3PMGA

Structure of rabbit muscle phosphoglucomutase at 2.4 angstroms resolution. use of freezing point depressant and reduced temperature to enhance diffractivity
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Phosphotransferase
molecule keywords ALPHA-D-GLUCOSE-1,6-BISPHOSPHATE
publication title Structure of rabbit muscle phosphoglucomutase refined at 2.4 A resolution.
pubmed doi rcsb
total genus 175
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1995-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3pmgA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pmgA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pmgA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3pmgA01
2H4LX 5BMNA 3RSMA 3ENOC 1PCMX 5BMPA 4QG5A 3PDKA 1KFIA 2F7LA 4WX8A 1TUOA 1K2YX 5F9CA 1K35A 2FKFA 3BKQX 3I3WA 1C4GA 1VKLA 5HSHA 3NA5A 4WXAA 2FUVA 5KL0A 2H5AX 2DKCA 2DKAA 3C04A 1PCJX 3ENCA 1WQAA 1LXTA 2FKMX 1KFQA 5JN5A 1WJWA 2EIUA 4HJHA 4MRQA 2JPIA 1JDYA 1P5GX 5JMVD 2EHPA 1P5DX 3PMGA 1C47A 2Z0FA 4BJUA 3OLPA 3UW2A 2DKDA 4IL8A 5EPCA
chains in the Genus database with same CATH superfamily
3SNSA 1PCMX 1FN7A 2NOEA 5BMPA 3CVTA 1YQMA 3CWTA 4QG5A 1QNBA 1TUOA 3OC3C 1UL7A 5F9CA 3H1ZA 3OH9A 1M3HA 1LWVA 1W80A 2Y8QA 1KY6A 1NVPA 3OSTA 2NOFA 3N89A 4RODB 4EJZA 2HZMA 2FGTA 1PCZA 1RM1A 2D0AA 1TGHA 2NWVA 3IH7A 1LXTA 2FKMX 4EJYA 4HJHA 4Q11A 1TBAB 3ULXA 1PZDA 1YQRA 1PVSA 4TPSA 1EBMA 1QNEA 4PY5A 1C47A 1YTFA 2NLVA 3OLPA 4EAKA 4IL8A 1UT7A 2H4LX 2HL8A 3RSMA 3VN5A 1NH2A 4C7PA 3KRMA 1M3QA 2NOHA 1KFIA 2F7LA 2QRCA 3DPTA 1QN7A 2FKFA 2NOBA 3TDHA 5HSHA 2QR1A 3D7QA 2EHBD 1AISA 4EALA 2NOZA 1QN3A 2H5AX 2Z8UA 4EAJA 2NOIA 1Q9UA 3OH6A 2V92A 2OOYA 2OOXA 2DKAA 3CWUA 4DULA 1TBPA 3C04A 1KYUA 3ENCA 2MZ8A 4ROEB 1YTBA 2QLVA 5JN5A 1WJWA 2EIUA 1QN4A 2D0BA 5IYDP 3T4NA 1P5GX 2IV9A 1QNAA 1HU0A 1T6AA 3OSMA 2EHPA 1V5SA 5IYCP 3HS8A 5AN4A 1UT4A 2Z0FA 3RPJA 4EAIA 2O3OA 5BMNA 3ENOC 3HS9A 1QTPA 3CW7A 1R4XA 2NVMA 1N3CA 4B0AA 1K2YX 1K35A 2VJ0A 1NGMA 1MPGA 3I3WA 1VTOA 2HKPA 1C4GA 1VKLA 1N3AA 4WXAA 1LWWA 2D0CA 3EAYA 2FUVA 5KL0A 2MJ7A 2DKCA 4EAGA 2YA3A 2HZSA 3F0ZA 3I0WA 4ROCB 2I5WA 2ZFDB 2NOLA 1EUVA 1J3MA 3EIKA 2YH5A 1QN9A 1KFQA 3OSEA 1XSZA 3KTUA 3D4VA 1D3UA 