The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
13
|
sequence length |
65
|
structure length |
65
|
Chain Sequence |
FSPETMKARRAWTDVIQTLREHKCQPRLLYPAKLSITIDGETKVFHDKTKFTQYLSTNPALQRII
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1.
pubmed doi rcsb |
| molecule tags |
Rna binding protein
|
| source organism |
Mus musculus
|
| molecule keywords |
ORF 1 protein
|
| total genus |
13
|
| structure length |
65
|
| sequence length |
65
|
| ec nomenclature | |
| pdb deposition date | 2007-06-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF17490 | Tnp_22_dsRBD | L1 transposable element dsRBD-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Rec A Protein; domain 2 | Rec A Protein; domain 2 |
#chains in the Genus database with same CATH superfamily 2JRB A; 2YKQ A; 2YKO A; 2LDY A; 2YKP A; 3SOO A; #chains in the Genus database with same CATH topology 1G18 A; 1UBE A; 1XMV A; 2ZRJ A; 1G19 A; 4PQY A; 4PSA A; 2ODN A; 2ZRN A; 2ODW A; 1U94 A; 2ZRG A; 1UBC A; 2ZRB A; 2REB A; 2ZRC A; 2ZRF A; 5JRJ A; 4PQR A; 4PSK A; 2ZRE A; 2YKQ A; 2OE2 A; 2ZRM A; 2ZRL A; 4PPN A; 2LDY A; 2OES A; 2ZRH A; 2G88 A; 2ZR0 A; 2ZRK A; 2ZRA A; 4PPF A; 4PTL A; 2ZRI A; 4POA A; 4TWZ A; 1AA3 A; 2ZRO A; 2ZR9 A; 2OFO A; 3HR8 A; 1MO5 A; 2ZRD A; 2YKP A; 4PPQ A; 4PQF A; 1MO6 A; 4PSV A; 4PR0 A; 3SOO A; 2ZR7 A; 1XP8 A; 2JRB A; 1MO3 A; 1U99 A; 4OQF A; 4PO9 A; 1XMS A; 2YKO A; 4PO1 A; 1MO4 A; 1UBF A; 4PO8 A; 2ZRP A; 4PPG A; 2OEP A; 1U98 A; 1UBG A; #chains in the Genus database with same CATH homology 2JRB A; 2YKQ A; 2YKO A; 2LDY A; 2YKP A; 3SOO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
