1C47A

Binding driven structural changes in crystaline phosphoglucomutase associated with chemical reaction
Total Genus 191
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
561
structure length
561
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE PHOSPHOTRANSFERASE
publication title Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction
rcsb
total genus 191
structure length 561
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1999-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1c47A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1c47A02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1c47A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1c47A01
4WXAA 5JMVD 2H4LX 1WQAA 3PMGA 4WX8A 1K2YX 2JPIA 3I3WA 1TUOA 5JN5A 5EPCA 1P5GX 1VKLA 1C4GA 2DKAA 4MRQA 3BKQX 3NA5A 4HJHA 5KL0A 2FKFA 5BMNA 3RSMA 5HSHA 1WJWA 1LXTA 1KFIA 4IL8A 2DKCA 3ENOC 4QG5A 2EIUA 2DKDA 2EHPA 5BMPA 5F9CA 2FUVA 2F7LA 3PDKA 1C47A 3C04A 1K35A 1KFQA 2FKMX 2Z0FA 2H5AX 4BJUA 1JDYA 1PCJX 3OLPA 3ENCA 1P5DX 3UW2A 1PCMX
chains in the Genus database with same CATH superfamily
2R5XA 3EAYA 1KYFA 2NOLA 5JMVD 4B0AA 1EUVA 2JOIA 1LWVA 4WX8A 1NGMA 3I3WA 2NOZA 2ZFDB 3N89A 1TUOA 3D7QA 5JN5A 3I0XA 1NVPA 1N3AA 1YTBA 4MRQA 1C4GA 3SNSA 4ROEB 3HS8A 3CWAA 1M3HA 2D0BA 2NLVA 5BMNA 1D3UA 5HSHA 3CW7A 2HL9A 3OSMA 4IL8A 1QN7A 2IV9A 1QN6A 2NOHA 2I5WA 2V9JA 4QG5A 2EHPA 3D4VA 1NH2A 2D0AA 3I0WA 2QREA 2Y8QA 1QNEA 2OOYA 2FUVA 1J3MA 3PDKA 4EAKA 1VTLE 1QN3A 1TBAB 2Z0FA 2IV8A 1JDYA 3OLPA 2OOXA 3UW2A 4Q11A 4I8OA 1QTPA 1UT7A 1Q9UA 1WQAA 3PMGA 3CVTA 2NWVA 1UL7A 1M5Q1 1E42A 1K2YX 1T6AA 2JPIA 4ROCB 1V5SA 2YA3A 1QN5A 5AN4A 5IYCP 4PY5A 1PVSA 3CWTA 1P5GX 2O3OA 1YTFA 2DKAA 3T4NA 2G30A 1PCZA 5KL0A 2HKPA 3H1ZA 3RSMA 1AISA 3CWUA 1QTSA 1TBPA 3OGDA 2EIUA 2DKDA 1YQRA 5BMPA 1KO9A 2F7LA 3KTUA 2LAEA 1YQKA 4WZSD 4CFFA 2PWWA 3DPUA 1JFIC 1YQLA 4C7PA 3ENCA 1QN9A 4RODB 2QR1A 1PCMX 3VN5A 2H4LX 1LWWA 1VOLB 2Z8UA 4DULA 1EBMA 1N3CA 4EAIA 2NOEA 2Y8LA 3TDHA 1FN7A 4TPSA 3TE5A 3BKQX 4HJHA 1N39A 1QN4A 2QLVA 2FKFA 1YQMA 1MP9A 3KRMA 1TGHA 1QNBA 5IYBP 2MZ8A 2NVMA 1B9KA 2YH5A 1KY7A 1QNAA 3OCIA 1MPGA 3OH6A 2NOBA 3CVSA 1QN8A 4EALA 5F9CA 3RPJA 3C04A 1RM1A 2NOFA 1KFQA 4D7RA 1PZDA 2NOIA 4BJUA 1CDWA 2EHBD 4EAGA 1P5DX 1VTOA 3F10A 4WXAA 1R4XA 2MJ7A 4D7QA 2QRDA 3OH9A 1LWYA 2V92A 3DPTA 1UT4A 4EJYA 3OSTA 3IH7A 1HU0A 1XSZA 3CWSA 2XHIA 1W80A 2JHNA 1C9BB 1KYUA 5EPCA 2FGTA 2HZSA 2JHJA 1KYDA 1VKLA 2HL8A 2D0CA 1QNCA 1WJWA 1VOKA 3OC3C 1LXTA 1KY6A 4EJZA 2DKCA 3ENOC 3ASMA 2VJ0A 1DIZA 3OSEA 5IYDP 3F0ZA 1C47A 2QRCA 1K35A 2FKMX 2V8QA 3EIKA 2H5AX 3HS9A 1M3QA 1PCJX 3NA5A 2HZMA 4EAJA 1KFIA 3ULXA
chains in the Genus database with same CATH topology
4WXAA 5JMVD 2H4LX 1WQAA 3PMGA 4WX8A 1K2YX 2JPIA 3I3WA 1TUOA 5JN5A 5EPCA 1P5GX 1VKLA 1C4GA 2DKAA 4MRQA 3BKQX 3NA5A 4HJHA 5KL0A 2FKFA 5BMNA 3RSMA 5HSHA 1WJWA 1LXTA 1KFIA 4IL8A 2DKCA 3ENOC 4QG5A 2EIUA 2DKDA 2EHPA 5BMPA 5F9CA 2FUVA 2F7LA 3PDKA 1C47A 3C04A 1K35A 1KFQA 2FKMX 2Z0FA 2H5AX 4BJUA 1JDYA 1PCJX 3OLPA 3ENCA 1P5DX 3UW2A 1PCMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WXA A;  5JMV D;  2H4L X;  1WQA A;  3PMG A;  4WX8 A;  1K2Y X;  2JPI A;  3I3W A;  1TUO A;  5JN5 A;  5EPC A;  1P5G X;  1VKL A;  1C4G A;  2DKA A;  4MRQ A;  3BKQ X;  3NA5 A;  4HJH A;  5KL0 A;  2FKF A;  5BMN A;  3RSM A;  5HSH A;  1WJW A;  1LXT A;  1KFI A;  4IL8 A;  2DKC A;  3ENO C;  4QG5 A;  2EIU A;  2DKD A;  2EHP A;  5BMP A;  5F9C A;  2FUV A;  2F7L A;  3PDK A;  1C47 A;  3C04 A;  1K35 A;  1KFQ A;  2FKM X;  2Z0F A;  2H5A X;  4BJU A;  1JDY A;  1PCJ X;  3OLP A;  3ENC A;  1P5D X;  3UW2 A;  1PCM X; 
#chains in the Genus database with same CATH topology
 2R5X A;  3EAY A;  1KYF A;  2NOL A;  5JMV D;  4B0A A;  1EUV A;  2JOI A;  1LWV A;  4WX8 A;  1NGM A;  3I3W A;  2NOZ A;  2ZFD B;  3N89 A;  1TUO A;  3D7Q A;  5JN5 A;  3I0X A;  1NVP A;  1N3A A;  1YTB A;  4MRQ A;  1C4G A;  3SNS A;  4ROE B;  3HS8 A;  3CWA A;  1M3H A;  2D0B A;  2NLV A;  5BMN A;  1D3U A;  5HSH A;  3CW7 A;  2HL9 A;  3OSM A;  4IL8 A;  1QN7 A;  2IV9 A;  1QN6 A;  2NOH A;  2I5W A;  2V9J A;  4QG5 A;  2EHP A;  3D4V A;  1NH2 A;  2D0A A;  3I0W A;  2QRE A;  2Y8Q A;  1QNE A;  2OOY A;  2FUV A;  1J3M A;  3PDK A;  4EAK A;  1VTL E;  1QN3 A;  1TBA B;  2Z0F A;  2IV8 A;  1JDY A;  3OLP A;  2OOX A;  3UW2 A;  4Q11 A;  4I8O A;  1QTP A;  1UT7 A;  1Q9U A;  1WQA A;  3PMG A;  3CVT A;  2NWV A;  1UL7 A;  1M5Q 1;  1E42 A;  1K2Y X;  1T6A A;  2JPI A;  4ROC B;  1V5S A;  2YA3 A;  1QN5 A;  5AN4 A;  5IYC P;  4PY5 A;  1PVS A;  3CWT A;  1P5G X;  2O3O A;  1YTF A;  2DKA A;  3T4N A;  2G30 A;  1PCZ A;  5KL0 A;  2HKP A;  3H1Z A;  3RSM A;  1AIS A;  3CWU A;  1QTS A;  1TBP A;  3OGD A;  2EIU A;  2DKD A;  1YQR A;  5BMP A;  1KO9 A;  2F7L A;  3KTU A;  2LAE A;  1YQK A;  4WZS D;  4CFF A;  2PWW A;  3DPU A;  1JFI C;  1YQL A;  4C7P A;  3ENC A;  1QN9 A;  4ROD B;  2QR1 A;  1PCM X;  3VN5 A;  2H4L X;  1LWW A;  1VOL B;  2Z8U A;  4DUL A;  1EBM A;  1N3C A;  4EAI A;  2NOE A;  2Y8L A;  3TDH A;  1FN7 A;  4TPS A;  3TE5 A;  3BKQ X;  4HJH A;  1N39 A;  1QN4 A;  2QLV A;  2FKF A;  1YQM A;  1MP9 A;  3KRM A;  1TGH A;  1QNB A;  5IYB P;  2MZ8 A;  2NVM A;  1B9K A;  2YH5 A;  1KY7 A;  1QNA A;  3OCI A;  1MPG A;  3OH6 A;  2NOB A;  3CVS A;  1QN8 A;  4EAL A;  5F9C A;  3RPJ A;  3C04 A;  1RM1 A;  2NOF A;  1KFQ A;  4D7R A;  1PZD A;  2NOI A;  4BJU A;  1CDW A;  2EHB D;  4EAG A;  1P5D X;  1VTO A;  3F10 A;  4WXA A;  1R4X A;  2MJ7 A;  4D7Q A;  2QRD A;  3OH9 A;  1LWY A;  2V92 A;  3DPT A;  1UT4 A;  4EJY A;  3OST A;  3IH7 A;  1HU0 A;  1XSZ A;  3CWS A;  2XHI A;  1W80 A;  2JHN A;  1C9B B;  1KYU A;  5EPC A;  2FGT A;  2HZS A;  2JHJ A;  1KYD A;  1VKL A;  2HL8 A;  2D0C A;  1QNC A;  1WJW A;  1VOK A;  3OC3 C;  1LXT A;  1KY6 A;  4EJZ A;  2DKC A;  3ENO C;  3ASM A;  2VJ0 A;  1DIZ A;  3OSE A;  5IYD P;  3F0Z A;  1C47 A;  2QRC A;  1K35 A;  2FKM X;  2V8Q A;  3EIK A;  2H5A X;  3HS9 A;  1M3Q A;  1PCJ X;  3NA5 A;  2HZM A;  4EAJ A;  1KFI A;  3ULX A; 
#chains in the Genus database with same CATH homology
 4WXA A;  5JMV D;  2H4L X;  1WQA A;  3PMG A;  4WX8 A;  1K2Y X;  2JPI A;  3I3W A;  1TUO A;  5JN5 A;  5EPC A;  1P5G X;  1VKL A;  1C4G A;  2DKA A;  4MRQ A;  3BKQ X;  3NA5 A;  4HJH A;  5KL0 A;  2FKF A;  5BMN A;  3RSM A;  5HSH A;  1WJW A;  1LXT A;  1KFI A;  4IL8 A;  2DKC A;  3ENO C;  4QG5 A;  2EIU A;  2DKD A;  2EHP A;  5BMP A;  5F9C A;  2FUV A;  2F7L A;  3PDK A;  1C47 A;  3C04 A;  1K35 A;  1KFQ A;  2FKM X;  2Z0F A;  2H5A X;  4BJU A;  1JDY A;  1PCJ X;  3OLP A;  3ENC A;  1P5D X;  3UW2 A;  1PCM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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