2MAO | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	106
structure length	106
Chain Sequence	MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRLELVPRGSHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Escherichia coli
publication title	Structural basis for -10 promoter element melting by environmentally induced sigma factors. pubmed doi rcsb
molecule keywords	RNA polymerase sigma factor
total genus	27
structure length	106
sequence length	106
ec nomenclature
pdb deposition date	2013-07-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1740.10	Mainly Alpha	Orthogonal Bundle	Rna Polymerase Sigma Factor; Chain: A	Rna Polymerase Sigma Factor; Chain: A	2maoA00

4LUPA 1ZS2A 4RCVA 4AICA 1JG9A 3CZLA 4ZQGA 2JCXA 2Y1EA 4FLOA 1MW1A 3ZI0A 3RASA 2JD0A 1Q0HA 4CXFA 2MAOA 3IIEA 3UCQA 2JD1A 4OOFA 3ZHZA 2MAPA 3A06A 2JCVA 5JMPA 3CZEA 1SC5A 2EGHA 2Y1CA 5DULA 3WQQA 3AU9A 2Y1GA 3ANNA 3WQRA 1MW3A 1T1SA 2O7GA 4AYSA 3ANMA 4Y6RA 1ONPA 1T1RA 2Y1FA 3CZKA 1RP3A 2Y1DA 2WPGA 1H3LA 1OR7A 1JVSA 3WQSB 3AUAA 3T0YA 3UEQA 4Y6SA 1Q0LA 3ZHYA 3R0IA 4GAEA 1MW2A 1G5AA 3AU8A 4ZQFA 1JGIA 3ZHXA 4NQWA 4ZQHA 5JNLA 4Y6PA 3UERA 4Y67A 3CZGA 1ONOA 4ZN6A 1R0KA 5JMWA 1S46A 1R0LA 4FLSA 4OOEA 4FLQA 2C82A 4FLRA 4A03A 5JO0A 1Q0QA 4ZQEA 5JC1A 4KP7A 5JBIA 1K5HA 1MVYA 1ONNA 3ANLA 5JAZA 3A14A 1MW0A 2JD2A 2JCYA
chains in the Genus database with same CATH superfamily

4XMXA 4PW4A 3T8VA 3U9WA 3B7TA 1ZS2A 4XN7A 4LUPA 2HPTA 4AR8A 4RCVA 4AICA 3CHPA 5FWQA 4XMWA 3B2PA 1JG9A 2XPYA 3CZLA 5EV7A 4XN4A 4ZQGA 1HS6A 2JCXA 2Y1EA 2QJ1A 4FLOA 4XO5A 1MW1A 4XMVA 3B34A 3B7SA 3ZI0A 4XN9A 3RASA 2JD0A 3B7UX 4R7LA 4XN2A 1Q0HA 2ZXGA 2A7OA 5HLTA 4JNDA 4FCAA 2PL5A 4XNBA 5DYFA 5BPPA 4ZQTA 4CXFA 2MAOA 3IIEA 3UCQA 3HW2A 4GAAA 2JD1A 4OOFA 3ZHZA 4XNAA 2DQMA 2WZGA 2MAPA 3B37A 3CHSA 2PUSA 1X3ZA 3FULA 3A06A 4BKXA 2JCVA 3PUUA 5JMPA 3CZEA 2C5ZA 3JSZA 4ARFA 2XQ0A 1SC5A 4R5TA 4XN5A 2FFLA 3Q43A 3FUFA 2EGHA 5HNFA 2Y1CA 5DULA 3KEDA 3WQQA 3AU9A 4QHPA 2Y1GA 2XPZA 3FTUA 3ANNA 3FU0A 2RJIA 3FUHA 4K5NA 3WQRA 3EBIA 4RSYA 1MW3A 4AR9A 1T1SA 3CHQA 2O7GA 3EBHA 4QUOA 4AYSA 1SQMA 3ANMA 4Y6RA 2R70A 3JT1A 4XMUA 3FUNA 4PU2A 3FH7A 3FUMA 4R5XA 3FUIA 1ONPA 3B2XA 4AR1A 