2F6S | Genus

Total Genus 63

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	63
sequence length	180
structure length	180
Chain Sequence	GHMHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfcf2542bf4973e3cd45e33/pdb.gz): 1078 ms

reading 180 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

180 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 22 ms

Adding embedded #jmolscript: select ({0:179});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Helicobacter pylori
publication title	Structure of cell filamentation protein (fic) from Helicobacter pylori rcsb
molecule keywords	cell filamentation protein, putative
total genus	63
structure length	180
sequence length	180
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-11-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	2f6sA00

2G03A 4U0SA 4LU4A 3LETA 5CMTA 2JK8A 4U07A 3N3UA 2VZAA 3ZCBA 3SHGA 3S6AA 4M16A 4WGJA 4X2CA 4XI8A 5JFZA 4NPSA 5CGLA 4U0UA 5JJ6A 5JFFA 3SN9A 4U0ZA 4N67A 5JJ7A 5EU0A 3ZLMA 2VY3A 2F6SA 3SE5A 4PY3A 3CUCA 4U04A 4ITRA 3ZC7A 4X2DA 5CKLA 4X2EA
chains in the Genus database with same CATH superfamily

2G03A 4U0SA 4LU4A 3LETA 5CMTA 2JK8A 4U07A 3N3UA 2VZAA 3ZCBA 1NH1A 3SHGA 3S6AA 4M16A 4WGJA 4X2CA 4XI8A 5JFZA 4NPSA 2NUNA 5CGLA 2NUDA 4U0UA 5JJ6A 5JFFA 3SN9A 4U0ZA 4N67A 5JJ7A 5EU0A 3ZLMA 2VY3A 2F6SA 3SE5A 4PY3A 3CUCA 4U04A 4ITRA 3ZC7A 4X2DA 5CKLA 4X2EA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2G03 A;  4U0S A;  4LU4 A;  3LET A;  5CMT A;  2JK8 A;  4U07 A;  3N3U A;  2VZA A;  3ZCB A;  3SHG A;  3S6A A;  4M16 A;  4WGJ A;  4X2C A;  4XI8 A;  5JFZ A;  4NPS A;  5CGL A;  4U0U A;  5JJ6 A;  5JFF A;  3SN9 A;  4U0Z A;  4N67 A;  5JJ7 A;  5EU0 A;  3ZLM A;  2VY3 A;  2F6S A;  3SE5 A;  4PY3 A;  3CUC A;  4U04 A;  4ITR A;  3ZC7 A;  4X2D A;  5CKL A;  4X2E A; 
#chains in the Genus database with same CATH topology
 2G03 A;  4U0S A;  4LU4 A;  3LET A;  5CMT A;  2JK8 A;  4U07 A;  3N3U A;  2VZA A;  3ZCB A;  1NH1 A;  3SHG A;  3S6A A;  4M16 A;  4WGJ A;  4X2C A;  4XI8 A;  5JFZ A;  4NPS A;  2NUN A;  5CGL A;  2NUD A;  4U0U A;  5JJ6 A;  5JFF A;  3SN9 A;  4U0Z A;  4N67 A;  5JJ7 A;  5EU0 A;  3ZLM A;  2VY3 A;  2F6S A;  3SE5 A;  4PY3 A;  3CUC A;  4U04 A;  4ITR A;  3ZC7 A;  4X2D A;  5CKL A;  4X2E A; 
#chains in the Genus database with same CATH homology
 2G03 A;  4U0S A;  4LU4 A;  3LET A;  5CMT A;  2JK8 A;  4U07 A;  3N3U A;  2VZA A;  3ZCB A;  3SHG A;  3S6A A;  4M16 A;  4WGJ A;  4X2C A;  4XI8 A;  5JFZ A;  4NPS A;  5CGL A;  4U0U A;  5JJ6 A;  5JFF A;  3SN9 A;  4U0Z A;  4N67 A;  5JJ7 A;  5EU0 A;  3ZLM A;  2VY3 A;  2F6S A;  3SE5 A;  4PY3 A;  3CUC A;  4U04 A;  4ITR A;  3ZC7 A;  4X2D A;  5CKL A;  4X2E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2F6SA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations