2JV7A

Nmr solution structure of histoplasma capsulatum cbp homodimer
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
78
structure length
78
Chain Sequence
DQPSVGDAFDKYNEAVRVFTQLSSAANCDWAACLSSLSASSAACIAAVGELGLDVPLDLACAATATSSATEACKGCLW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-26)TIV4 (65-68)O1 (28-76)EMPTYTIV5 (74-77)AH2 (32-38)AH4 (58-64)TI2 (70-73)AH3 (42-50)TIV1 (50-53)TI1 (54-57)TIV2 (51-54)Updating...
connected with : NaN
molecule tags Metal binding protein
publication title NMR structure of a fungal virulence factor reveals structural homology with mammalian saposin B.
pubmed doi rcsb
molecule keywords Calcium-binding protein
total genus 16
structure length 78
sequence length 78
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12192 CBP Fungal calcium binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.120 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2jv7A00
2JV7A
chains in the Genus database with same CATH superfamily
3FH5A 4ZW6A 3FUHA 4PW4A 3CZGA 2JD2A 4Q4EA 5AENA 3KEDA 3WQSB 2Y1DA 2QJ1A 4RCVA 3JT1A 3CZEA 3ZHXA 3JSZA 4Y6PA 3UERA 1R0LA 2PUSA 4FLRA 4K5OA 4X2UA 3EBHA 5DULA 2Y1EA 4K5MA 2GTQA 2XPZA 4QMEA 4XN7A 3IIEA 4CXFA 4LUPA 1H19A 1JG9A 2HPOA 3CHSA 3QJXA 2A7OA 3B2XA 3FU0A 2Y1GA 3B7SA 4FCAA 4XN2A 4XN8A 4XMXA 4ZX5A 4OOEA 1S46A 3FUKA 2XQ0A 4GAEA 3FUNA 4RSYA 5DLLA 4AR9A 4MS6A 3RC3A 4BKXA 1SC5A 3ANNA 3AU9A 3ANLA 1GW6A 2DQ6A 3Q44A 2VLAA 3A14A 3FTWA 4ZQTA 3WQRA 2R72A 3B2PA 3CIAA 5JNLA 4ZW7A 4MKTA 4XN4A 4PVBA 4R5TA 4XO3A 1ONPA 3B37A 4QHPA 3R0IA 3ANMA 2R70A 4XMUA 4GAAA 4Q4IA 2WZGA 3CZLA 4KP7A 3B7TA 3U9WA 5JC1A 1K5HA 4ZQEA 3FTSA 2QVWA 3T0YA 1RP3A 5HNHA 2PGGA 1X3ZA 2Y1CA 4ZQFA 4ZW8A 4ARFA 2JCVA 4XO4A 2R59A 1Q0QA 2WZFA 3T8VA 5HNFA 1MW1A 1MW2A 3FUJA 5JAZA 2EGHA 4XNBA 1ZS2A 3FUIA 2JD1A 3FUDA 4RVBA 5BPPA 1MW0A 4Y6RA 3B3BA 2C5ZA 1MVYA 2WPGA 3FTVA 4NQWA 3PUUA 4XN5A 4K5NA 4XN1A 4XNDA 3RASA 4Y67A 1ONOA 3UCQA 3B7UX 4FLQA 5DYFA 3WQQA 5JBIA 3FULA 3FUFA 3AUAA 3ZHYA 2MAOA 4XO5A 2O7GA 3CZKA 4XNAA 2JD0A 3Q43A 3HW2A 4AICA 4ZN6A 2HPTA 2MAPA 2B61A 5JMPA 1JVSA 3B7RL 3UEQA 3ZI0A 4A03A 3FTXA 1R0KA 4K5LA 4R5VA 3FUMA 4ZQHA 4XMWA 3VVMA 3CHQA 4DPRA 2JV7A 1JGIA 1SQMA 3B34A 1ONNA 1T1SA 1X3WA 3FTZA 4XMVA 3CHOA 4FLOA 3EBIA 3FU5A 2XPYA 3AU8A 3FH7A 2C82A 1T1RA 3FU3A 3FTYA 4ZX6A 1G5AA 2Y1FA 1HS6A 2JCYA 3CHPA 2JCXA 4K5PA 2VJ8A 1SG7A 4J3BA 4XMZA 5JMWA 5HLTA 3CHRA 4AR8A 1Q0LA 3FHEA 1MW3A 4JNDA 4AYSA 3CXBA 5JO0A 2RJIA 4ZW3A 4L2LA 3RC8A 3EBGA 4QPEA 5EV7A 3FTUA 3FU6A 4ZQGA 4AR1A 2DQMA 3FUEA 1H3LA 1OR7A 1Q0HA 4QIRA 5FWQA 3ZHZA 2PL5A 4FLSA 4Y6SA 4ZX3A 4QUOA 4PU2A 3A06A 3VVLA 4OOFA 4XN9A 4XMTA 2FFLA 3FH8A 4ZW5A 4ZX4A 4R7LA 2ZXGA 4R5XA
chains in the Genus database with same CATH topology
3FH5A 4ZW6A 3FUHA 4PW4A 3CZGA 2JD2A 4Q4EA 5AENA 3KEDA 3WQSB 2Y1DA 2QJ1A 4RCVA 3JT1A 3CZEA 3ZHXA 3JSZA 4Y6PA 3UERA 1R0LA 2PUSA 4FLRA 4K5OA 4X2UA 3EBHA 5DULA 2Y1EA 4K5MA 2GTQA 2XPZA 4QMEA 4XN7A 3IIEA 4CXFA 4LUPA 1H19A 1JG9A 2HPOA 3CHSA 3QJXA 2A7OA 3B2XA 3FU0A 2Y1GA 3B7SA 4FCAA 4XN2A 4XN8A 4XMXA 4ZX5A 4OOEA 1S46A 3FUKA 2XQ0A 4GAEA 3FUNA 4RSYA 5DLLA 4AR9A 4MS6A 3RC3A 4BKXA 1SC5A 3ANNA 3AU9A 3ANLA 1GW6A 2DQ6A 3Q44A 2VLAA 3A14A 3FTWA 4ZQTA 3WQRA 2R72A 3B2PA 3CIAA 5JNLA 4ZW7A 4MKTA 4XN4A 4PVBA 4R5TA 4XO3A 1ONPA 3B37A 4QHPA 3R0IA 3ANMA 2R70A 4XMUA 4GAAA 4Q4IA 2WZGA 3CZLA 4KP7A 3B7TA 3U9WA 5JC1A 1K5HA 4ZQEA 3FTSA 2QVWA 3T0YA 1RP3A 5HNHA 2PGGA 1X3ZA 2Y1CA 4ZQFA 4ZW8A 4ARFA 2JCVA 4XO4A 2R59A 1Q0QA 2WZFA 3T8VA 5HNFA 1MW1A 1MW2A 3FUJA 5JAZA 2EGHA 4XNBA 1ZS2A 3FUIA 2JD1A 3FUDA 4RVBA 5BPPA 1MW0A 4Y6RA 3B3BA 2C5ZA 1MVYA 2WPGA 3FTVA 4NQWA 3PUUA 4XN5A 4K5NA 4XN1A 4XNDA 3RASA 4Y67A 1ONOA 3UCQA 3B7UX 4FLQA 5DYFA 3WQQA 5JBIA 3FULA 3FUFA 3AUAA 3ZHYA 2MAOA 4XO5A 2O7GA 3CZKA 4XNAA 2JD0A 3Q43A 4AICA 4ZN6A 2HPTA 2MAPA 2B61A 5JMPA 1JVSA 3B7RL 3UEQA 3ZI0A 4A03A 3FTXA 1R0KA 4K5LA 4R5VA 3FUMA 4ZQHA 4XMWA 3VVMA 3CHQA 4DPRA 2JV7A 1JGIA 1SQMA 3B34A 1ONNA 1T1SA 1X3WA 3FTZA 4XMVA 3CHOA 4FLOA 3EBIA 3FU5A 2XPYA 3AU8A 3FH7A 2C82A 1T1RA 3FU3A 3FTYA 4ZX6A 1G5AA 2Y1FA 1HS6A 2JCYA 3CHPA 2JCXA 4K5PA 2VJ8A 1SG7A 4J3BA 4XMZA 5JMWA 5HLTA 3CHRA 4AR8A 1Q0LA 3FHEA 1MW3A 4JNDA 4AYSA 5JO0A 2RJIA 4ZW3A 4L2LA 3RC8A 3EBGA 4QPEA 5EV7A 3FTUA 3FU6A 4ZQGA 4AR1A 2DQMA 3FUEA 1H3LA 1OR7A 1Q0HA 4QIRA 5FWQA 3ZHZA 2PL5A 4FLSA 4Y6SA 4ZX3A 4QUOA 4PU2A 3A06A 3VVLA 4OOFA 4XN9A 4XMTA 2FFLA 3FH8A 4ZW5A 4ZX4A 4R7LA 2ZXGA 4R5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JV7 A; 
#chains in the Genus database with same CATH topology
 3FH5 A;  4ZW6 A;  3FUH A;  4PW4 A;  3CZG A;  2JD2 A;  4Q4E A;  5AEN A;  3KED A;  3WQS B;  2Y1D A;  2QJ1 A;  4RCV A;  3JT1 A;  3CZE A;  3ZHX A;  3JSZ A;  4Y6P A;  3UER A;  1R0L A;  2PUS A;  4FLR A;  4K5O A;  4X2U A;  3EBH A;  5DUL A;  2Y1E A;  4K5M A;  2GTQ A;  2XPZ A;  4QME A;  4XN7 A;  3IIE A;  4CXF A;  4LUP A;  1H19 A;  1JG9 A;  2HPO A;  3CHS A;  3QJX A;  2A7O A;  3B2X A;  3FU0 A;  2Y1G A;  3B7S A;  4FCA A;  4XN2 A;  4XN8 A;  4XMX A;  4ZX5 A;  4OOE A;  1S46 A;  3FUK A;  2XQ0 A;  4GAE A;  3FUN A;  4RSY A;  5DLL A;  4AR9 A;  4MS6 A;  3RC3 A;  4BKX A;  1SC5 A;  3ANN A;  3AU9 A;  3ANL A;  1GW6 A;  2DQ6 A;  3Q44 A;  2VLA A;  3A14 A;  3FTW A;  4ZQT A;  3WQR A;  2R72 A;  3B2P A;  3CIA A;  5JNL A;  4ZW7 A;  4MKT A;  4XN4 A;  4PVB A;  4R5T A;  4XO3 A;  1ONP A;  3B37 A;  4QHP A;  3R0I A;  3ANM A;  2R70 A;  4XMU A;  4GAA A;  4Q4I A;  2WZG A;  3CZL A;  4KP7 A;  3B7T A;  3U9W A;  5JC1 A;  1K5H A;  4ZQE A;  3FTS A;  2QVW A;  3T0Y A;  1RP3 A;  5HNH A;  2PGG A;  1X3Z A;  2Y1C A;  4ZQF A;  4ZW8 A;  4ARF A;  2JCV A;  4XO4 A;  2R59 A;  1Q0Q A;  2WZF A;  3T8V A;  5HNF A;  1MW1 A;  1MW2 A;  3FUJ A;  5JAZ A;  2EGH A;  4XNB A;  1ZS2 A;  3FUI A;  2JD1 A;  3FUD A;  4RVB A;  5BPP A;  1MW0 A;  4Y6R A;  3B3B A;  2C5Z A;  1MVY A;  2WPG A;  3FTV A;  4NQW A;  3PUU A;  4XN5 A;  4K5N A;  4XN1 A;  4XND A;  3RAS A;  4Y67 A;  1ONO A;  3UCQ A;  3B7U X;  4FLQ A;  5DYF A;  3WQQ A;  5JBI A;  3FUL A;  3FUF A;  3AUA A;  3ZHY A;  2MAO A;  4XO5 A;  2O7G A;  3CZK A;  4XNA A;  2JD0 A;  3Q43 A;  3HW2 A;  4AIC A;  4ZN6 A;  2HPT A;  2MAP A;  2B61 A;  5JMP A;  1JVS A;  3B7R L;  3UEQ A;  3ZI0 A;  4A03 A;  3FTX A;  1R0K A;  4K5L A;  4R5V A;  3FUM A;  4ZQH A;  4XMW A;  3VVM A;  3CHQ A;  4DPR A;  2JV7 A;  1JGI A;  1SQM A;  3B34 A;  1ONN A;  1T1S A;  1X3W A;  3FTZ A;  4XMV A;  3CHO A;  4FLO A;  3EBI A;  3FU5 A;  2XPY A;  3AU8 A;  3FH7 A;  2C82 A;  1T1R A;  3FU3 A;  3FTY A;  4ZX6 A;  1G5A A;  2Y1F A;  1HS6 A;  2JCY A;  3CHP A;  2JCX A;  4K5P A;  2VJ8 A;  1SG7 A;  4J3B A;  4XMZ A;  5JMW A;  5HLT A;  3CHR A;  4AR8 A;  1Q0L A;  3FHE A;  1MW3 A;  4JND A;  4AYS A;  3CXB A;  5JO0 A;  2RJI A;  4ZW3 A;  4L2L A;  3RC8 A;  3EBG A;  4QPE A;  5EV7 A;  3FTU A;  3FU6 A;  4ZQG A;  4AR1 A;  2DQM A;  3FUE A;  1H3L A;  1OR7 A;  1Q0H A;  4QIR A;  5FWQ A;  3ZHZ A;  2PL5 A;  4FLS A;  4Y6S A;  4ZX3 A;  4QUO A;  4PU2 A;  3A06 A;  3VVL A;  4OOF A;  4XN9 A;  4XMT A;  2FFL A;  3FH8 A;  4ZW5 A;  4ZX4 A;  4R7L A;  2ZXG A;  4R5X A; 
#chains in the Genus database with same CATH homology