4DPRA 1T1RA 3VVMA 2Y1FA 4XN1A 4PVBA 3CZKA 3FTWA 1RP3A 2Y1DA 5AENA 3B7RL 2GTQA 2JV7A 2WPGA 4K5LA 2HPOA 4XNDA 3FTXA 4RVBA 1H3LA 1OR7A 1JVSA 3WQSB 4K5OA 3AUAA 3T0YA 3UEQA 4Y6SA 1Q0LA 4K5PA 3FH5A 3ZHYA 3RC3A 3R0IA 4K5MA 4J3BA 4GAEA 3CHOA 2R59A 4XMTA 1MW2A 4R5VA 2VJ8A 2B61A 1G5AA 3FUKA 4MS6A 3AU8A 4QMEA 1JGIA 4ZQFA 3ZHXA 4NQWA 3FTSA 4ZQHA 4MKTA 4ZX6A 5JNLA 4QPEA 4Y6PA 4X2UA 4Y67A 3UERA 4ZX4A 3CZGA 1ONOA 1GW6A 1X3WA 4ZN6A 2DQ6A 3CXBA 3VVLA 2PGGA 3CIAA 3FU3A 3RC8A 3FUJA 4ZW6A 1R0KA 3FTYA 5JMWA 4ZW5A 1H19A 1S46A 4XO4A 1R0LA 3QJXA 4FLSA 3FHEA 4ZX5A 3CHRA 4ZX3A 4QIRA 4OOEA 4FLQA 4L2LA 5DLLA 2R72A 3EBGA 3FUEA 4ZW8A 2C82A 2VLAA 4FLRA 3Q44A 4XN8A 1SG7A 4A03A 5JO0A 1Q0QA 4ZQEA 3FTZA 3FTVA 4ZW7A 3FU5A 3FUDA 5JC1A 2WZFA 4KP7A 4XMZA 5JBIA 2QVWA 3B3BA 4ZW3A 5HNHA 3FU6A 1K5HA 1MVYA 1ONNA 4Q4IA 3ANLA 5JAZA 3A14A 3FH8A 4XO3A 1MW0A 4Q4EA 2JD2A 2JCYA
chains in the Genus database with same CATH topology

4XMXA 4PW4A 3T8VA 3U9WA 3B7TA 1ZS2A 4XN7A 4LUPA 2HPTA 4AR8A 4RCVA 4AICA 3CHPA 5FWQA 4XMWA 3B2PA 1JG9A 2XPYA 3CZLA 5EV7A 4XN4A 4ZQGA 1HS6A 2JCXA 2Y1EA 2QJ1A 4FLOA 4XO5A 1MW1A 4XMVA 3B34A 3B7SA 3ZI0A 4XN9A 3RASA 2JD0A 3B7UX 4R7LA 4XN2A 1Q0HA 2ZXGA 2A7OA 5HLTA 4JNDA 4FCAA 2PL5A 4XNBA 5DYFA 5BPPA 4ZQTA 4CXFA 2MAOA 3IIEA 3UCQA 4GAAA 2JD1A 4OOFA 3ZHZA 4XNAA 2DQMA 2WZGA 2MAPA 3B37A 3CHSA 2PUSA 1X3ZA 3FULA 3A06A 4BKXA 2JCVA 3PUUA 5JMPA 3CZEA 2C5ZA 3JSZA 4ARFA 2XQ0A 1SC5A 4R5TA 4XN5A 2FFLA 3Q43A 3FUFA 2EGHA 5HNFA 2Y1CA 5DULA 3KEDA 3WQQA 3AU9A 4QHPA 2Y1GA 2XPZA 3FTUA 3ANNA 3FU0A 2RJIA 3FUHA 4K5NA 3WQRA 3EBIA 4RSYA 1MW3A 4AR9A 1T1SA 3CHQA 2O7GA 3EBHA 4QUOA 4AYSA 1SQMA 3ANMA 4Y6RA 2R70A 3JT1A 4XMUA 3FUNA 4PU2A 3FH7A 3FUMA 4R5XA 3FUIA 1ONPA 3B2XA 4AR1A 4DPRA 1T1RA 3VVMA 2Y1FA 4XN1A 4PVBA 3CZKA 3FTWA 1RP3A 2Y1DA 5AENA 3B7RL 2GTQA 2JV7A 2WPGA 4K5LA 2HPOA 4XNDA 3FTXA 4RVBA 1H3LA 1OR7A 1JVSA 3WQSB 4K5OA 3AUAA 3T0YA 3UEQA 4Y6SA 1Q0LA 4K5PA 3FH5A 3ZHYA 3RC3A 3R0IA 4K5MA 4J3BA 4GAEA 3CHOA 2R59A 4XMTA 1MW2A 4R5VA 2VJ8A 2B61A 1G5AA 3FUKA 4MS6A 3AU8A 4QMEA 1JGIA 4ZQFA 3ZHXA 4NQWA 3FTSA 4ZQHA 4MKTA 4ZX6A 5JNLA 4QPEA 4Y6PA 4X2UA 4Y67A 3UERA 4ZX4A 3CZGA 1ONOA 1GW6A 1X3WA 4ZN6A 2DQ6A 3VVLA 2PGGA 3CIAA 3FU3A 3RC8A 3FUJA 