2FKMX

Pmm/pgm s108d mutant with alpha-d-glucose 1,6-bisphosphate bound
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
454
structure length
454
Chain Sequence
PASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGDHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Phosphomannomutase/phosphoglucomutase
publication title The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 170
structure length 454
sequence length 454
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2006-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2fkmX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2fkmX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2fkmX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2fkmX02
2FKFA 1WJWA 3NA5A 4IL8A 3UW2A 1TUOA 2FKMX 3ENCA 3PMGA 1K2YX 1K35A 2H5AX 2Z0FA 1KFIA 3I3WA 3RSMA 4WX8A 3OLPA 5JMVD 3C04A 1VKLA 5BMPA 1P5GX 1PCMX 3PDKA 2H4LX 1PCJX 5F9CA 5EPCA 2DKCA 5JN5A 2FUVA 2DKAA 5KL0A 2EHPA 1C47A 5HSHA 1JDYA 4QG5A 4WXAA 2EIUA 2DKDA 1LXTA 3ENOC 1WQAA 4MRQA 3BKQX 4HJHA 2JPIA 1C4GA 1KFQA 1P5DX 5BMNA 4BJUA 2F7LA
chains in the Genus database with same CATH superfamily
2FKFA 1QN3A 4IL8A 3ULXA 1M3HA 1YQMA 4DULA 1UT4A 3I3WA 4B0AA 3H1ZA 3C04A 3SNSA 1NH2A 4C7PA 2IV8A 3D4VA 1M5Q1 4ROEB 2MJ7A 1QNAA 1QNCA 1N3AA 4EJYA 4I8OA 1YQRA 3DPUA 2YA3A 4D7QA 1Q9UA 1KYFA 4EAJA 4TPSA 2Y8LA 3CWTA 2O3OA 3IH7A 2EIUA 1YQKA 1LXTA 2VJ0A 3CW7A 1TBPA 4EAIA 1QN6A 4HJHA 2ZFDB 1P5DX 3F0ZA 5BMNA 3CVSA 4BJUA 2XHIA 1KY6A 2V92A 1WJWA 3NA5A 2JOIA 2Z8UA 3RPJA 3UW2A 4RODB 1AISA 3KTUA 2HKPA 1NGMA 4EAGA 1PVSA 3PMGA 1TBAB 3OSTA 2H5AX 2EHBD 4Q11A 3CWSA 2HL8A 1KO9A 4EJZA 2R5XA 2V9JA 2Y8QA 1M3QA 3KRMA 2OOYA 1QNBA 1PCJX 5IYBP 3OCIA 1QTPA 2HL9A 5IYDP 5JN5A 1QNEA 1VTLE 3CWUA 2DKAA 2IV9A 2EHPA 2NLVA 5HSHA 3CWAA 1PZDA 4EAKA 1PCZA 1KY7A 1VOKA 1EUVA 2DKDA 1WQAA 3DPTA 1YTBA 1E42A 1J3MA 3ASMA 1C4GA 2F7LA 1UT7A 1QN5A 2NOLA 3OH6A 2QLVA 2D0AA 3HS8A 1TUOA 2FKMX 1XSZA 1YTFA 3VN5A 1MP9A 1KFIA 4WX8A 5JMVD 1QTSA 1VKLA 2QRDA 2YH5A 3OSMA 5BMPA 1P5GX 1N39A 1PCMX 2NOHA 1CDWA 2H4LX 3I0WA 3TDHA 1HU0A 2DKCA 2QRCA 3HS9A 4ROCB 3OH9A 1N3CA 1W80A 1D3UA 3D7QA 1JFIC 3OC3C 4CFFA 3EIKA 4QG5A 4WXAA 5AN4A 1RM1A 1QN9A 2JHJA 1KYDA 2MZ8A 2FGTA 1KYUA 3OSEA 1QN4A 2HZSA 5IYCP 2JHNA 3BKQX 1LWVA 1T6AA 1MPGA 2G30A 3T4NA 1FN7A 1TGHA 1V5SA 2NOZA 4PY5A 3ENCA 2QR1A 2NOEA 1LWYA 1K2YX 2OOXA 2HZMA 1K35A 2V8QA 2Z0FA 2QREA 1B9KA 4D7RA 1UL7A 3RSMA 3OGDA 1YQLA 3OLPA 1LWWA 1QN8A 2NOBA 2PWWA 4WZSD 3PDKA 1DIZA 1EBMA 2D0BA 5F9CA 5EPCA 2NOFA 2I5WA 2FUVA 1NVPA 4EALA 5KL0A 2NVMA 2NWVA 1C9BB 1VOLB 3EAYA 1C47A 3CVTA 2NOIA 1JDYA 3N89A 3TE5A 2D0CA 2LAEA 3ENOC 4MRQA 1R4XA 1QN7A 1VTOA 2JPIA 1KFQA 3I0XA 3F10A
chains in the Genus database with same CATH topology
2FKFA 1WJWA 3NA5A 4IL8A 3UW2A 1TUOA 2FKMX 3ENCA 3PMGA 1K2YX 1K35A 2H5AX 2Z0FA 1KFIA 3I3WA 3RSMA 4WX8A 3OLPA 5JMVD 3C04A 1VKLA 5BMPA 1P5GX 1PCMX 3PDKA 2H4LX 1PCJX 5F9CA 5EPCA 2DKCA 5JN5A 2FUVA 2DKAA 5KL0A 2EHPA 1C47A 5HSHA 1JDYA 4QG5A 4WXAA 2EIUA 2DKDA 1LXTA 3ENOC 1WQAA 4MRQA 3BKQX 4HJHA 2JPIA 1C4GA 1KFQA 1P5DX 5BMNA 4BJUA 2F7LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FKF A;  1WJW A;  3NA5 A;  4IL8 A;  3UW2 A;  1TUO A;  2FKM X;  3ENC A;  3PMG A;  1K2Y X;  1K35 A;  2H5A X;  2Z0F A;  1KFI A;  3I3W A;  3RSM A;  4WX8 A;  3OLP A;  5JMV D;  3C04 A;  1VKL A;  5BMP A;  1P5G X;  1PCM X;  3PDK A;  2H4L X;  1PCJ X;  5F9C A;  5EPC A;  2DKC A;  5JN5 A;  2FUV A;  2DKA A;  5KL0 A;  2EHP A;  1C47 A;  5HSH A;  1JDY A;  4QG5 A;  4WXA A;  2EIU A;  2DKD A;  1LXT A;  3ENO C;  1WQA A;  4MRQ A;  3BKQ X;  4HJH A;  2JPI A;  1C4G A;  1KFQ A;  1P5D X;  5BMN A;  4BJU A;  2F7L A; 
#chains in the Genus database with same CATH topology
 2FKF A;  1QN3 A;  4IL8 A;  3ULX A;  1M3H A;  1YQM A;  4DUL A;  1UT4 A;  3I3W A;  4B0A A;  3H1Z A;  3C04 A;  3SNS A;  1NH2 A;  4C7P A;  2IV8 A;  3D4V A;  1M5Q 1;  4ROE B;  2MJ7 A;  1QNA A;  1QNC A;  1N3A A;  4EJY A;  4I8O A;  1YQR A;  3DPU A;  2YA3 A;  4D7Q A;  1Q9U A;  1KYF A;  4EAJ A;  4TPS A;  2Y8L A;  3CWT A;  2O3O A;  3IH7 A;  2EIU A;  1YQK A;  1LXT A;  2VJ0 A;  3CW7 A;  1TBP A;  4EAI A;  1QN6 A;  4HJH A;  2ZFD B;  1P5D X;  3F0Z A;  5BMN A;  3CVS A;  4BJU A;  2XHI A;  1KY6 A;  2V92 A;  1WJW A;  3NA5 A;  2JOI A;  2Z8U A;  3RPJ A;  3UW2 A;  4ROD B;  1AIS A;  3KTU A;  2HKP A;  1NGM A;  4EAG A;  1PVS A;  3PMG A;  1TBA B;  3OST A;  2H5A X;  2EHB D;  4Q11 A;  3CWS A;  2HL8 A;  1KO9 A;  4EJZ A;  2R5X