1K2YX

Crystal structure of phosphomannomutase/phosphoglucomutase s108a mutant from p. aeruginosa
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
459
structure length
459
Chain Sequence
KAPTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGAHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords phosphomannomutase
publication title Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 163
structure length 459
sequence length 459
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2001-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1k2yX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1k2yX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1k2yX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1k2yX02
3PDKA 1VKLA 1P5DX 5BMPA 1C4GA 1PCJX 4WX8A 3OLPA 2EIUA 5HSHA 3I3WA 1K2YX 1WJWA 1WQAA 3BKQX 3C04A 1P5GX 5F9CA 3RSMA 3UW2A 1JDYA 4HJHA 2H4LX 2FUVA 2DKAA 4QG5A 5JMVD 1LXTA 2JPIA 1K35A 5EPCA 3ENCA 2DKCA 1KFQA 1KFIA 2F7LA 2Z0FA 1TUOA 2FKMX 2H5AX 3ENOC 3NA5A 3PMGA 4MRQA 5KL0A 1PCMX 5BMNA 5JN5A 2EHPA 4WXAA 4BJUA 2FKFA 4IL8A 2DKDA 1C47A
chains in the Genus database with same CATH superfamily
1QNAA 1UT4A 2QREA 3PDKA 3D4VA 3OH6A 1C4GA 1EUVA 3OLPA 2R5XA 5HSHA 5IYBP 1K2YX 2QR1A 3C04A 3OC3C 3RSMA 3CWTA 3T4NA 1JFIC 1NVPA 2G30A 4ROEB 4HJHA 1YQMA 2Z8UA 2VJ0A 3N89A 4TPSA 2JPIA 3ENCA 1RM1A 1QN5A 5IYCP 3OSTA 3CWAA 2JOIA 2Z0FA 1TUOA 1W80A 2D0AA 2QLVA 3VN5A 3CVTA 5KL0A 4EJZA 3OSMA 3CWUA 3KTUA 5IYDP 1TGHA 2NOEA 1LWVA 2YA3A 1KY7A 1QN3A 3CW7A 2PWWA 4EAIA 4I8OA 1UL7A 4EJYA 2JHJA 1N39A 1Q9UA 2Y8LA 3DPTA 3ASMA 2NOFA 4DULA 1PZDA 1VTLE 3I3WA 2EIUA 1WJWA 2D0BA 2HZMA 3OSEA 3SNSA 1M5Q1 1QN6A 2NVMA 2NOIA 1VOLB 4B0AA 3D7QA 1QN4A 2IV9A 2NOZA 1T6AA 2FUVA 1V5SA 2V92A 1YQLA 1C9BB 4QG5A 2NLVA 1KO9A 1LXTA 2DKCA 1MP9A 1KFQA 1YTFA 3F10A 4D7RA 3HS9A 2HL9A 2QRDA 3H1ZA 4D7QA 1KY6A 2H5AX 3PMGA 5BMNA 3OGDA 1TBAB 2EHPA 3TDHA 4BJUA 1QNBA 4IL8A 1TBPA 2QRCA 1NH2A 3EAYA 2NWVA 1VKLA 1P5DX 1YQRA 2NOBA 5BMPA 2OOYA 3CVSA 2V8QA 3OH9A 2XHIA 1WQAA 3BKQX 2NOLA 5F9CA 4C7PA 3RPJA 3TE5A 2V9JA 1D3UA 1VOKA 3UW2A 1N3AA 1DIZA 3CWSA 1KYDA 1JDYA 1E42A 2H4LX 1QN9A 1UT7A 2O3OA 3OCIA 2MJ7A 1QNCA 5JMVD 1K35A 5EPCA 3EIKA 2IV8A 2F7LA 1LWWA 2OOXA 3KRMA 5JN5A 2I5WA 1M3QA 4EAGA 4MRQA 1YTBA 2NOHA 4WXAA 2FKFA 1R4XA 1PVSA 2MZ8A 1M3HA 1AISA 3F0ZA 1KYFA 4EAKA 1NGMA 1LWYA 2ZFDB 1PCJX 4WX8A 1QNEA 2EHBD 2LAEA 1XSZA 4WZSD 1PCZA 1EBMA 1P5GX 1QTSA 2Y8QA 2HKPA 1QN8A 4ROCB 1J3MA 1FN7A 4EALA 1YQKA 2DKAA 4CFFA 4RODB 3IH7A 1N3CA 1KYUA 5AN4A 3DPUA 1QTPA 1VTOA 1HU0A 2D0CA 3ULXA 1KFIA 1B9KA 2HL8A 2YH5A 2FKMX 3I0XA 3ENOC 4PY5A 3NA5A 2FGTA 3I0WA 1PCMX 2HZSA 3HS8A 2JHNA 1QN7A 4Q11A 4EAJA 1CDWA 1MPGA 2DKDA 1C47A
chains in the Genus database with same CATH topology
3PDKA 1VKLA 1P5DX 5BMPA 1C4GA 1PCJX 4WX8A 3OLPA 2EIUA 5HSHA 3I3WA 1K2YX 1WJWA 1WQAA 3BKQX 3C04A 1P5GX 5F9CA 3RSMA 3UW2A 1JDYA 4HJHA 2H4LX 2FUVA 2DKAA 4QG5A 5JMVD 1LXTA 2JPIA 1K35A 5EPCA 3ENCA 2DKCA 1KFQA 1KFIA 2F7LA 2Z0FA 1TUOA 2FKMX 2H5AX 3ENOC 3NA5A 3PMGA 4MRQA 5KL0A 1PCMX 5BMNA 5JN5A 2EHPA 4WXAA 4BJUA 2FKFA 4IL8A 2DKDA 1C47A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PDK A;  1VKL A;  1P5D X;  5BMP A;  1C4G A;  1PCJ X;  4WX8 A;  3OLP A;  2EIU A;  5HSH A;  3I3W A;  1K2Y X;  1WJW A;  1WQA A;  3BKQ X;  3C04 A;  1P5G X;  5F9C A;  3RSM A;  3UW2 A;  1JDY A;  4HJH A;  2H4L X;  2FUV A;  2DKA A;  4QG5 A;  5JMV D;  1LXT A;  2JPI A;  1K35 A;  5EPC A;  3ENC A;  2DKC A;  1KFQ A;  1KFI A;  2F7L A;  2Z0F A;  1TUO A;  2FKM X;  2H5A X;  3ENO C;  3NA5 A;  3PMG A;  4MRQ A;  5KL0 A;  1PCM X;  5BMN A;  5JN5 A;  2EHP A;  4WXA A;  4BJU A;  2FKF A;  4IL8 A;  2DKD A;  1C47 A; 
#chains in the Genus database with same CATH topology
 1QNA A;  1UT4 A;  2QRE A;  3PDK A;  3D4V A;  3OH6 A;  1C4G A;  1EUV A;  3OLP A;  2R5X A;  5HSH A;  5IYB P;  1K2Y X;  2QR1 A;  3C04 A;  3OC3 C;  3RSM A;  3CWT A;  3T4N A;  1JFI C;  1NVP A;  2G30 A;  4ROE B;  4HJH A;  1YQM A;  2Z8U A;  2VJ0 A;  3N89 A;  4TPS A;  2JPI A;  3ENC A;  1RM1 A;  1QN5 A;  5IYC P;  3OST A;  3CWA A;  2JOI A;  2Z0F A;  1TUO A;  1W80 A;  2D0A A;  2QLV A;  3VN5 A;  3CVT A;  5KL0 A;  4EJZ A;  3OSM A;  3CWU A;  3KTU A;  5IYD P;  1TGH A;  2NOE A;  1LWV A;  2YA3 A;  1KY7 A;  1QN3 A;  3CW7 A;  2PWW A;  4EAI A;  4I8O A;  1UL7 A;  4EJY A;  2JHJ A;  1N39 A;  1Q9U A;  2Y8L A;  3DPT A;  3ASM A;  2NOF A;  4DUL A;  1PZD A;  1VTL E;  3I3W A;  2EIU A;  1WJW A;  2D0B A;  2HZM A;  3OSE A;  