1JDYA 2JHNA 4I8OA 1VOLB 1LWYA 1YQKA 3CWSA 3DPUA 1P5DX 3PMGA 1QNCA 1E42A 2DKDA 3UW2A 3OGDA 2LAEA 1KYFA 4CFFA 2V8QA 1KYDA 1QN8A 1MP9A 3PDKA 1N39A 1QN6A 5IYBP 3BKQX 1QTSA 1KY7A 1B9KA 1C9BB 4D7QA 1VTLE 3NA5A 1QN5A 2JHJA 4D7RA 3F10A 3ASMA 2PWWA 1VOKA 1PCJX 2JOIA 3I0XA 1WQAA 2HL9A 1JFIC 1CDWA 3CVSA 4MRQA 2JPIA 2XHIA 3OCIA 3CWAA 2V9JA 5JMVD 2G30A 2QREA 2R5XA 1DIZA 2IV8A 2Y8LA 2QRDA 3TE5A 4WZSD 4BJUA 1YQLA 1KO9A 4WX8A 1M5Q1 5EPCA
chains in the Genus database with same CATH topology
2H4LX 5BMNA 3RSMA 3ENOC 1PCMX 5BMPA 4QG5A 3PDKA 1KFIA 2F7LA 4WX8A 1TUOA 1K2YX 5F9CA 1K35A 2FKFA 3BKQX 3I3WA 1C4GA 1VKLA 5HSHA 3NA5A 4WXAA 2FUVA 5KL0A 2H5AX 2DKCA 2DKAA 3C04A 1PCJX 3ENCA 1WQAA 1LXTA 2FKMX 1KFQA 5JN5A 1WJWA 2EIUA 4HJHA 4MRQA 2JPIA 1JDYA 1P5GX 5JMVD 2EHPA 1P5DX 3PMGA 1C47A 2Z0FA 4BJUA 3OLPA 3UW2A 2DKDA 4IL8A 5EPCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H4L X;  5BMN A;  3RSM A;  3ENO C;  1PCM X;  5BMP A;  4QG5 A;  3PDK A;  1KFI A;  2F7L A;  4WX8 A;  1TUO A;  1K2Y X;  5F9C A;  1K35 A;  2FKF A;  3BKQ X;  3I3W A;  1C4G A;  1VKL A;  5HSH A;  3NA5 A;  4WXA A;  2FUV A;  5KL0 A;  2H5A X;  2DKC A;  2DKA A;  3C04 A;  1PCJ X;  3ENC A;  1WQA A;  1LXT A;  2FKM X;  1KFQ A;  5JN5 A;  1WJW A;  2EIU A;  4HJH A;  4MRQ A;  2JPI A;  1JDY A;  1P5G X;  5JMV D;  2EHP A;  1P5D X;  3PMG A;  1C47 A;  2Z0F A;  4BJU A;  3OLP A;  3UW2 A;  2DKD A;  4IL8 A;  5EPC A; 
#chains in the Genus database with same CATH topology
 3SNS A;  1PCM X;  1FN7 A;  2NOE A;  5BMP A;  3CVT A;  1YQM A;  3CWT A;  4QG5 A;  1QNB A;  1TUO A;  3OC3 C;  1UL7 A;  5F9C A;  3H1Z A;  3OH9 A;  1M3H A;  1LWV A;  1W80 A;  2Y8Q A;  1KY6 A;  1NVP A;  3OST A;  2NOF A;  3N89 A;  4ROD B;  4EJZ A;  2HZM A;  2FGT A;  1PCZ A;  1RM1 A;  2D0A A;  1TGH A;  2NWV A;  3IH7 A;  1LXT A;  2FKM X;  4EJY A;  4HJH A;  4Q11 A;  1TBA B;  3ULX A;  1PZD A;  1YQR A;  1PVS A;  4TPS A;  1EBM A;  1QNE A;  4PY5 A;  1C47 A;  1YTF A;  2NLV A;  3OLP A;  4EAK A;  4IL8 A;  1UT7 A;  2H4L X;  2HL8 A;  3RSM A;  3VN5 A;  1NH2 A;  4C7P A;  3KRM A;  1M3Q A;  2NOH A;  1KFI A;  2F7L A;  2QRC A;  3DPT A;  1QN7 A;  2FKF A;  2NOB A;  3TDH A;  5HSH A;  2QR1 A;  3D7Q A;  2EHB D;  1AIS A;  4EAL A;  2NOZ A;  1QN3 A;  2H5A X;  2Z8U A;  4EAJ A;  2NOI A;  1Q9U A;  3OH6 A;  2V92 A;  2OOY A;  2OOX A;  2DKA A;  3CWU A;  4DUL A;  1TBP A;  3C04 A;  1KYU A;  3ENC A;  2MZ8 A;  4ROE B;  1YTB A;  2QLV A;  5JN5 A;  1WJW A;  2EIU A;  1QN4 A;  2D0B A;  5IYD P;  3T4N A;  1P5G X;  2IV9 A;  1QNA A;  1HU0 A;  1T6A A;  3OSM A;  2EHP A;  1V5S A;  5IYC P;  3HS8 A;  5AN4 A;  1UT4 A;  2Z0F A;  3RPJ A;  4EAI A;  2O3O A;  5BMN A;  3ENO C;  3HS9 A;  1QTP A;  3CW7 A;  1R4X A;  2NVM A;  1N3C A;  4B0A A;  1K2Y X;  1K35 A;  2VJ0 A;  1NGM A;  1MPG A;  3I3W A;  1VTO A;  2HKP A;  1C4G A;  1VKL A;  1N3A A;  4WXA A;  1LWW A;  2D0C A;  3EAY A;  2FUV A;  5KL0 A;  2MJ7 A;  2DKC A;  4EAG A;  2YA3 A;  2HZS A;  3F0Z A;  3I0W A;  4ROC B;  2I5W A;  2ZFD B;  2NOL A;  1EUV A;  1J3M A;  3EIK A;  2YH5 A;  1QN9 A;  1KFQ A;  3OSE A;  1XSZ A;  3KTU A;  3D4V A;  1D3U A;  1JDY A;  2JHN A;  4I8O A;  1VOL B;  1LWY A;  1YQK A;  3CWS A;  3DPU A;  1P5D X;  3PMG A;  1QNC A;  1E42 A;  2DKD A;  3UW2 A;  3OGD A;  2LAE A;  1KYF A;  4CFF A;  2V8Q A;  1KYD A;  1QN8 A;  1MP9 A;  3PDK A;  1N39 A;  1QN6 A;  5IYB P;  3BKQ X;  1QTS A;  1KY7 A;  1B9K A;  1C9B B;  4D7Q A;  1VTL E;  3NA5 A;  1QN5 A;  2JHJ A;  4D7R A;  3F10 A;  3ASM A;  2PWW A;  1VOK A;  1PCJ X;  2JOI A;  3I0X A;  1WQA A;  2HL9 A;  1JFI C;  1CDW A;  3CVS A;  4MRQ A;  2JPI A;  2XHI A;  3OCI A;  3CWA A;  2V9J A;  5JMV D;  2G30 A;  2QRE A;  2R5X A;  1DIZ A;  2IV8 A;  2Y8L A;  2QRD A;  3TE5 A;  4WZS D;  4BJU A;  1YQL A;  1KO9 A;  4WX8 A;  1M5Q 1;  5EPC A; 
#chains in the Genus database with same CATH homology
 2H4L X;  5BMN A;  3RSM A;  3ENO C;  1PCM X;  5BMP A;  4QG5 A;  3PDK A;  1KFI A;  2F7L A;  4WX8 A;  1TUO A;  1K2Y X;  5F9C A;  1K35 A;  2FKF A;  3BKQ X;  3I3W A;  1C4G A;  1VKL A;  5HSH A;  3NA5 A;  4WXA A;  2FUV A;  5KL0 A;  2H5A X;  2DKC A;  2DKA A;  3C04 A;  1PCJ X;  3ENC A;  1WQA A;  1LXT A;  2FKM X;  1KFQ A;  5JN5 A;  1WJW A;  2EIU A;  4HJH A;  4MRQ A;  2JPI A;  1JDY A;  1P5G X;  5JMV D;  2EHP A;  1P5D X;  3PMG A;  1C47 A;  2Z0F A;  4BJU A;  3OLP A;  3UW2 A;  2DKD A;  4IL8 A;  5EPC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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