A;  2V9J A;  2Y8Q A;  1M3Q A;  3KRM A;  2OOY A;  1QNB A;  1PCJ X;  5IYB P;  3OCI A;  1QTP A;  2HL9 A;  5IYD P;  5JN5 A;  1QNE A;  1VTL E;  3CWU A;  2DKA A;  2IV9 A;  2EHP A;  2NLV A;  5HSH A;  3CWA A;  1PZD A;  4EAK A;  1PCZ A;  1KY7 A;  1VOK A;  1EUV A;  2DKD A;  1WQA A;  3DPT A;  1YTB A;  1E42 A;  1J3M A;  3ASM A;  1C4G A;  2F7L A;  1UT7 A;  1QN5 A;  2NOL A;  3OH6 A;  2QLV A;  2D0A A;  3HS8 A;  1TUO A;  2FKM X;  1XSZ A;  1YTF A;  3VN5 A;  1MP9 A;  1KFI A;  4WX8 A;  5JMV D;  1QTS A;  1VKL A;  2QRD A;  2YH5 A;  3OSM A;  5BMP A;  1P5G X;  1N39 A;  1PCM X;  2NOH A;  1CDW A;  2H4L X;  3I0W A;  3TDH A;  1HU0 A;  2DKC A;  2QRC A;  3HS9 A;  4ROC B;  3OH9 A;  1N3C A;  1W80 A;  1D3U A;  3D7Q A;  1JFI C;  3OC3 C;  4CFF A;  3EIK A;  4QG5 A;  4WXA A;  5AN4 A;  1RM1 A;  1QN9 A;  2JHJ A;  1KYD A;  2MZ8 A;  2FGT A;  1KYU A;  3OSE A;  1QN4 A;  2HZS A;  5IYC P;  2JHN A;  3BKQ X;  1LWV A;  1T6A A;  1MPG A;  2G30 A;  3T4N A;  1FN7 A;  1TGH A;  1V5S A;  2NOZ A;  4PY5 A;  3ENC A;  2QR1 A;  2NOE A;  1LWY A;  1K2Y X;  2OOX A;  2HZM A;  1K35 A;  2V8Q A;  2Z0F A;  2QRE A;  1B9K A;  4D7R A;  1UL7 A;  3RSM A;  3OGD A;  1YQL A;  3OLP A;  1LWW A;  1QN8 A;  2NOB A;  2PWW A;  4WZS D;  3PDK A;  1DIZ A;  1EBM A;  2D0B A;  5F9C A;  5EPC A;  2NOF A;  2I5W A;  2FUV A;  1NVP A;  4EAL A;  5KL0 A;  2NVM A;  2NWV A;  1C9B B;  1VOL B;  3EAY A;  1C47 A;  3CVT A;  2NOI A;  1JDY A;  3N89 A;  3TE5 A;  2D0C A;  2LAE A;  3ENO C;  4MRQ A;  1R4X A;  1QN7 A;  1VTO A;  2JPI A;  1KFQ A;  3I0X A;  3F10 A; 
#chains in the Genus database with same CATH homology
 2FKF A;  1WJW A;  3NA5 A;  4IL8 A;  3UW2 A;  1TUO A;  2FKM X;  3ENC A;  3PMG A;  1K2Y X;  1K35 A;  2H5A X;  2Z0F A;  1KFI A;  3I3W A;  3RSM A;  4WX8 A;  3OLP A;  5JMV D;  3C04 A;  1VKL A;  5BMP A;  1P5G X;  1PCM X;  3PDK A;  2H4L X;  1PCJ X;  5F9C A;  5EPC A;  2DKC A;  5JN5 A;  2FUV A;  2DKA A;  5KL0 A;  2EHP A;  1C47 A;  5HSH A;  1JDY A;  4QG5 A;  4WXA A;  2EIU A;  2DKD A;  1LXT A;  3ENO C;  1WQA A;  4MRQ A;  3BKQ X;  4HJH A;  2JPI A;  1C4G A;  1KFQ A;  1P5D X;  5BMN A;  4BJU A;  2F7L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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