3PMGA

Structure of rabbit muscle phosphoglucomutase at 2.4 angstroms resolution. use of freezing point depressant and reduced temperature to enhance diffractivity
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ALPHA-D-GLUCOSE-1,6-BISPHOSPHATE
publication title Structure of rabbit muscle phosphoglucomutase refined at 2.4 A resolution.
pubmed doi rcsb
molecule tags Phosphotransferase
total genus 175
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1995-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3pmgA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pmgA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pmgA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pmgA01
2FKMX 4MRQA 2EIUA 2H4LX 1PCJX 1WQAA 1LXTA 4IL8A 4WX8A 3I3WA 1P5GX 5JMVD 2H5AX 1VKLA 1PCMX 5BMNA 1C4GA 3PMGA 2DKCA 2DKDA 2Z0FA 2FKFA 2JPIA 3C04A 5JN5A 1TUOA 2FUVA 3RSMA 3ENOC 2DKAA 1KFQA 4HJHA 2F7LA 3NA5A 1KFIA 3OLPA 5BMPA 5F9CA 3BKQX 1JDYA 4WXAA 3ENCA 1WJWA 5KL0A 5EPCA 2EHPA 4QG5A 3UW2A 4BJUA 1K35A 3PDKA 1P5DX 5HSHA 1C47A 1K2YX
chains in the Genus database with same CATH superfamily
3H1ZA 1QTSA 1DIZA 1V5SA 3DPUA 4MRQA 3OH6A 1M3QA 2IV9A 3HS9A 2EIUA 4TPSA 2HKPA 2V8QA 5IYBP 5IYDP 1QN9A 2NWVA 1PCMX 3DPTA 4EAJA 1TGHA 1C4GA 3I0XA 1XSZA 2DKCA 2Z0FA 4EALA 1QN7A 1PZDA 1KYUA 2Y8LA 3ENOC 4WZSD 2DKAA 2Y8QA 4ROEB 1UT7A 2F7LA 2NLVA 4I8OA 1QNAA 2EHBD 3HS8A 3BKQX 2MZ8A 1YQMA 3OSMA 2JHJA 1N39A 2Z8UA 5EPCA 1CDWA 1QN4A 4QG5A 1YTFA 3CWUA 1KY6A 1EUVA 4D7QA 4DULA 5HSHA 1M3HA 1NH2A 1QNEA 2NOHA 1N3CA 1QN3A 1YQKA 1TBPA 2YH5A 2V9JA 1EBMA 2D0CA 1E42A 1MPGA 1J3MA 2H5AX 2HZSA 2JHNA 1C9BB 3SNSA 1QN6A 1UT4A 2MJ7A 3PMGA 3VN5A 2QRCA 2DKDA 4EJZA 2LAEA 2JPIA 1FN7A 3F0ZA 1KY7A 1TUOA 1B9KA 3KRMA 1QN5A 2D0AA 3D4VA 2NOZA 3OLPA 1KFIA 3I0WA 2HZMA 2OOXA 1YQRA 5BMPA 2NOIA 1M5Q1 1JDYA 2QREA 2QLVA 1WJWA 3ENCA 5KL0A 3EAYA 4B0AA 2NVMA 3F10A 3TE5A 1HU0A 3ASMA 1C47A 3OSEA 1LWYA 1LWVA 3CW7A 2FKMX 3CWAA 2D0BA 2QR1A 3OSTA 1T6AA 4EJYA 2HL9A 2H4LX 1PCJX 3KTUA 1QTPA 1W80A 1LXTA 1WQAA 1YTBA 2YA3A 1P5GX 3I3WA 2JOIA 3CVTA 1NVPA 3OGDA 1LWWA 5BMNA 1AISA 3OH9A 3EIKA 3C04A 1PVSA 2FKFA 4CFFA 2FUVA 2IV8A 3RSMA 3CWSA 4EAGA 4PY5A 1VTLE 1KFQA 2NOLA 4HJHA 2NOBA 1VOKA 2V92A 2HL8A 1KYFA 3IH7A 1VTOA 1KO9A 3TDHA 4C7PA 4WXAA 4EAKA 1RM1A 2O3OA 1MP9A 3UW2A 2R5XA 1P5DX 3PDKA 2XHIA 2I5WA 2NOFA 1JFIC 2PWWA 3N89A 4RODB 2QRDA 1VOLB 5IYCP 1Q9UA 2FGTA 3OCIA 4WX8A 4IL8A 1YQLA 3ULXA 5JMVD 1NGMA 1QNBA 1VKLA 1R4XA 2OOYA 1QN8A 3RPJA 4D7RA 4ROCB 1QNCA 2NOEA 1PCZA 2VJ0A 1D3UA 3OC3C 4EAIA 3CWTA 5JN5A 2EHPA 1TBAB 5AN4A 4Q11A 3NA5A 1KYDA 1UL7A 5F9CA 2ZFDB 2G30A 3D7QA 1N3AA 4BJUA 1K35A 3CVSA 3T4NA 1K2YX
chains in the Genus database with same CATH topology
2FKMX 4MRQA 2EIUA 2H4LX 1PCJX 1WQAA 1LXTA 4IL8A 4WX8A 3I3WA 1P5GX 5JMVD 2H5AX 1VKLA 1PCMX 5BMNA 1C4GA 3PMGA 2DKCA 2DKDA 2Z0FA 2FKFA 2JPIA 3C04A 5JN5A 1TUOA 2FUVA 3RSMA 3ENOC 2DKAA 1KFQA 4HJHA 2F7LA 3NA5A 1KFIA 3OLPA 5BMPA 5F9CA 3BKQX 1JDYA 4WXAA 3ENCA 1WJWA 5KL0A 5EPCA 2EHPA 4QG5A 3UW2A 4BJUA 1K35A 3PDKA 1P5DX 5HSHA 1C47A 1K2YX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FKM X;  4MRQ A;  2EIU A;  2H4L X;  1PCJ X;  1WQA A;  1LXT A;  4IL8 A;  4WX8 A;  3I3W A;  1P5G X;  5JMV D;  2H5A X;  1VKL A;  1PCM X;  5BMN A;  1C4G A;  3PMG A;  2DKC A;  2DKD A;  2Z0F A;  2FKF A;  2JPI A;  3C04 A;  5JN5 A;  1TUO A;  2FUV A;  3RSM A;  3ENO C;  2DKA A;  1KFQ A;  4HJH A;  2F7L A;  3NA5 A;  1KFI A;  3OLP A;  5BMP A;  5F9C A;  3BKQ X;  1JDY A;  4WXA A;  3ENC A;  1WJW A;  5KL0 A;  5EPC A;  2EHP A;  4QG5 A;  3UW2 A;  4BJU A;  1K35 A;  3PDK A;  1P5D X;  5HSH A;  1C47 A;  1K2Y X; 
#chains in the Genus database with same CATH topology
 3H1Z A;  1QTS A;  1DIZ A;  1V5S A;  3DPU A;  4MRQ A;  3OH6 A;  1M3Q A;  2IV9 A;  3HS9 A;  2EIU A;  4TPS A;  2HKP A;  2V8Q A;  5IYB P;  5IYD P;  1QN9 A;  2NWV A;  1PCM X;  3DPT A;  4EAJ A;  1TGH A;  1C4G A;  3I0X A;  1XSZ A;  2DKC A;  2Z0F A;  4EAL A;  1QN7 A;  1PZD A;  1KYU A;  2Y8L A;  3ENO C;  4WZS D;  2DKA A;  2Y8Q A;  4ROE B;  1UT7 A;  2F7L A;  2NLV A;  4I8O A;  1QNA A;  2EHB D;  3HS8 A;  3BKQ X;  2MZ8 A;  1YQM A;  3OSM A;  2JHJ A;  1N39 A;  2Z8U A;  5EPC A;  1CDW A;  1QN4 A;  4QG5 A;  1YTF A;  3CWU A;  1KY6 A;  1EUV A;  4D7Q A;  4DUL A;  5HSH A;  1M3H A;  1NH2 A;  1QNE A;  2NOH A;  1N3C A;  1QN3 A;  1YQK A;  1TBP A;  2YH5 A;  2V9J A;  1EBM A;  2D0C A;  1E42 A;  1MPG A;  1J3M A;  2H5A X;  2HZS A;  2JHN A;  1C9B B;  3SNS A;  1QN6 A;  1UT4 A;  2MJ7 A;  3PMG A;  3VN5 A;  2QRC A;  2DKD A;  4EJZ A;  2LAE A;  2JPI A;  1FN7 A;  3F0Z A;  1KY7 A;  1TUO A;  1B9K A;  3KRM A;  1QN5 A;  2D0A A;  3D4V A;  2NOZ A;  3OLP A;  1KFI A;  3I0W A;  2HZM A;  2OOX A;  1YQR A;  5BMP A;  2NOI A;  1M5Q 1;  1JDY A;  2QRE A;  2QLV A;  1WJW A;  3ENC A;  5KL0 A;  3EAY A;  4B0A A;  2NVM A;  3F10 A;  3TE5 A;  1HU0 A;  3ASM A;  1C47 A;  3OSE A;  1LWY A;  1LWV A;  3CW7 A;  2FKM X;  3CWA A;  2D0B A;  2QR1 A;  3OST A;  1T6A A;  4EJY A;  2HL9 A;  2H4L X;  1PCJ X;  3KTU A;  1QTP A;  1W80 A;  1LXT A;  1WQA A;  1YTB A;  2YA3 A;  1P5G X;  3I3W A;  2JOI A;  3CVT A;  1NVP A;  3OGD A;  1LWW A;  5BMN A;  1AIS A;  3OH9 A;  3EIK A;  3C04 A;  1PVS A;  2FKF A;  4CFF A;  2FUV A;  2IV8 A;  3RSM A;  3CWS A;  4EAG A;  4PY5 A;  1VTL E;  1KFQ A;  2NOL A;  4HJH A;  2NOB A;  1VOK A;  2V92 A;  2HL8 A;  1KYF A;  3IH7 A;  1VTO A;  1KO9 A;  3TDH A;  4C7P A;  4WXA A;  4EAK A;  1RM1 A;  2O3O A;  1MP9 A;  3UW2 A;  2R5X A;  1P5D X;  3PDK A;  2XHI A;  2I5W A;  2NOF A;  1JFI C;  2PWW A;  3N89 A;  4ROD B;  2QRD A;  1VOL B;  5IYC P;  1Q9U A;  2FGT A;  3OCI A;  4WX8 A;  4IL8 A;  1YQL A;  3ULX A;  5JMV D;  1NGM A;  1QNB A;  1VKL A;  1R4X A;  2OOY A;  1QN8 A;  3RPJ A;  4D7R A;  4ROC B;  1QNC A;  2NOE A;  1PCZ A;  2VJ0 A;  1D3U A;  3OC3 C;  4EAI A;  3CWT A;  5JN5 A;  2EHP A;  1TBA B;  5AN4 A;  4Q11 A;  3NA5 A;  1KYD A;  1UL7 A;  5F9C A;  2ZFD B;  2G30 A;  3D7Q A;  1N3A A;  4BJU A;  1K35 A;  3CVS A;  3T4N A;  1K2Y X; 
#chains in the Genus database with same CATH homology
 2FKM X;  4MRQ A;  2EIU A;  2H4L X;  1PCJ X;  1WQA A;  1LXT A;  4IL8 A;  4WX8 A;  3I3W A;  1P5G X;  5JMV D;  2H5A X;  1VKL A;  1PCM X;  5BMN A;  1C4G A;  3PMG A;  2DKC A;  2DKD A;  2Z0F A;  2FKF A;  2JPI A;  3C04 A;  5JN5 A;  1TUO A;  2FUV A;  3RSM A;  3ENO C;  2DKA A;  1KFQ A;  4HJH A;  2F7L A;  3NA5 A;  1KFI A;  3OLP A;  5BMP A;  5F9C A;  3BKQ X;  1JDY A;  4WXA A;  3ENC A;  1WJW A;  5KL0 A;  5EPC A;  2EHP A;  4QG5 A;  3UW2 A;  4BJU A;  1K35 A;  3PDK A;  1P5D X;  5HSH A;  1C47 A;  1K2Y X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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