2MAPA

Solution structure of the complex formed by the region 2 of e. coli sigmae and its cognate -10 promoter element non template strand tgtcaaa.
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
96
structure length
96
Chain Sequence
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRLELV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (61-63)AH1 (7-16)AH3 (45-60)TI2 (42-45)EMPTYTIV1 (66-69)AH4 (70-90)TI3 (91-94)AH2 (19-38)TI1 (38-41)Updating...
connected with : NaN
molecule tags Transcription/dna
source organism Escherichia coli
publication title Structural basis for -10 promoter element melting by environmentally induced sigma factors.
pubmed doi rcsb
molecule keywords RNA polymerase sigma factor
total genus 28
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2013-07-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2mapA00
4OOEA 3CZGA 4GAEA 1R0KA 1H3LA 4Y6RA 4Y67A 4Y6PA 3ANNA 4ZQEA 4ZQHA 1T1SA 3RASA 1S46A 2WPGA 2Y1FA 4OOFA 4FLSA 4ZQGA 1Q0HA 5JAZA 2MAPA 1SC5A 2O7GA 3AUAA 3CZKA 3CZLA 3R0IA 1K5HA 1JGIA 1RP3A 3WQRA 5JMWA 1OR7A 2Y1DA 2Y1EA 1Q0QA 1MW1A 1JG9A 3ANMA 4FLQA 1ONPA 3A06A 1MW0A 2JD1A 1ZS2A 3ZHXA 3CZEA 5DULA 4FLRA 1MW2A 3UCQA 3UEQA 2JD2A 1MVYA 2Y1CA 2Y1GA 4RCVA 3WQQA 3IIEA 4Y6SA 3ZHYA 4CXFA 4KP7A 5JO0A 3ZHZA 4ZQFA 1MW3A 1ONNA 5JC1A 1T1RA 4FLOA 3UERA 2JD0A 1Q0LA 5JNLA 3AU8A 2EGHA 4AICA 5JBIA 1R0LA 3A14A 4A03A 3ANLA 4NQWA 3WQSB 1JVSA 2MAOA 2JCXA 4AYSA 2JCYA 3AU9A 2JCVA 3ZI0A 4LUPA 3T0YA 2C82A 1G5AA 4ZN6A 5JMPA 1ONOA
chains in the Genus database with same CATH superfamily
5BPPA 2VJ8A 4ZX5A 3FH5A 4OOEA 3CZGA 4GAEA 4XMXA 1H3LA 1R0KA 3FTUA 4Y6RA 4Y67A 4AR1A 2XPYA 4QPEA 4Y6PA 3ANNA 4J3BA 3CXBA 4ZQEA 3B7UX 4XMWA 1T1SA 3FUFA 4ZQHA 3RASA 3EBGA 1S46A 3FUEA 2WPGA 3FUDA 3FUMA 3FUKA 4GAAA 2Y1FA 3FTXA 4OOFA 4ZW7A 3FU5A 4FLSA 4R5VA 4ZQGA 1Q0HA 4K5LA 2R59A 5JAZA 3KEDA 4PW4A 2MAPA 1SC5A 4RSYA 2WZGA 5DLLA 2XQ0A 2O7GA 3AUAA 4XNDA 3CHSA 3FUIA 3RC8A 3FH8A 4QIRA 4ZX4A 3Q43A 3EBHA 5DYFA 3CZKA 2WZFA 4Q4IA 2FFLA 4K5OA 1SQMA 5EV7A 3CZLA 4XNBA 4R7LA 2VLAA 4ZW6A 3FUJA 3FU3A 1K5HA 3R0IA 4PU2A 4XMTA 1JGIA 4ARFA 4AR9A 1RP3A 4XN7A 3WQRA 1GW6A 2R70A 3T8VA 4ZW3A 4MS6A 5JMWA 3B34A 1X3ZA 3CHOA 1OR7A 2R72A 2Y1EA 2Y1DA 1Q0QA 1MW1A 4Q4EA 4XMZA 1JG9A 3ANMA 4FLQA 2B61A 1HS6A 3FH7A 5HNFA 1ONPA 4AR8A 4XN2A 4XN9A 4ZX3A 3FUHA 3A06A 4ZW5A 4QHPA 1MW0A 2JD1A 1ZS2A 3B2PA 3FTYA 2HPTA 2HPOA 4ZX6A 3CIAA 3JT1A 2C5ZA 2PL5A 3ZHXA 2PGGA 4K5PA 3CZEA 5DULA 4FLRA 1X3WA 2A7OA 1MW2A 2XPZA 3CHRA 4ZQTA 3RC3A 4MKTA 4ZW8A 3HW2A 3UCQA 4QUOA 3UEQA 2JD2A 3B3BA 1MVYA 4X2UA 2Y1CA 3FHEA 2Y1GA 3FULA 4RCVA 4XN5A 3WQQA 2QJ1A 3IIEA 3CHPA 3PUUA 4Y6SA 4PVBA 4XNAA 4XMVA 3ZHYA 4XO3A 4CXFA 4KP7A 4RVBA 4K5MA 5HNHA 4QMEA 3FUNA 3U9WA 5JO0A 3FU0A 1H19A 3ZHZA 3B7TA 4R5TA 4ZQFA 3FTVA 4L2LA 1MW3A 1ONNA 5JC1A 3FTZA 1T1RA 3EBIA 4FLOA 3UERA 4XO4A 4XN8A 2DQ6A 4XMUA 4K5NA 3VVLA 2PUSA 2JD0A 3JSZA 1Q0LA 2QVWA 3AU8A 4FCAA 5FWQA 2EGHA 4JNDA 5JNLA 5AENA 4AICA 5JBIA 1R0LA 3CHQA 3A14A 4A03A 3Q44A 3ANLA 4DPRA 4NQWA 3WQSB 1JVSA 5HLTA 1SG7A 2MAOA 2GTQA 2JCXA 2JCYA 4AYSA 3AU9A 3B2XA 4XO5A 2JCVA 3FTSA 2RJIA 3ZI0A 3VVMA 4LUPA 3T0YA 2C82A 3FTWA 4BKXA 4XN4A 1G5AA 4ZN6A 5JMPA 2ZXGA 4R5XA 3B7RL 3FU6A 4XN1A 3B7SA 3B37A 3QJXA 2JV7A 1ONOA 2DQMA
chains in the Genus database with same CATH topology
5BPPA 2VJ8A 4ZX5A 3FH5A 4OOEA 3CZGA 4GAEA 4XMXA 1H3LA 1R0KA 3FTUA 4Y6RA 4Y67A 4AR1A 2XPYA 4QPEA 4Y6PA 3ANNA 4J3BA 4ZQEA 3B7UX 4XMWA 1T1SA 3FUFA 4ZQHA 3RASA 3EBGA 1S46A 3FUEA 2WPGA 3FUDA 3FUMA 3FUKA 4GAAA 2Y1FA 3FTXA 4OOFA 4ZW7A 3FU5A 4FLSA 4R5VA 4ZQGA 1Q0HA 4K5LA 2R59A 5JAZA 3KEDA 4PW4A 2MAPA 1SC5A 4RSYA 2WZGA 5DLLA 2XQ0A 2O7GA 3AUAA 4XNDA 3CHSA 3FUIA 3RC8A 3FH8A 4QIRA 4ZX4A 3Q43A 3EBHA 5DYFA 3CZKA 2WZFA 4Q4IA 2FFLA 4K5OA 1SQMA 5EV7A 3CZLA 4XNBA 4R7LA 2VLAA 4ZW6A 3FUJA 3FU3A 1K5HA 3R0IA 4PU2A 4XMTA 1JGIA 4ARFA 4AR9A 1RP3A 4XN7A 3WQRA 1GW6A 2R70A 3T8VA 4ZW3A 4MS6A 5JMWA 3B34A 1X3ZA 3CHOA 1OR7A 2R72A 2Y1EA 2Y1DA 1Q0QA 1MW1A 4Q4EA 4XMZA 1JG9A 3ANMA 4FLQA 2B61A 1HS6A 3FH7A 5HNFA 1ONPA 4AR8A 4XN2A 4XN9A 4ZX3A 3FUHA 3A06A 4ZW5A 4QHPA 1MW0A 2JD1A 1ZS2A 3B2PA 3FTYA 2HPTA 2HPOA 4ZX6A 3CIAA 3JT1A 2C5ZA 2PL5A 3ZHXA 2PGGA 4K5PA 3CZEA 5DULA 4FLRA 1X3WA 2A7OA 1MW2A 2XPZA 3CHRA 4ZQTA 3RC3A 4MKTA 4ZW8A 3UCQA 4QUOA 3UEQA 2JD2A 3B3BA 1MVYA 4X2UA 2Y1CA 3FHEA 2Y1GA 3FULA 4RCVA 4XN5A 3WQQA 2QJ1A 3IIEA 3CHPA 3PUUA 4Y6SA 4PVBA 4XNAA 4XMVA 3ZHYA 4XO3A 4CXFA 4KP7A 4RVBA 4K5MA 5HNHA 4QMEA 3FUNA 3U9WA 5JO0A 3FU0A 1H19A 3ZHZA 3B7TA 4R5TA 4ZQFA 3FTVA 4L2LA 1MW3A 1ONNA 5JC1A 3FTZA 1T1RA 3EBIA 4FLOA 3UERA 4XO4A 4XN8A 2DQ6A 4XMUA 4K5NA 3VVLA 2PUSA 2JD0A 3JSZA 1Q0LA 2QVWA 3AU8A 4FCAA 5FWQA 2EGHA 4JNDA 5JNLA 5AENA 4AICA 5JBIA 1R0LA 3CHQA 3A14A 4A03A 3Q44A 3ANLA 4DPRA 4NQWA 3WQSB 1JVSA 5HLTA 1SG7A 2MAOA 2GTQA 2JCXA 2JCYA 4AYSA 3AU9A 3B2XA 4XO5A 2JCVA 3FTSA 2RJIA 3ZI0A 3VVMA 4LUPA 3T0YA 2C82A 3FTWA 4BKXA 4XN4A 1G5AA 4ZN6A 5JMPA 2ZXGA 4R5XA 3B7RL 3FU6A 4XN1A 3B7SA 3B37A 3QJXA 2JV7A 1ONOA 2DQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OOE A;  3CZG A;  4GAE A;  1R0K A;  1H3L A;  4Y6R A;  4Y67 A;  4Y6P A;  3ANN A;  4ZQE A;  4ZQH A;  1T1S A;  3RAS A;  1S46 A;  2WPG A;  2Y1F A;  4OOF A;  4FLS A;  4ZQG A;  1Q0H A;  5JAZ A;  2MAP A;  1SC5 A;  2O7G A;  3AUA A;  3CZK A;  3CZL A;  3R0I A;  1K5H A;  1JGI A;  1RP3 A;  3WQR A;  5JMW A;  1OR7 A;  2Y1D A;  2Y1E A;  1Q0Q A;  1MW1 A;  1JG9 A;  3ANM A;  4FLQ A;  1ONP A;  3A06 A;  1MW0 A;  2JD1 A;  1ZS2 A;  3ZHX A;  3CZE A;  5DUL A;  4FLR A;  1MW2 A;  3UCQ A;  3UEQ A;  2JD2 A;  1MVY A;  2Y1C A;  2Y1G A;  4RCV A;  3WQQ A;  3IIE A;  4Y6S A;  3ZHY A;  4CXF A;  4KP7 A;  5JO0 A;  3ZHZ A;  4ZQF A;  1MW3 A;  1ONN A;  5JC1 A;  1T1R A;  4FLO A;  3UER A;  2JD0 A;  1Q0L A;  5JNL A;  3AU8 A;  2EGH A;  4AIC A;  5JBI A;  1R0L A;  3A14 A;  4A03 A;  3ANL A;  4NQW A;  3WQS B;  1JVS A;  2MAO A;  2JCX A;  4AYS A;  2JCY A;  3AU9 A;  2JCV A;  3ZI0 A;  4LUP A;  3T0Y A;  2C82 A;  1G5A A;  4ZN6 A;  5JMP A;  1ONO A; 
#chains in the Genus database with same CATH topology
 5BPP A;  2VJ8 A;  4ZX5 A;  3FH5 A;  4OOE A;  3CZG A;  4GAE A;  4XMX A;  1H3L A;  1R0K A;  3FTU A;  4Y6R A;  4Y67 A;  4AR1 A;  2XPY A;  4QPE A;  4Y6P A;  3ANN A;  4J3B A;  3CXB A;  4ZQE A;  3B7U X;  4XMW A;  1T1S A;  3FUF A;  4ZQH A;  3RAS A;  3EBG A;  1S46 A;  3FUE A;  2WPG A;  3FUD A;  3FUM A;  3FUK A;  4GAA A;  2Y1F A;  3FTX A;  4OOF A;  4ZW7 A;  3FU5 A;  4FLS A;  4R5V A;  4ZQG A;  1Q0H A;  4K5L A;  2R59 A;  5JAZ A;  3KED A;  4PW4 A;  2MAP A;  1SC5 A;  4RSY A;  2WZG A;  5DLL A;  2XQ0 A;  2O7G A;  3AUA A;  4XND A;  3CHS A;  3FUI A;  3RC8 A;  3FH8 A;  4QIR A;  4ZX4 A;  3Q43 A;  3EBH A;  5DYF A;  3CZK A;  2WZF A;  4Q4I A;  2FFL A;  4K5O A;  1SQM A;  5EV7 A;  3CZL A;  4XNB A;  4R7L A;  2VLA A;  4ZW6 A;  3FUJ A;  3FU3 A;  1K5H A;  3R0I A;  4PU2 A;  4XMT A;  1JGI A;  4ARF A;  4AR9 A;  1RP3 A;  4XN7 A;  3WQR A;  1GW6 A;  2R70 A;  3T8V A;  4ZW3 A;  4MS6 A;  5JMW A;  3B34 A;  1X3Z A;  3CHO A;  1OR7 A;  2R72 A;  2Y1E A;  2Y1D A;  1Q0Q A;  1MW1 A;  4Q4E A;  4XMZ A;  1JG9 A;  3ANM A;  4FLQ A;  2B61 A;  1HS6 A;  3FH7 A;  5HNF A;  1ONP A;  4AR8 A;  4XN2 A;  4XN9 A;  4ZX3 A;  3FUH A;  3A06 A;  4ZW5 A;  4QHP A;  1MW0 A;  2JD1 A;  1ZS2 A;  3B2P A;  3FTY A;  2HPT A;  2HPO A;  4ZX6 A;  3CIA A;  3JT1 A;  2C5Z A;  2PL5 A;  3ZHX A;  2PGG A;  4K5P A;  3CZE A;  5DUL A;  4FLR A;  1X3W A;  2A7O A;  1MW2 A;  2XPZ A;  3CHR A;  4ZQT A;  3RC3 A;  4MKT A;  4ZW8 A;  3HW2 A;  3UCQ A;  4QUO A;  3UEQ A;  2JD2 A;  3B3B A;  1MVY A;  4X2U A;  2Y1C A;  3FHE A;  2Y1G A;  3FUL A;  4RCV A;  4XN5 A;  3WQQ A;  2QJ1 A;  3IIE A;  3CHP A;  3PUU A;  4Y6S A;  4PVB A;  4XNA A;  4XMV A;  3ZHY A;  4XO3 A;  4CXF A;  4KP7 A;  4RVB A;  4K5M A;  5HNH A;  4QME A;  3FUN A;  3U9W A;  5JO0 A;  3FU0 A;  1H19 A;  3ZHZ A;  3B7T A;  4R5T A;  4ZQF A;  3FTV A;  4L2L A;  1MW3 A;  1ONN A;  5JC1 A;  3FTZ A;  1T1R A;  3EBI A;  4FLO A;  3UER A;  4XO4 A;  4XN8 A;  2DQ6 A;  4XMU A;  4K5N A;  3VVL A;  2PUS A;  2JD0 A;  3JSZ A;  1Q0L A;  2QVW A;  3AU8 A;  4FCA A;  5FWQ A;  2EGH A;  4JND A;  5JNL A;  5AEN A;  4AIC A;  5JBI A;  1R0L A;  3CHQ A;  3A14 A;  4A03 A;  3Q44 A;  3ANL A;  4DPR A;  4NQW A;  3WQS B;  1JVS A;  5HLT A;  1SG7 A;  2MAO A;  2GTQ A;  2JCX A;  2JCY A;  4AYS A;  3AU9 A;  3B2X A;  4XO5 A;  2JCV A;  3FTS A;  2RJI A;  3ZI0 A;  3VVM A;  4LUP A;  3T0Y A;  2C82 A;  3FTW A;  4BKX A;  4XN4 A;  1G5A A;  4ZN6 A;  5JMP A;  2ZXG A;  4R5X A;  3B7R L;  3FU6 A;  4XN1 A;  3B7S A;  3B37 A;  3QJX A;  2JV7 A;  1ONO A;  2DQM A; 
#chains in the Genus database with same CATH homology
 5BPP A;  2VJ8 A;  4ZX5 A;  3FH5 A;  4OOE A;  3CZG A;  4GAE A;  4XMX A;  1H3L A;  1R0K A;  3FTU A;  4Y6R A;  4Y67 A;  4AR1 A;  2XPY A;  4QPE A;  4Y6P A;  3ANN A;  4J3B A;  4ZQE A;  3B7U X;  4XMW A;  1T1S A;  3FUF A;  4ZQH A;  3RAS A;  3EBG A;  1S46 A;  3FUE A;  2WPG A;  3FUD A;  3FUM A;  3FUK A;  4GAA A;  2Y1F A;  3FTX A;  4OOF A;  4ZW7 A;  3FU5 A;  4FLS A;  4R5V A;  4ZQG A;  1Q0H A;  4K5L A;  2R59 A;  5JAZ A;  3KED A;  4PW4 A;  2MAP A;  1SC5 A;  4RSY A;  2WZG A;  5DLL A;  2XQ0 A;  2O7G A;  3AUA A;  4XND A;  3CHS A;  3FUI A;  3RC8 A;  3FH8 A;  4QIR A;  4ZX4 A;  3Q43 A;  3EBH A;  5DYF A;  3CZK A;  2WZF A;  4Q4I A;  2FFL A;  4K5O A;  1SQM A;  5EV7 A;  3CZL A;  4XNB A;  4R7L A;  2VLA A;  4ZW6 A;  3FUJ A;  3FU3 A;  1K5H A;  3R0I A;  4PU2 A;  4XMT A;  1JGI A;  4ARF A;  4AR9 A;  1RP3 A;  4XN7 A;  3WQR A;  1GW6 A;  2R70 A;  3T8V A;  4ZW3 A;  4MS6 A;  5JMW A;  3B34 A;  1X3Z A;  3CHO A;  1OR7 A;  2R72 A;  2Y1E A;  2Y1D A;  1Q0Q A;  1MW1 A;  4Q4E A;  4XMZ A;  1JG9 A;  3ANM A;  4FLQ A;  2B61 A;  1HS6 A;  3FH7 A;  5HNF A;  1ONP A;  4AR8 A;  4XN2 A;  4XN9 A;  4ZX3 A;  3FUH A;  3A06 A;  4ZW5 A;  4QHP A;  1MW0 A;  2JD1 A;  1ZS2 A;  3B2P A;  3FTY A;  2HPT A;  2HPO A;  4ZX6 A;  3CIA A;  3JT1 A;  2C5Z A;  2PL5 A;  3ZHX A;  2PGG A;  4K5P A;  3CZE A;  5DUL A;  4FLR A;  1X3W A;  2A7O A;  1MW2 A;  2XPZ A;  3CHR A;  4ZQT A;  3RC3 A;  4MKT A;  4ZW8 A;  3UCQ A;  4QUO A;  3UEQ A;  2JD2 A;  3B3B A;  1MVY A;  4X2U A;  2Y1C A;  3FHE A;  2Y1G A;  3FUL A;  4RCV A;  4XN5 A;  3WQQ A;  2QJ1 A;  3IIE A;  3CHP A;  3PUU A;  4Y6S A;  4PVB A;  4XNA A;  4XMV A;  3ZHY A;  4XO3 A;  4CXF A;  4KP7 A;  4RVB A;  4K5M A;  5HNH A;  4QME A;  3FUN A;  3U9W A;  5JO0 A;  3FU0 A;  1H19 A;  3ZHZ A;  3B7T A;  4R5T A;  4ZQF A;  3FTV A;  4L2L A;  1MW3 A;  1ONN A;  5JC1 A;  3FTZ A;  1T1R A;  3EBI A;  4FLO A;  3UER A;  4XO4 A;  4XN8 A;  2DQ6 A;  4XMU A;  4K5N A;  3VVL A;  2PUS A;  2JD0 A;  3JSZ A;  1Q0L A;  2QVW A;  3AU8 A;  4FCA A;  5FWQ A;  2EGH A;  4JND A;  5JNL A;  5AEN A;  4AIC A;  5JBI A;  1R0L A;  3CHQ A;  3A14 A;  4A03 A;  3Q44 A;  3ANL A;  4DPR A;  4NQW A;  3WQS B;  1JVS A;  5HLT A;  1SG7 A;  2MAO A;  2GTQ A;  2JCX A;  2JCY A;  4AYS A;  3AU9 A;  3B2X A;  4XO5 A;  2JCV A;  3FTS A;  2RJI A;  3ZI0 A;  3VVM A;  4LUP A;  3T0Y A;  2C82 A;  3FTW A;  4BKX A;  4XN4 A;  1G5A A;  4ZN6 A;  5JMP A;  2ZXG A;  4R5X A;  3B7R L;  3FU6 A;  4XN1 A;  3B7S A;  3B37 A;  3QJX A;  2JV7 A;  1ONO A;  2DQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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