3SNS A;  1M5Q 1;  1QN6 A;  2NVM A;  2NOI A;  1VOL B;  4B0A A;  3D7Q A;  1QN4 A;  2IV9 A;  2NOZ A;  1T6A A;  2FUV A;  1V5S A;  2V92 A;  1YQL A;  1C9B B;  4QG5 A;  2NLV A;  1KO9 A;  1LXT A;  2DKC A;  1MP9 A;  1KFQ A;  1YTF A;  3F10 A;  4D7R A;  3HS9 A;  2HL9 A;  2QRD A;  3H1Z A;  4D7Q A;  1KY6 A;  2H5A X;  3PMG A;  5BMN A;  3OGD A;  1TBA B;  2EHP A;  3TDH A;  4BJU A;  1QNB A;  4IL8 A;  1TBP A;  2QRC A;  1NH2 A;  3EAY A;  2NWV A;  1VKL A;  1P5D X;  1YQR A;  2NOB A;  5BMP A;  2OOY A;  3CVS A;  2V8Q A;  3OH9 A;  2XHI A;  1WQA A;  3BKQ X;  2NOL A;  5F9C A;  4C7P A;  3RPJ A;  3TE5 A;  2V9J A;  1D3U A;  1VOK A;  3UW2 A;  1N3A A;  1DIZ A;  3CWS A;  1KYD A;  1JDY A;  1E42 A;  2H4L X;  1QN9 A;  1UT7 A;  2O3O A;  3OCI A;  2MJ7 A;  1QNC A;  5JMV D;  1K35 A;  5EPC A;  3EIK A;  2IV8 A;  2F7L A;  1LWW A;  2OOX A;  3KRM A;  5JN5 A;  2I5W A;  1M3Q A;  4EAG A;  4MRQ A;  1YTB A;  2NOH A;  4WXA A;  2FKF A;  1R4X A;  1PVS A;  2MZ8 A;  1M3H A;  1AIS A;  3F0Z A;  1KYF A;  4EAK A;  1NGM A;  1LWY A;  2ZFD B;  1PCJ X;  4WX8 A;  1QNE A;  2EHB D;  2LAE A;  1XSZ A;  4WZS D;  1PCZ A;  1EBM A;  1P5G X;  1QTS A;  2Y8Q A;  2HKP A;  1QN8 A;  4ROC B;  1J3M A;  1FN7 A;  4EAL A;  1YQK A;  2DKA A;  4CFF A;  4ROD B;  3IH7 A;  1N3C A;  1KYU A;  5AN4 A;  3DPU A;  1QTP A;  1VTO A;  1HU0 A;  2D0C A;  3ULX A;  1KFI A;  1B9K A;  2HL8 A;  2YH5 A;  2FKM X;  3I0X A;  3ENO C;  4PY5 A;  3NA5 A;  2FGT A;  3I0W A;  1PCM X;  2HZS A;  3HS8 A;  2JHN A;  1QN7 A;  4Q11 A;  4EAJ A;  1CDW A;  1MPG A;  2DKD A;  1C47 A; 
#chains in the Genus database with same CATH homology
 3PDK A;  1VKL A;  1P5D X;  5BMP A;  1C4G A;  1PCJ X;  4WX8 A;  3OLP A;  2EIU A;  5HSH A;  3I3W A;  1K2Y X;  1WJW A;  1WQA A;  3BKQ X;  3C04 A;  1P5G X;  5F9C A;  3RSM A;  3UW2 A;  1JDY A;  4HJH A;  2H4L X;  2FUV A;  2DKA A;  4QG5 A;  5JMV D;  1LXT A;  2JPI A;  1K35 A;  5EPC A;  3ENC A;  2DKC A;  1KFQ A;  1KFI A;  2F7L A;  2Z0F A;  1TUO A;  2FKM X;  2H5A X;  3ENO C;  3NA5 A;  3PMG A;  4MRQ A;  5KL0 A;  1PCM X;  5BMN A;  5JN5 A;  2EHP A;  4WXA A;  4BJU A;  2FKF A;  4IL8 A;  2DKD A;  1C47 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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