA 3ENCA 3NA5A 3PDKA 4WX8A 1C47A 1KFQA 1P5GX 2DKCA 1K35A 1KFIA 1C4GA 2FKMX 4MRQA 3RSMA 2DKAA 4IL8A 3UW2A 2EHPA 1VKLA 3PMGA 2EIUA 2DKDA 3C04A 2Z0FA 1WQAA 3BKQX 2H4LX 4WXAA 5KL0A 1P5DX 3ENOC 4QG5A 3OLPA 2FUVA 1WJWA 1PCMX 3I3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JMV D;  2H5A X;  5F9C A;  1K2Y X;  5EPC A;  1JDY A;  1TUO A;  4HJH A;  4BJU A;  5HSH A;  5JN5 A;  2F7L A;  2JPI A;  1PCJ X;  5BMP A;  1LXT A;  5BMN A;  2FKF A;  3ENC A;  3NA5 A;  3PDK A;  4WX8 A;  1C47 A;  1KFQ A;  1P5G X;  2DKC A;  1K35 A;  1KFI A;  1C4G A;  2FKM X;  4MRQ A;  3RSM A;  2DKA A;  4IL8 A;  3UW2 A;  2EHP A;  1VKL A;  3PMG A;  2EIU A;  2DKD A;  3C04 A;  2Z0F A;  1WQA A;  3BKQ X;  2H4L X;  4WXA A;  5KL0 A;  1P5D X;  3ENO C;  4QG5 A;  3OLP A;  2FUV A;  1WJW A;  1PCM X;  3I3W A; 
#chains in the Genus database with same CATH topology
 4ROD B;  5EPC A;  5HSH A;  1TUO A;  1RM1 A;  2QR1 A;  3KRM A;  2F7L A;  1HU0 A;  2NOE A;  2D0C A;  1MP9 A;  5BMN A;  2PWW A;  2FKF A;  2QLV A;  1YQL A;  3NA5 A;  3PDK A;  1VTO A;  1KYD A;  1UT7 A;  3N89 A;  1YTF A;  4MRQ A;  2EIU A;  4IL8 A;  3CVT A;  2NLV A;  2YH5 A;  3VN5 A;  3KTU A;  1KYU A;  2Z0F A;  1YQM A;  2H4L X;  2FGT A;  1EBM A;  5KL0 A;  1P5D X;  4PY5 A;  3EIK A;  2XHI A;  3EAY A;  3F10 A;  1JFI C;  1YQR A;  1WJW A;  4I8O A;  3I3W A;  1UL7 A;  1FN7 A;  2H5A X;  5F9C A;  5AN4 A;  3CWU A;  1JDY A;  1XSZ A;  4D7R A;  3ULX A;  1M3H A;  3SNS A;  1DIZ A;  2V92 A;  2JPI A;  1PCJ X;  5BMP A;  1LXT A;  1PVS A;  2HZM A;  1TBP A;  1M3Q A;  2NVM A;  1QN5 A;  4ROC B;  1QN6 A;  1VTL E;  2OOY A;  1VOL B;  3OGD A;  1C47 A;  1LWW A;  3OH9 A;  1N3A A;  1K35 A;  1V5S A;  3RSM A;  1KY6 A;  2JHJ A;  2DKA A;  1CDW A;  4ROE B;  2HKP A;  2V9J A;  3PMG A;  3I0W A;  1QN7 A;  3D7Q A;  1WQA A;  3OST A;  1TBA B;  2YA3 A;  5IYB P;  1QTP A;  3HS9 A;  4C7P A;  3CW7 A;  1NVP A;  3CWS A;  5IYD P;  3ENO C;  4QG5 A;  3F0Z A;  5IYC P;  1VOK A;  2Z8U A;  3OLP A;  3OH6 A;  4TPS A;  2IV9 A;  1PCM X;  1KY7 A;  2Y8L A;  2NOI A;  2NOH A;  1K2Y X;  5JN5 A;  2HZS A;  2Y8Q A;  2MZ8 A;  3H1Z A;  1PCZ A;  2IV8 A;  1QN3 A;  3ENC A;  3HS8 A;  1KO9 A;  1YTB A;  2I5W A;  2NOF A;  1LWV A;  3CWT A;  2QRE A;  4WX8 A;  1QN4 A;  1KFQ A;  2OOX A;  2D0A A;  2DKC A;  1NGM A;  1NH2 A;  2FKM X;  2NOL A;  2EHP A;  2D0B A;  4B0A A;  1N3C A;  3I0X A;  2O3O A;  2LAE A;  2DKD A;  4DUL A;  4EAI A;  2EHB D;  4EJY A;  3C04 A;  3CVS A;  3OSE A;  4WXA A;  1UT4 A;  2QRD A;  3OSM A;  2JHN A;  1D3U A;  3D4V A;  4D7Q A;  1N39 A;  3T4N A;  4EAJ A;  1Q9U A;  2V8Q A;  1MPG A;  4EAK A;  2MJ7 A;  1C9B B;  3IH7 A;  1QNB A;  2HL9 A;  1QNE A;  1LWY A;  1R4X A;  5JMV D;  1YQK A;  4BJU A;  4HJH A;  1M5Q 1;  1AIS A;  1QN9 A;  1E42 A;  2NOZ A;  4EJZ A;  3TDH A;  1EUV A;  3RPJ A;  1J3M A;  1KYF A;  3CWA A;  2NOB A;  2VJ0 A;  1P5G X;  4EAG A;  4Q11 A;  1QNA A;  1KFI A;  1C4G A;  1W80 A;  1PZD A;  3TE5 A;  3UW2 A;  1QTS A;  2G30 A;  1QNC A;  1VKL A;  2HL8 A;  3OCI A;  1TGH A;  3OC3 C;  1B9K A;  4CFF A;  3BKQ X;  3ASM A;  4EAL A;  2R5X A;  2JOI A;  2ZFD B;  1QN8 A;  2NWV A;  2QRC A;  1T6A A;  2FUV A;  4WZS D;  3DPU A;  3DPT A; 
#chains in the Genus database with same CATH homology
 5JMV D;  2H5A X;  5F9C A;  1K2Y X;  5EPC A;  1JDY A;  1TUO A;  4HJH A;  4BJU A;  5HSH A;  5JN5 A;  2F7L A;  2JPI A;  1PCJ X;  5BMP A;  1LXT A;  5BMN A;  2FKF A;  3ENC A;  3NA5 A;  3PDK A;  4WX8 A;  1C47 A;  1KFQ A;  1P5G X;  2DKC A;  1K35 A;  1KFI A;  1C4G A;  2FKM X;  4MRQ A;  3RSM A;  2DKA A;  4IL8 A;  3UW2 A;  2EHP A;  1VKL A;  3PMG A;  2EIU A;  2DKD A;  3C04 A;  2Z0F A;  1WQA A;  3BKQ X;  2H4L X;  4WXA A;  5KL0 A;  1P5D X;  3ENO C;  4QG5 A;  3OLP A;  2FUV A;  1WJW A;  1PCM X;  3I3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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