 3FH5 A;  4ZW6 A;  3FUH A;  4PW4 A;  3CZG A;  2JD2 A;  4Q4E A;  5AEN A;  3KED A;  3WQS B;  2Y1D A;  2QJ1 A;  4RCV A;  3JT1 A;  3CZE A;  3ZHX A;  3JSZ A;  4Y6P A;  3UER A;  1R0L A;  2PUS A;  4FLR A;  4K5O A;  4X2U A;  3EBH A;  5DUL A;  2Y1E A;  4K5M A;  2GTQ A;  2XPZ A;  4QME A;  4XN7 A;  3IIE A;  4CXF A;  4LUP A;  1H19 A;  1JG9 A;  2HPO A;  3CHS A;  3QJX A;  2A7O A;  3B2X A;  3FU0 A;  2Y1G A;  3B7S A;  4FCA A;  4XN2 A;  4XN8 A;  4XMX A;  4ZX5 A;  4OOE A;  1S46 A;  3FUK A;  2XQ0 A;  4GAE A;  3FUN A;  4RSY A;  5DLL A;  4AR9 A;  4MS6 A;  3RC3 A;  4BKX A;  1SC5 A;  3ANN A;  3AU9 A;  3ANL A;  1GW6 A;  2DQ6 A;  3Q44 A;  2VLA A;  3A14 A;  3FTW A;  4ZQT A;  3WQR A;  2R72 A;  3B2P A;  3CIA A;  5JNL A;  4ZW7 A;  4MKT A;  4XN4 A;  4PVB A;  4R5T A;  4XO3 A;  1ONP A;  3B37 A;  4QHP A;  3R0I A;  3ANM A;  2R70 A;  4XMU A;  4GAA A;  4Q4I A;  2WZG A;  3CZL A;  4KP7 A;  3B7T A;  3U9W A;  5JC1 A;  1K5H A;  4ZQE A;  3FTS A;  2QVW A;  3T0Y A;  1RP3 A;  5HNH A;  2PGG A;  1X3Z A;  2Y1C A;  4ZQF A;  4ZW8 A;  4ARF A;  2JCV A;  4XO4 A;  2R59 A;  1Q0Q A;  2WZF A;  3T8V A;  5HNF A;  1MW1 A;  1MW2 A;  3FUJ A;  5JAZ A;  2EGH A;  4XNB A;  1ZS2 A;  3FUI A;  2JD1 A;  3FUD A;  4RVB A;  5BPP A;  1MW0 A;  4Y6R A;  3B3B A;  2C5Z A;  1MVY A;  2WPG A;  3FTV A;  4NQW A;  3PUU A;  4XN5 A;  4K5N A;  4XN1 A;  4XND A;  3RAS A;  4Y67 A;  1ONO A;  3UCQ A;  3B7U X;  4FLQ A;  5DYF A;  3WQQ A;  5JBI A;  3FUL A;  3FUF A;  3AUA A;  3ZHY A;  2MAO A;  4XO5 A;  2O7G A;  3CZK A;  4XNA A;  2JD0 A;  3Q43 A;  4AIC A;  4ZN6 A;  2HPT A;  2MAP A;  2B61 A;  5JMP A;  1JVS A;  3B7R L;  3UEQ A;  3ZI0 A;  4A03 A;  3FTX A;  1R0K A;  4K5L A;  4R5V A;  3FUM A;  4ZQH A;  4XMW A;  3VVM A;  3CHQ A;  4DPR A;  2JV7 A;  1JGI A;  1SQM A;  3B34 A;  1ONN A;  1T1S A;  1X3W A;  3FTZ A;  4XMV A;  3CHO A;  4FLO A;  3EBI A;  3FU5 A;  2XPY A;  3AU8 A;  3FH7 A;  2C82 A;  1T1R A;  3FU3 A;  3FTY A;  4ZX6 A;  1G5A A;  2Y1F A;  1HS6 A;  2JCY A;  3CHP A;  2JCX A;  4K5P A;  2VJ8 A;  1SG7 A;  4J3B A;  4XMZ A;  5JMW A;  5HLT A;  3CHR A;  4AR8 A;  1Q0L A;  3FHE A;  1MW3 A;  4JND A;  4AYS A;  5JO0 A;  2RJI A;  4ZW3 A;  4L2L A;  3RC8 A;  3EBG A;  4QPE A;  5EV7 A;  3FTU A;  3FU6 A;  4ZQG A;  4AR1 A;  2DQM A;  3FUE A;  1H3L A;  1OR7 A;  1Q0H A;  4QIR A;  5FWQ A;  3ZHZ A;  2PL5 A;  4FLS A;  4Y6S A;  4ZX3 A;  4QUO A;  4PU2 A;  3A06 A;  3VVL A;  4OOF A;  4XN9 A;  4XMT A;  2FFL A;  3FH8 A;  4ZW5 A;  4ZX4 A;  4R7L A;  2ZXG A;  4R5X A; 
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