4ZW6A 1R0KA 3FTYA 5JMWA 4ZW5A 1H19A 1S46A 4XO4A 1R0LA 3QJXA 4FLSA 3FHEA 4ZX5A 3CHRA 4ZX3A 4QIRA 4OOEA 4FLQA 4L2LA 5DLLA 2R72A 3EBGA 3FUEA 4ZW8A 2C82A 2VLAA 4FLRA 3Q44A 4XN8A 1SG7A 4A03A 5JO0A 1Q0QA 4ZQEA 3FTZA 3FTVA 4ZW7A 3FU5A 3FUDA 5JC1A 2WZFA 4KP7A 4XMZA 5JBIA 2QVWA 3B3BA 4ZW3A 5HNHA 3FU6A 1K5HA 1MVYA 1ONNA 4Q4IA 3ANLA 5JAZA 3A14A 3FH8A 4XO3A 1MW0A 4Q4EA 2JD2A 2JCYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LUP A;  1ZS2 A;  4RCV A;  4AIC A;  1JG9 A;  3CZL A;  4ZQG A;  2JCX A;  2Y1E A;  4FLO A;  1MW1 A;  3ZI0 A;  3RAS A;  2JD0 A;  1Q0H A;  4CXF A;  2MAO A;  3IIE A;  3UCQ A;  2JD1 A;  4OOF A;  3ZHZ A;  2MAP A;  3A06 A;  2JCV A;  5JMP A;  3CZE A;  1SC5 A;  2EGH A;  2Y1C A;  5DUL A;  3WQQ A;  3AU9 A;  2Y1G A;  3ANN A;  3WQR A;  1MW3 A;  1T1S A;  2O7G A;  4AYS A;  3ANM A;  4Y6R A;  1ONP A;  1T1R A;  2Y1F A;  3CZK A;  1RP3 A;  2Y1D A;  2WPG A;  1H3L A;  1OR7 A;  1JVS A;  3WQS B;  3AUA A;  3T0Y A;  3UEQ A;  4Y6S A;  1Q0L A;  3ZHY A;  3R0I A;  4GAE A;  1MW2 A;  1G5A A;  3AU8 A;  4ZQF A;  1JGI A;  3ZHX A;  4NQW A;  4ZQH A;  5JNL A;  4Y6P A;  3UER A;  4Y67 A;  3CZG A;  1ONO A;  4ZN6 A;  1R0K A;  5JMW A;  1S46 A;  1R0L A;  4FLS A;  4OOE A;  4FLQ A;  2C82 A;  4FLR A;  4A03 A;  5JO0 A;  1Q0Q A;  4ZQE A;  5JC1 A;  4KP7 A;  5JBI A;  1K5H A;  1MVY A;  1ONN A;  3ANL A;  5JAZ A;  3A14 A;  1MW0 A;  2JD2 A;  2JCY A; 
#chains in the Genus database with same CATH topology
 4XMX A;  4PW4 A;  3T8V A;  3U9W A;  3B7T A;  1ZS2 A;  4XN7 A;  4LUP A;  2HPT A;  4AR8 A;  4RCV A;  4AIC A;  3CHP A;  5FWQ A;  4XMW A;  3B2P A;  1JG9 A;  2XPY A;  3CZL A;  5EV7 A;  4XN4 A;  4ZQG A;  1HS6 A;  2JCX A;  2Y1E A;  2QJ1 A;  4FLO A;  4XO5 A;  1MW1 A;  4XMV A;  3B34 A;  3B7S A;  3ZI0 A;  4XN9 A;  3RAS A;  2JD0 A;  3B7U X;  4R7L A;  4XN2 A;  1Q0H A;  2ZXG A;  2A7O A;  5HLT A;  4JND A;  4FCA A;  2PL5 A;  4XNB A;  5DYF A;  5BPP A;  4ZQT A;  4CXF A;  2MAO A;  3IIE A;  3UCQ A;  3HW2 A;  4GAA A;  2JD1 A;  4OOF A;  3ZHZ A;  4XNA A;  2DQM A;  2WZG A;  2MAP A;  3B37 A;  3CHS A;  2PUS A;  1X3Z A;  3FUL A;  3A06 A;  4BKX A;  2JCV A;  3PUU A;  5JMP A;  3CZE A;  2C5Z A;  3JSZ A;  4ARF A;  2XQ0 A;  1SC5 A;  4R5T A;  4XN5 A;  2FFL A;  3Q43 A;  3FUF A;  2EGH A;  5HNF A;  2Y1C A;  5DUL A;  3KED A;  3WQQ A;  3AU9 A;  4QHP A;  2Y1G A;  2XPZ A;  3FTU A;  3ANN A;  3FU0 A;  2RJI A;  3FUH A;  4K5N A;  3WQR A;  3EBI A;  4RSY A;  1MW3 A;  4AR9 A;  1T1S A;  3CHQ A;  2O7G A;  3EBH A;  4QUO A;  4AYS A;  1SQM A;  3ANM A;  4Y6R A;  2R70 A;  3JT1 A;  4XMU A;  3FUN A;  4PU2 A;  3FH7 A;  3FUM A;  4R5X A;  3FUI A;  1ONP A;  3B2X A;  4AR1 A;  4DPR A;  1T1R A;  3VVM A;  2Y1F A;  4XN1 A;  4PVB A;  3CZK A;  3FTW A;  1RP3 A;  2Y1D A;  5AEN A;  3B7R L;  2GTQ A;  2JV7 A;  2WPG A;  4K5L A;  2HPO A;  4XND A;  3FTX A;  4RVB A;  1H3L A;  1OR7 A;  1JVS A;  3WQS B;  4K5O A;  3AUA A;  3T0Y A;  3UEQ A;  4Y6S A;  1Q0L A;  4K5P A;  3FH5 A;  3ZHY A;  3RC3 A;  3R0I A;  4K5M A;  4J3B A;  4GAE A;  3CHO A;  2R59 A;  4XMT A;  1MW2 A;  4R5V A;  2VJ8 A;  2B61 A;  1G5A A;  3FUK A;  4MS6 A;  3AU8 A;  4QME A;  1JGI A;  4ZQF A;  3ZHX A;  4NQW A;  3FTS A;  4ZQH A;  4MKT A;  4ZX6 A;  5JNL A;  4QPE A;  4Y6P A;  4X2U A;  4Y67 A;  3UER A;  4ZX4 A;  3CZG A;  1ONO A;  1GW6 A;  1X3W A;  4ZN6 A;  2DQ6 A;  3CXB A;  3VVL A;  2PGG A;  3CIA A;  3FU3 A;  3RC8 A;  3FUJ A;  4ZW6 A;  1R0K A;  3FTY A;  5JMW A;  4ZW5 A;  1H19 A;  1S46 A;  4XO4 A;  1R0L A;  3QJX A;  4FLS A;  3FHE A;  4ZX5 A;  3CHR A;  4ZX3 A;  4QIR A;  4OOE A;  4FLQ A;  4L2L A;  5DLL A;  2R72 A;  3EBG A;  3FUE A;  4ZW8 A;  2C82 A;  2VLA A;  4FLR A;  3Q44 A;  4XN8 A;  1SG7 A;  4A03 A;  5JO0 A;  1Q0Q A;  4ZQE A;  3FTZ A;  3FTV A;  4ZW7 A;  3FU5 A;  3FUD A;  5JC1 A;  2WZF A;  4KP7 A;  4XMZ A;  5JBI A;  2QVW A;  3B3B A;  4ZW3 A;  5HNH A;  3FU6 A;  1K5H A;  1MVY A;  1ONN A;  4Q4I A;  3ANL A;  5JAZ A;  3A14 A;  3FH8 A;  4XO3 A;  1MW0 A;  4Q4E A;  2JD2 A;  2JCY A; 
#chains in the Genus database with same CATH homology
 4XMX A;  4PW4 A;  3T8V A;  3U9W A;  3B7T A;  1ZS2 A;  4XN7 A;  4LUP A;  2HPT A;  4AR8 A;  4RCV A;  4AIC A;  3CHP A;  5FWQ A;  4XMW A;  3B2P A;  1JG9 A;  2XPY A;  3CZL A;  5EV7 A;  4XN4 A;  4ZQG A;  1HS6 A;  2JCX A;  2Y1E A;  2QJ1 A;  4FLO A;  4XO5 A;  1MW1 A;  4XMV A;  3B34 A;  3B7S A;  3ZI0 A;  4XN9 A;  3RAS A;  2JD0 A;  3B7U X;  4R7L A;  4XN2 A;  1Q0H A;  2ZXG A;  2A7O A;  5HLT A;  4JND A;  4FCA A;  2PL5 A;  4XNB A;  5DYF A;  5BPP A;  4ZQT A;  4CXF A;  2MAO A;  3IIE A;  3UCQ A;  4GAA A;  2JD1 A;  4OOF A;  3ZHZ A;  4XNA A;  2DQM A;  2WZG A;  2MAP A;  3B37 A;  3CHS A;  2PUS A;  1X3Z A;  3FUL A;  3A06 A;  4BKX A;  2JCV A;  3PUU A;  5JMP A;  3CZE A;  2C5Z A;  3JSZ A;  4ARF A;  2XQ0 A;  1SC5 A;  4R5T A;  4XN5 A;  2FFL A;  3Q43 A;  3FUF A;  2EGH A;  5HNF A;  2Y1C A;  5DUL A;  3KED A;  3WQQ A;  3AU9 A;  4QHP A;  2Y1G A;  2XPZ A;  3FTU A;  3ANN A;  3FU0 A;  2RJI A;  3FUH A;  4K5N A;  3WQR A;  3EBI A;  4RSY A;  1MW3 A;  4AR9 A;  1T1S A;  3CHQ A;  2O7G A;  3EBH A;  4QUO A;  4AYS A;  1SQM A;  3ANM A;  4Y6R A;  2R70 A;  3JT1 A;  4XMU A;  3FUN A;  4PU2 A;  3FH7 A;  3FUM A;  4R5X A;  3FUI A;  1ONP A;  3B2X A;  4AR1 A;  4DPR A;  1T1R A;  3VVM A;  2Y1F A;  4XN1 A;  4PVB A;  3CZK A;  3FTW A;  1RP3 A;  2Y1D A;  5AEN A;  3B7R L;  2GTQ A;  2JV7 A;  2WPG A;  4K5L A;  2HPO A;  4XND A;  3FTX A;  4RVB A;  1H3L A;  1OR7 A;  1JVS A;  3WQS B;  4K5O A;  3AUA A;  3T0Y A;  3UEQ A;  4Y6S A;  1Q0L A;  4K5P A;  3FH5 A;  3ZHY A;  3RC3 A;  3R0I A;  4K5M A;  4J3B A;  4GAE A;  3CHO A;  2R59 A;  4XMT A;  1MW2 A;  4R5V A;  2VJ8 A;  2B61 A;  1G5A A;  3FUK A;  4MS6 A;  3AU8 A;  4QME A;  1JGI A;  4ZQF A;  3ZHX A;  4NQW A;  3FTS A;  4ZQH A;  4MKT A;  4ZX6 A;  5JNL A;  4QPE A;  4Y6P A;  4X2U A;  4Y67 A;  3UER A;  4ZX4 A;  3CZG A;  1ONO A;  1GW6 A;  1X3W A;  4ZN6 A;  2DQ6 A;  3VVL A;  2PGG A;  3CIA A;  3FU3 A;  3RC8 A;  3FUJ A;  4ZW6 A;  1R0K A;  3FTY A;  5JMW A;  4ZW5 A;  1H19 A;  1S46 A;  4XO4 A;  1R0L A;  3QJX A;  4FLS A;  3FHE A;  4ZX5 A;  3CHR A;  4ZX3 A;  4QIR A;  4OOE A;  4FLQ A;  4L2L A;  5DLL A;  2R72 A;  3EBG A;  3FUE A;  4ZW8 A;  2C82 A;  2VLA A;  4FLR A;  3Q44 A;  4XN8 A;  1SG7 A;  4A03 A;  5JO0 A;  1Q0Q A;  4ZQE A;  3FTZ A;  3FTV A;  4ZW7 A;  3FU5 A;  3FUD A;  5JC1 A;  2WZF A;  4KP7 A;  4XMZ A;  5JBI A;  2QVW A;  3B3B A;  4ZW3 A;  5HNH A;  3FU6 A;  1K5H A;  1MVY A;  1ONN A;  4Q4I A;  3ANL A;  5JAZ A;  3A14 A;  3FH8 A;  4XO3 A;  1MW0 A;  4Q4E A;  2JD2 A;  2JCY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2MAOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN