2G03 | Genus

Total Genus 63

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	63
sequence length	177
structure length	177
Chain Sequence	MKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTDDVDNREIIFKGIEQSYYYEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 177 atoms

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177 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Neisseria meningitidis
publication title	Structure of a putative cell filamentation protein from Neisseria meningitidis. rcsb
molecule keywords	hypothetical protein NMA0004
total genus	63
structure length	177
sequence length	177
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2006-02-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	2g03A00

2F6SA 3LETA 2VY3A 2G03A 5JFFA 4U0ZA 3ZCBA 4N67A 3SHGA 3ZC7A 4U07A 4X2DA 3SE5A 3SN9A 3S6AA 5JFZA 2VZAA 3N3UA 5JJ6A 4U0UA 5EU0A 5CKLA 4XI8A 4U0SA 2JK8A 5CMTA 5JJ7A 3CUCA 4WGJA 4NPSA 4X2CA 4ITRA 4U04A 5CGLA 3ZLMA 4LU4A 4PY3A 4X2EA 4M16A
chains in the Genus database with same CATH superfamily

2F6SA 3LETA 2G03A 2VY3A 5JFFA 4U0ZA 2NUDA 3ZCBA 4N67A 3SHGA 3ZC7A 4U07A 4X2DA 3SE5A 2NUNA 3S6AA 5JFZA 3SN9A 2VZAA 3N3UA 5JJ6A 4U0UA 5EU0A 5CKLA 4XI8A 4U0SA 2JK8A 5CMTA 5JJ7A 3CUCA 4WGJA 4NPSA 1NH1A 4X2CA 4ITRA 4U04A 5CGLA 3ZLMA 4LU4A 4PY3A 4X2EA 4M16A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2F6S A;  3LET A;  2VY3 A;  2G03 A;  5JFF A;  4U0Z A;  3ZCB A;  4N67 A;  3SHG A;  3ZC7 A;  4U07 A;  4X2D A;  3SE5 A;  3SN9 A;  3S6A A;  5JFZ A;  2VZA A;  3N3U A;  5JJ6 A;  4U0U A;  5EU0 A;  5CKL A;  4XI8 A;  4U0S A;  2JK8 A;  5CMT A;  5JJ7 A;  3CUC A;  4WGJ A;  4NPS A;  4X2C A;  4ITR A;  4U04 A;  5CGL A;  3ZLM A;  4LU4 A;  4PY3 A;  4X2E A;  4M16 A; 
#chains in the Genus database with same CATH topology
 2F6S A;  3LET A;  2G03 A;  2VY3 A;  5JFF A;  4U0Z A;  2NUD A;  3ZCB A;  4N67 A;  3SHG A;  3ZC7 A;  4U07 A;  4X2D A;  3SE5 A;  2NUN A;  3S6A A;  5JFZ A;  3SN9 A;  2VZA A;  3N3U A;  5JJ6 A;  4U0U A;  5EU0 A;  5CKL A;  4XI8 A;  4U0S A;  2JK8 A;  5CMT A;  5JJ7 A;  3CUC A;  4WGJ A;  4NPS A;  1NH1 A;  4X2C A;  4ITR A;  4U04 A;  5CGL A;  3ZLM A;  4LU4 A;  4PY3 A;  4X2E A;  4M16 A; 
#chains in the Genus database with same CATH homology
 2F6S A;  3LET A;  2VY3 A;  2G03 A;  5JFF A;  4U0Z A;  3ZCB A;  4N67 A;  3SHG A;  3ZC7 A;  4U07 A;  4X2D A;  3SE5 A;  3SN9 A;  3S6A A;  5JFZ A;  2VZA A;  3N3U A;  5JJ6 A;  4U0U A;  5EU0 A;  5CKL A;  4XI8 A;  4U0S A;  2JK8 A;  5CMT A;  5JJ7 A;  3CUC A;  4WGJ A;  4NPS A;  4X2C A;  4ITR A;  4U04 A;  5CGL A;  3ZLM A;  4LU4 A;  4PY3 A;  4X2E A;  4M16 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2G03A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations